Protein ID | Hirsu2|3803 |
Gene name | |
Location | Contig_2010:2404..3899 |
Strand | + |
Gene length (bp) | 1495 |
Transcript length (bp) | 1431 |
Coding sequence length (bp) | 1431 |
Protein length (aa) | 477 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09362 | DUF1996 | Domain of unknown function (DUF1996) | 8.6E-58 | 41 | 303 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1031 | 0.1117 | 0.9777 | 0.2058 | 0.0742 | 0.0121 | 0.1447 | 0.1158 | 0.0944 | 0.0017 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.998896 |
Orthofinder run ID | 4 |
Orthogroup | 2558 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3803 MKLAVAAALAASIGAAAAGKDQRSFAVLRFNNKQLTKGRMDPIRTPGRTGNHVHNILGGSGFGLGSTGKDLAGSN CSTAKVKGDNSNYWFPSLYFKDPKTGRFEDVELFYANAYYFFEPTNDPIRPFPLGLSVVSGDVDTRAAPAGGSVT NLDPSKGPVNPVKWTCPRLDAGYSPPSWPAGSDGRLAGIGDPVNKGEGVGFPDVDCDGFGSPLRADVHFPSCYDP AVGLADYKNNMAFPRDSGNGRLDCPKGHLHLPHLFLEVYWNTLAFKGRWEPNKGHQPFVLSNGDATGFSLHADFM AGWDEKLLQHIIDTCDAGTAGMDKCPGLFYGLNEGDCTIDSAVNEKVDGPLDSLPGDNRLSGWAYGPGGGGPGPQ PSGEEPASASPSASASGSSPSPSRRPQPTSEYGSVSQTDAASQTDAASQTDAASQTDAASQTDAASQTDAASQTE TDNMSQSEAVEPEATGKPARGGYRGF* |
Coding | >Hirsu2|3803 ATGAAGCTCGCCGTTGCCGCGGCCCTCGCGGCCTCCATCGGCGCCGCCGCCGCCGGCAAGGACCAGCGGTCCTTC GCCGTCCTGCGCTTCAACAACAAGCAGCTGACCAAGGGCCGGATGGACCCGATCCGGACGCCGGGCCGGACCGGC AACCACGTGCACAACATCCTCGGCGGCAGCGGCTTCGGGCTCGGCTCGACCGGCAAGGACCTGGCCGGGTCCAAC TGCAGCACGGCCAAGGTCAAGGGCGACAACAGCAACTACTGGTTCCCGTCGCTCTACTTCAAGGACCCCAAGACG GGCCGGTTCGAGGACGTCGAGCTCTTCTACGCCAACGCCTACTACTTCTTCGAGCCGACCAACGACCCGATCCGG CCGTTCCCGCTCGGGCTCAGCGTCGTCAGCGGCGACGTCGACACCCGCGCCGCGCCCGCCGGCGGCTCCGTCACC AACCTGGACCCGTCCAAGGGGCCCGTCAACCCGGTCAAGTGGACGTGCCCGCGCCTCGACGCCGGCTACAGCCCG CCCTCGTGGCCCGCCGGCTCCGACGGCCGCCTAGCCGGCATCGGCGACCCCGTCAACAAGGGCGAGGGCGTCGGC TTCCCGGACGTCGACTGCGACGGCTTCGGCTCCCCGCTGCGCGCCGACGTCCACTTCCCCTCGTGCTACGACCCG GCCGTCGGCCTGGCCGACTACAAGAACAACATGGCCTTCCCGCGCGACAGCGGCAACGGCCGGCTCGACTGCCCC