© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3742 |
| Gene name | |
| Location | Contig_20:10549..11947 |
| Strand | - |
| Gene length (bp) | 1398 |
| Transcript length (bp) | 1398 |
| Coding sequence length (bp) | 1398 |
| Protein length (aa) | 466 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Transmembrane domain | 0.3492 | 0.2178 | 0.0963 | 0.2985 | 0.295 | 0.192 | 0.4113 | 0.392 | 0.5608 | 0.015 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 114 | 22 |
| 2 | 169 | 191 | 22 |
| 3 | 206 | 228 | 22 |
| 4 | 261 | 280 | 19 |
| 5 | 284 | 303 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 813 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3742 MLSSELVPSAGPGEVRNASSNDIRDTTAGTDANADKDSDGIAVKLVRGKNGRLDYVPRTRLLNDLSWAVGLMELA NAGDFAANVWNEVPVPVYAVVFMAIGGTVAAAMCVVAFHDARLACRNVRFLRRQRRDQKAERAARQERGQSTLDL DVYLSVTFRELGSEIVTRWLTNLLMGCGALIISIGTFMAIGGANPTVWFASNVLSGYLGNAPIALYGVVTLLWAS YVFCKAQGHIWATRRSLRGTKAAALVRRRARTVQAFCVVNGTAAVLGGVASLLTATQWWAYVMLIPVIAASVFCN VWWRRRVGYSRAKSPAGANEFPALSLANLVVEVESAARAGAAIRGRKASPIDEFVADPTSLAQVLRFLQRNMLLE VFCLKACSVPHLCRALGADQDTEVTIGVDQLLAVSKECQATLLEMARECAEELGSENLEYRQRYTAELLGTYCRL VGGVGGGSGIDVDEK* |
| Coding | >Hirsu2|3742 ATGCTCAGCAGCGAGCTCGTTCCATCAGCCGGCCCTGGCGAGGTGCGCAATGCTTCGAGCAACGACATTCGAGAC ACGACCGCCGGAACGGACGCGAACGCGGATAAAGACAGCGACGGCATCGCTGTAAAGCTCGTCAGGGGGAAGAAC GGCCGGCTCGATTATGTACCCAGAACGCGGCTCCTCAACGACCTCTCGTGGGCAGTGGGCCTGATGGAGCTCGCC AACGCGGGTGACTTCGCGGCAAACGTATGGAACGAGGTGCCCGTGCCCGTCTACGCCGTCGTCTTCATGGCCATA GGCGGGACGGTGGCGGCGGCTATGTGTGTCGTTGCCTTCCACGATGCGAGGCTCGCGTGCCGCAACGTGCGTTTC CTTCGACGCCAGCGCCGAGACCAAAAAGCAGAGCGGGCCGCGAGACAGGAGCGTGGCCAGTCGACGCTGGACTTG GACGTCTACCTCTCCGTCACGTTCCGCGAGCTCGGGAGCGAAATCGTCACTCGCTGGCTCACCAACCTCCTCATG GGCTGCGGTGCGCTCATCATCTCCATCGGCACGTTCATGGCCATAGGCGGTGCCAACCCAACCGTGTGGTTTGCC AGTAACGTCCTGTCCGGATACCTTGGCAATGCCCCGATCGCCCTATACGGCGTGGTAACCTTGCTCTGGGCCTCC TACGTCTTCTGCAAGGCCCAGGGCCATATCTGGGCGACACGCCGGTCTCTTAGGGGCACCAAGGCCGCGGCTCTC GTCAGGCGGCGCGCCCGCACTGTTCAGGCCTTCTGCGTCGTCAACGGCACGGCGGCGGTGCTGGGCGGCGTTGCG TCGTTGCTGACGGCCACGCAGTGGTGGGCATACGTCATGCTCATCCCCGTCATCGCCGCCTCGGTCTTCTGCAAC GTGTGGTGGCGCCGGCGCGTCGGATACTCCCGTGCAAAGTCGCCCGCCGGGGCGAACGAGTTCCCAGCCCTCAGC CTGGCCAATCTCGTCGTGGAAGTCGAGTCCGCCGCTCGAGCCGGAGCTGCCATTCGGGGACGAAAGGCTTCTCCG ATCGACGAGTTCGTTGCGGACCCGACCTCTCTCGCCCAGGTTCTCCGTTTTCTCCAACGAAATATGCTTCTTGAA GTCTTCTGTCTCAAGGCCTGCTCGGTACCGCACCTGTGCCGCGCCCTGGGCGCCGATCAGGACACCGAGGTAACC ATTGGCGTGGATCAGTTGCTGGCCGTGTCAAAAGAATGCCAAGCCACATTGCTCGAAATGGCTCGGGAGTGTGCC GAAGAGCTTGGCTCCGAGAATTTAGAGTATCGACAGCGATATACTGCGGAACTTTTGGGTACATATTGCAGACTT GTTGGTGGTGTAGGCGGTGGTAGTGGCATCGACGTCGACGAAAAATAG |
