Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3747
Gene name
LocationContig_20:32221..32623
Strand-
Gene length (bp)402
Transcript length (bp)402
Coding sequence length (bp)402
Protein length (aa) 134

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00857 Isochorismatase Isochorismatase family 1.1E-15 5 125

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O07081|YRDC_BACSU Uncharacterized isochorismatase family protein YrdC OS=Bacillus subtilis (strain 168) GN=yrdC PE=3 SV=1 2 130 6.0E-19
sp|D4GWH7|Y2328_HALVD Uncharacterized isochorismatase family protein HVO_2328 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=HVO_2328 PE=1 SV=1 4 120 6.0E-15
sp|P96654|YDDQ_BACSU Uncharacterized isochorismatase family protein YddQ OS=Bacillus subtilis (strain 168) GN=yddQ PE=3 SV=1 2 128 1.0E-07

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus 0.451 0.5288 0.123 0.1525 0.1792 0.0115 0.0353 0.4473 0.2325 0.164

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

Gene cluster ID Type of secondary metabolism gene
Cluster 17 (None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9425
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|3747 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3747
MEYAAPLPSERIFVKTTNSPFIETDLEKVIKDLHAQRLVVAGLMTAHCVATTLRMAANLRVVDHSYGCPIKNQTH
GSDAEIVLLEDATATFNVGHRGKNYDAETVHAVHLATMKDEFCDVGTTDEVIRSLHEV*
Coding >Hirsu2|3747
ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC
CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG
ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT
GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC
GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG
GTGATTCGATCCTTGCATGAAGTGTAA
Transcript >Hirsu2|3747
ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC
CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG
ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT
GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC
GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG
GTGATTCGATCCTTGCATGAAGTGTAA
Gene >Hirsu2|3747
ATGGAGTATGCGGCCCCGTTACCGTCCGAGCGCATCTTCGTCAAGACGACAAACTCGCCCTTCATAGAGACAGAC
CTGGAGAAGGTGATCAAGGACCTCCATGCCCAACGCCTCGTTGTAGCGGGCCTGATGACGGCACACTGCGTGGCG
ACAACGCTGCGGATGGCAGCGAATCTACGTGTTGTCGACCACTCCTACGGCTGCCCCATCAAGAACCAAACTCAT
GGCTCAGACGCCGAGATCGTCCTGCTGGAAGATGCCACTGCCACCTTTAATGTCGGCCATCGGGGCAAGAACTAC
GATGCGGAGACTGTGCACGCTGTCCATTTAGCAACCATGAAGGATGAGTTTTGTGATGTGGGGACAACGGATGAG
GTGATTCGATCCTTGCATGAAGTGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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