AAGGGCCACCTGCACCTCCCCCACCTCTTCCTTGAGGTCTACTGGAACACGCTGGCCTTCAAGGGCCGCTGGGAG CCCAACAAGGGCCACCAGCCCTTTGTCCTGTCCAACGGCGACGCCACCGGCTTCAGCCTGCACGCCGACTTCATG GCCGGCTGGGACGAGAAGCTGTTGCAGCACATCATCGACACCTGCGACGCCGGCACCGCCGGCATGGACAAGTGC CCCGGCCTCTTCTACGGCCTCAACGAGGGCGACTGCACCATCGACTCCGCTGTCAACGAGAAGGTCGACGGCCCC CTCGACTCCCTGCCCGGCGACAACCGCCTCTCCGGCTGGGCCTACGGCCCCGGCGGCGGCGGCCCCGGTCCCCAG CCCTCGGGCGAGGAGCCGGCCTCGGCTTCTCCTTCGGCTTCCGCTTCTGGCTCTTCTCCCTCACCCTCTCGGCGG CCCCAGCCCACCTCCGAGTACGGTTCCGTCTCCCAGACCGATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACC GATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACCGATGCCGCCTCTCAGACCGACGCTGCCTCCCAGACCGAG ACCGACAACATGTCGCAGTCCGAGGCCGTCGAGCCCGAAGCCACCGGCAAGCCGGCCAGGGGAGGGTACCGGGGC TTCTGA |
Transcript | >Hirsu2|3803 ATGAAGCTCGCCGTTGCCGCGGCCCTCGCGGCCTCCATCGGCGCCGCCGCCGCCGGCAAGGACCAGCGGTCCTTC GCCGTCCTGCGCTTCAACAACAAGCAGCTGACCAAGGGCCGGATGGACCCGATCCGGACGCCGGGCCGGACCGGC AACCACGTGCACAACATCCTCGGCGGCAGCGGCTTCGGGCTCGGCTCGACCGGCAAGGACCTGGCCGGGTCCAAC TGCAGCACGGCCAAGGTCAAGGGCGACAACAGCAACTACTGGTTCCCGTCGCTCTACTTCAAGGACCCCAAGACG GGCCGGTTCGAGGACGTCGAGCTCTTCTACGCCAACGCCTACTACTTCTTCGAGCCGACCAACGACCCGATCCGG CCGTTCCCGCTCGGGCTCAGCGTCGTCAGCGGCGACGTCGACACCCGCGCCGCGCCCGCCGGCGGCTCCGTCACC AACCTGGACCCGTCCAAGGGGCCCGTCAACCCGGTCAAGTGGACGTGCCCGCGCCTCGACGCCGGCTACAGCCCG CCCTCGTGGCCCGCCGGCTCCGACGGCCGCCTAGCCGGCATCGGCGACCCCGTCAACAAGGGCGAGGGCGTCGGC TTCCCGGACGTCGACTGCGACGGCTTCGGCTCCCCGCTGCGCGCCGACGTCCACTTCCCCTCGTGCTACGACCCG GCCGTCGGCCTGGCCGACTACAAGAACAACATGGCCTTCCCGCGCGACAGCGGCAACGGCCGGCTCGACTGCCCC AAGGGCCACCTGCACCTCCCCCACCTCTTCCTTGAGGTCTACTGGAACACGCTGGCCTTCAAGGGCCGCTGGGAG CCCAACAAGGGCCACCAGCCCTTTGTCCTGTCCAACGGCGACGCCACCGGCTTCAGCCTGCACGCCGACTTCATG GCCGGCTGGGACGAGAAGCTGTTGCAGCACATCATCGACACCTGCGACGCCGGCACCGCCGGCATGGACAAGTGC CCCGGCCTCTTCTACGGCCTCAACGAGGGCGACTGCACCATCGACTCCGCTGTCAACGAGAAGGTCGACGGCCCC CTCGACTCCCTGCCCGGCGACAACCGCCTCTCCGGCTGGGCCTACGGCCCCGGCGGCGGCGGCCCCGGTCCCCAG