Protein ID | Hirsu2|3788 |
Gene name | |
Location | Contig_2008:3326..3695 |
Strand | + |
Gene length (bp) | 369 |
Transcript length (bp) | 369 |
Coding sequence length (bp) | 369 |
Protein length (aa) | 123 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11327 | Egh16-like | Egh16-like virulence factor | 1.2E-10 | 26 | 108 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6041 | 0.3165 | 0.4491 | 0.1784 | 0.1743 | 0.0187 | 0.1139 | 0.1775 | 0.2009 | 0.0207 |
Orthofinder run ID | 4 |
Orthogroup | 421 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3788 MDQFREFADELQITVRDSDIGLLSITQSQFDSPKMNIDEIERKVVNKCGRSEMGMIDMGAGMLTAAQTGLLTQLK AGSNCTATIRQINQDGGPEYRCELDQDGQGKFDVVSAASTQRARAQN* |
Coding | >Hirsu2|3788 ATGGACCAGTTCCGAGAATTCGCGGACGAGCTCCAGATCACGGTGCGCGATTCAGACATCGGGCTGTTGTCCATA ACCCAGAGCCAGTTCGACAGTCCCAAGATGAACATTGACGAGATCGAGCGCAAGGTCGTCAATAAATGCGGACGC TCCGAAATGGGCATGATCGACATGGGCGCCGGCATGCTCACCGCCGCACAGACCGGCCTTCTCACCCAGCTCAAG GCCGGCAGCAATTGCACCGCGACGATCCGCCAGATCAACCAAGACGGTGGCCCGGAGTACAGGTGCGAGTTGGAC CAAGACGGCCAGGGCAAATTCGACGTGGTGAGTGCAGCGTCTACACAGAGGGCACGAGCGCAGAACTAA |
Transcript | >Hirsu2|3788 ATGGACCAGTTCCGAGAATTCGCGGACGAGCTCCAGATCACGGTGCGCGATTCAGACATCGGGCTGTTGTCCATA ACCCAGAGCCAGTTCGACAGTCCCAAGATGAACATTGACGAGATCGAGCGCAAGGTCGTCAATAAATGCGGACGC TCCGAAATGGGCATGATCGACATGGGCGCCGGCATGCTCACCGCCGCACAGACCGGCCTTCTCACCCAGCTCAAG GCCGGCAGCAATTGCACCGCGACGATCCGCCAGATCAACCAAGACGGTGGCCCGGAGTACAGGTGCGAGTTGGAC CAAGACGGCCAGGGCAAATTCGACGTGGTGAGTGCAGCGTCTACACAGAGGGCACGAGCGCAGAACTAA |
Gene | >Hirsu2|3788 ATGGACCAGTTCCGAGAATTCGCGGACGAGCTCCAGATCACGGTGCGCGATTCAGACATCGGGCTGTTGTCCATA ACCCAGAGCCAGTTCGACAGTCCCAAGATGAACATTGACGAGATCGAGCGCAAGGTCGTCAATAAATGCGGACGC TCCGAAATGGGCATGATCGACATGGGCGCCGGCATGCTCACCGCCGCACAGACCGGCCTTCTCACCCAGCTCAAG GCCGGCAGCAATTGCACCGCGACGATCCGCCAGATCAACCAAGACGGTGGCCCGGAGTACAGGTGCGAGTTGGAC CAAGACGGCCAGGGCAAATTCGACGTGGTGAGTGCAGCGTCTACACAGAGGGCACGAGCGCAGAACTAA |