© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3791 |
| Gene name | |
| Location | Contig_2009:3676..3994 |
| Strand | - |
| Gene length (bp) | 318 |
| Transcript length (bp) | 318 |
| Coding sequence length (bp) | 318 |
| Protein length (aa) | 106 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13602 | ADH_zinc_N_2 | Zinc-binding dehydrogenase | 2.1E-17 | 2 | 101 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0DN30|RTAI1_ARTBC | Probable zinc-binding oxidoreductase, mitochondrial OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02327-2 PE=3 SV=1 | 1 | 103 | 1.0E-22 |
| sp|Q7T3C7|RT4I1_DANRE | Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2 | 41 | 105 | 5.0E-08 |
| sp|A7TH23|YIM1_VANPO | Protein YIM1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=YIM1 PE=3 SV=1 | 49 | 103 | 1.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.7527 | 0.5504 | 0.1249 | 0.0608 | 0.3482 | 0.3402 | 0.082 | 0.0582 | 0.0516 | 0.0066 |
| Orthofinder run ID | 4 |
| Orthogroup | 7575 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3791 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3791 MVLDCAGGEALAGCWSAVKDGGVLLSVADSPDRVKPDWVTKKLVKSTWFLVEPRGSDLAHISDIVDRGLARPWVD SVVDFDEFQTAFEKVQQGRTKGKVVIRVAD* |
| Coding | >Hirsu2|3791 ATGGTGCTCGACTGCGCCGGCGGCGAGGCGCTGGCCGGCTGCTGGTCGGCCGTCAAGGACGGCGGCGTCCTGCTC AGCGTCGCCGATTCGCCGGACCGGGTCAAGCCCGACTGGGTGACGAAGAAGCTGGTCAAGAGCACCTGGTTCCTC GTCGAGCCGCGCGGCTCCGACCTCGCCCACATCTCCGACATCGTCGACAGGGGCCTAGCCAGGCCCTGGGTCGAC AGCGTTGTCGACTTTGACGAGTTCCAGACCGCCTTCGAAAAGGTTCAGCAGGGGCGCACCAAGGGCAAGGTCGTC ATCAGGGTCGCCGACTGA |
| Transcript | >Hirsu2|3791 ATGGTGCTCGACTGCGCCGGCGGCGAGGCGCTGGCCGGCTGCTGGTCGGCCGTCAAGGACGGCGGCGTCCTGCTC AGCGTCGCCGATTCGCCGGACCGGGTCAAGCCCGACTGGGTGACGAAGAAGCTGGTCAAGAGCACCTGGTTCCTC GTCGAGCCGCGCGGCTCCGACCTCGCCCACATCTCCGACATCGTCGACAGGGGCCTAGCCAGGCCCTGGGTCGAC AGCGTTGTCGACTTTGACGAGTTCCAGACCGCCTTCGAAAAGGTTCAGCAGGGGCGCACCAAGGGCAAGGTCGTC ATCAGGGTCGCCGACTGA |
| Gene | >Hirsu2|3791 ATGGTGCTCGACTGCGCCGGCGGCGAGGCGCTGGCCGGCTGCTGGTCGGCCGTCAAGGACGGCGGCGTCCTGCTC AGCGTCGCCGATTCGCCGGACCGGGTCAAGCCCGACTGGGTGACGAAGAAGCTGGTCAAGAGCACCTGGTTCCTC GTCGAGCCGCGCGGCTCCGACCTCGCCCACATCTCCGACATCGTCGACAGGGGCCTAGCCAGGCCCTGGGTCGAC AGCGTTGTCGACTTTGACGAGTTCCAGACCGCCTTCGAAAAGGTTCAGCAGGGGCGCACCAAGGGCAAGGTCGTC ATCAGGGTCGCCGACTGA |