© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3747 |
| Gene name | |
| Location | Contig_20:32221..32623 |
| Strand | - |
| Gene length (bp) | 402 |
| Transcript length (bp) | 402 |
| Coding sequence length (bp) | 402 |
| Protein length (aa) | 134 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00857 | Isochorismatase | Isochorismatase family | 1.1E-15 | 5 | 125 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O07081|YRDC_BACSU | Uncharacterized isochorismatase family protein YrdC OS=Bacillus subtilis (strain 168) GN=yrdC PE=3 SV=1 | 2 | 130 | 6.0E-19 |
| sp|D4GWH7|Y2328_HALVD | Uncharacterized isochorismatase family protein HVO_2328 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=HVO_2328 PE=1 SV=1 | 4 | 120 | 6.0E-15 |
| sp|P96654|YDDQ_BACSU | Uncharacterized isochorismatase family protein YddQ OS=Bacillus subtilis (strain 168) GN=yddQ PE=3 SV=1 | 2 | 128 | 1.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | 0.451 | 0.5288 | 0.123 | 0.1525 | 0.1792 | 0.0115 | 0.0353 | 0.4473 | 0.2325 | 0.164 |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 17 | (None) |
| Orthofinder run ID | 4 |
| Orthogroup | 9425 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3747 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3747 MEYAAPLPSERIFVKTTNSPFIETDLEKVIKDLHAQRLVVAGLMTAHCVATTLRMAANLRVVDHSYGCPIKNQTH GSDAEIVLLEDATATFNVGHRGKNYDAETVHAVHLATMKDEFCDVGTTDEVIRSLHEV* |
| Coding | >Hirsu2|3747 ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG GTGATTCGATCCTTGCATGAAGTGTAA |
| Transcript | >Hirsu2|3747 ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG GTGATTCGATCCTTGCATGAAGTGTAA |
| Gene | >Hirsu2|3747 ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG GTGATTCGATCCTTGCATGAAGTGTAA |