| Transcript | >Hirsu2|3742 ATGCTCAGCAGCGAGCTCGTTCCATCAGCCGGCCCTGGCGAGGTGCGCAATGCTTCGAGCAACGACATTCGAGAC ACGACCGCCGGAACGGACGCGAACGCGGATAAAGACAGCGACGGCATCGCTGTAAAGCTCGTCAGGGGGAAGAAC GGCCGGCTCGATTATGTACCCAGAACGCGGCTCCTCAACGACCTCTCGTGGGCAGTGGGCCTGATGGAGCTCGCC AACGCGGGTGACTTCGCGGCAAACGTATGGAACGAGGTGCCCGTGCCCGTCTACGCCGTCGTCTTCATGGCCATA GGCGGGACGGTGGCGGCGGCTATGTGTGTCGTTGCCTTCCACGATGCGAGGCTCGCGTGCCGCAACGTGCGTTTC CTTCGACGCCAGCGCCGAGACCAAAAAGCAGAGCGGGCCGCGAGACAGGAGCGTGGCCAGTCGACGCTGGACTTG GACGTCTACCTCTCCGTCACGTTCCGCGAGCTCGGGAGCGAAATCGTCACTCGCTGGCTCACCAACCTCCTCATG GGCTGCGGTGCGCTCATCATCTCCATCGGCACGTTCATGGCCATAGGCGGTGCCAACCCAACCGTGTGGTTTGCC AGTAACGTCCTGTCCGGATACCTTGGCAATGCCCCGATCGCCCTATACGGCGTGGTAACCTTGCTCTGGGCCTCC TACGTCTTCTGCAAGGCCCAGGGCCATATCTGGGCGACACGCCGGTCTCTTAGGGGCACCAAGGCCGCGGCTCTC GTCAGGCGGCGCGCCCGCACTGTTCAGGCCTTCTGCGTCGTCAACGGCACGGCGGCGGTGCTGGGCGGCGTTGCG TCGTTGCTGACGGCCACGCAGTGGTGGGCATACGTCATGCTCATCCCCGTCATCGCCGCCTCGGTCTTCTGCAAC GTGTGGTGGCGCCGGCGCGTCGGATACTCCCGTGCAAAGTCGCCCGCCGGGGCGAACGAGTTCCCAGCCCTCAGC CTGGCCAATCTCGTCGTGGAAGTCGAGTCCGCCGCTCGAGCCGGAGCTGCCATTCGGGGACGAAAGGCTTCTCCG ATCGACGAGTTCGTTGCGGACCCGACCTCTCTCGCCCAGGTTCTCCGTTTTCTCCAACGAAATATGCTTCTTGAA GTCTTCTGTCTCAAGGCCTGCTCGGTACCGCACCTGTGCCGCGCCCTGGGCGCCGATCAGGACACCGAGGTAACC ATTGGCGTGGATCAGTTGCTGGCCGTGTCAAAAGAATGCCAAGCCACATTGCTCGAAATGGCTCGGGAGTGTGCC GAAGAGCTTGGCTCCGAGAATTTAGAGTATCGACAGCGATATACTGCGGAACTTTTGGGTACATATTGCAGACTT GTTGGTGGTGTAGGCGGTGGTAGTGGCATCGACGTCGACGAAAAATAG |
| Gene | >Hirsu2|3742 ATGCTCAGCAGCGAGCTCGTTCCATCAGCCGGCCCTGGCGAGGTGCGCAATGCTTCGAGCAACGACATTCGAGAC ACGACCGCCGGAACGGACGCGAACGCGGATAAAGACAGCGACGGCATCGCTGTAAAGCTCGTCAGGGGGAAGAAC GGCCGGCTCGATTATGTACCCAGAACGCGGCTCCTCAACGACCTCTCGTGGGCAGTGGGCCTGATGGAGCTCGCC AACGCGGGTGACTTCGCGGCAAACGTATGGAACGAGGTGCCCGTGCCCGTCTACGCCGTCGTCTTCATGGCCATA GGCGGGACGGTGGCGGCGGCTATGTGTGTCGTTGCCTTCCACGATGCGAGGCTCGCGTGCCGCAACGTGCGTTTC CTTCGACGCCAGCGCCGAGACCAAAAAGCAGAGCGGGCCGCGAGACAGGAGCGTGGCCAGTCGACGCTGGACTTG GACGTCTACCTCTCCGTCACGTTCCGCGAGCTCGGGAGCGAAATCGTCACTCGCTGGCTCACCAACCTCCTCATG GGCTGCGGTGCGCTCATCATCTCCATCGGCACGTTCATGGCCATAGGCGGTGCCAACCCAACCGTGTGGTTTGCC AGTAACGTCCTGTCCGGATACCTTGGCAATGCCCCGATCGCCCTATACGGCGTGGTAACCTTGCTCTGGGCCTCC TACGTCTTCTGCAAGGCCCAGGGCCATATCTGGGCGACACGCCGGTCTCTTAGGGGCACCAAGGCCGCGGCTCTC GTCAGGCGGCGCGCCCGCACTGTTCAGGCCTTCTGCGTCGTCAACGGCACGGCGGCGGTGCTGGGCGGCGTTGCG TCGTTGCTGACGGCCACGCAGTGGTGGGCATACGTCATGCTCATCCCCGTCATCGCCGCCTCGGTCTTCTGCAAC GTGTGGTGGCGCCGGCGCGTCGGATACTCCCGTGCAAAGTCGCCCGCCGGGGCGAACGAGTTCCCAGCCCTCAGC CTGGCCAATCTCGTCGTGGAAGTCGAGTCCGCCGCTCGAGCCGGAGCTGCCATTCGGGGACGAAAGGCTTCTCCG ATCGACGAGTTCGTTGCGGACCCGACCTCTCTCGCCCAGGTTCTCCGTTTTCTCCAACGAAATATGCTTCTTGAA GTCTTCTGTCTCAAGGCCTGCTCGGTACCGCACCTGTGCCGCGCCCTGGGCGCCGATCAGGACACCGAGGTAACC ATTGGCGTGGATCAGTTGCTGGCCGTGTCAAAAGAATGCCAAGCCACATTGCTCGAAATGGCTCGGGAGTGTGCC GAAGAGCTTGGCTCCGAGAATTTAGAGTATCGACAGCGATATACTGCGGAACTTTTGGGTACATATTGCAGACTT GTTGGTGGTGTAGGCGGTGGTAGTGGCATCGACGTCGACGAAAAATAG |