CCCTCGGGCGAGGAGCCGGCCTCGGCTTCTCCTTCGGCTTCCGCTTCTGGCTCTTCTCCCTCACCCTCTCGGCGG CCCCAGCCCACCTCCGAGTACGGTTCCGTCTCCCAGACCGATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACC GATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACCGATGCCGCCTCTCAGACCGACGCTGCCTCCCAGACCGAG ACCGACAACATGTCGCAGTCCGAGGCCGTCGAGCCCGAAGCCACCGGCAAGCCGGCCAGGGGAGGGTACCGGGGC TTCTGA |
Gene | >Hirsu2|3803 ATGAAGCTCGCCGTTGCCGCGGCCCTCGCGGCCTCCATCGGCGCCGCCGCCGCCGGCAAGGACCAGCGGTCCTTC GCCGTCCTGCGCTTCAACAACAAGCAGCTGACCAAGGGCCGGATGGACCCGATCCGGACGCCGGGCCGGACCGGC AACCACGTGCACAACATCCTCGGCGGCAGCGGCTTCGGGCTCGGCTCGACCGGCAAGGACCTGGCCGGGTCCAAC TGCAGCACGGCCAAGGTCAAGGGCGACAACAGCAACTACTGGTTCCCGTCGCTCTACTTCAAGGACCCCAAGACG GGCCGGTTCGAGGACGTCGAGCTCTTCTACGCCAACGCCTACTACTTCTTCGAGCCGACCAACGACCCGATCCGG CCGTTCCCGCTCGGGCTCAGCGTCGTCAGCGGCGACGTCGACACCCGCGCCGCGCCCGCCGGCGGCTCCGTCACC AACCTGGACCCGTCCAAGGGGCCCGTCAACCCGGTCAAGTGGACGTGCCCGCGCCTCGACGCCGGCTACAGCCCG CCCTCGTGGCCCGCCGGCTCCGACGGCCGCCTAGCCGGCATCGGCGACCCCGTCAACAAGGGCGAGGGCGTCGGC TTCCCGGACGTCGACTGCGACGGCTTCGGCTCCCCGCTGCGCGCCGACGTCCACTTCCCCTCGTGCTACGACCCG GCCGTCGGCCTGGCCGACTACAAGAACAACATGGCCTTCCCGCGCGACAGCGGCAACGGCCGGCTCGACTGCCCC AAGGGCCACCTGCACCTCCCCCACCTCTTCCTTGAGGTCTACTGGAACACGCTGGCCTTCAAGGGCCGCTGGGAG CCCAACAAGGGCCACCAGCCCTTTGTCCTGTCCAACGGCGACGCCACCGGCTTCAGCCTGCACGCCGACTTCATG GCCGGCTGGGACGAGAAGCTGTTGCAGCACATCATCGACACCTGCGACGCCGGCACCGCCGGCATGGACAAGTGC CCCGGCCTCTTCTACGGCCTCAACGAGGGCGACTGCACCATCGACTCCGCTGTCAACGAGAAGGTCGACGGCCCC CTCGACTCCCTGCCCGGCGACAACCGCCTCTCCGGCTGGGCCTACGGCCCCGGCGGCGGCGGCCCCGGTCCCCAG CCCTCGGGCGAGGAGCCGGCCTCGGCTTCTCCTTCGGCTTCCGCTTCTGGCTCTTCTCCCTCACCCTCTCGGCGG CCCCAGCCCACCTCCGAGTACGGTTCCGTCTCCCAGACCGATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACC GATGCCGCCTCTCAGACCGATGCTGCCTCTCAGACCGATGCCGCCTCTCAGACCGACGCTGCCTCCCAGACCGAG ACCGACAACATGTCGCAGTCCGAGGCCGTCGAGCCCGAAGCCACCGGCAAGCCGGCCAGGGGAGGGTACCGGTAT CCCCTGCCCAAGGCGGAGATCGTGTCCGGGACAGAGAGCCGGGTCGGATCGCCAACCAAGGGGCTTCTGA |