© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3725 |
| Gene name | |
| Location | Contig_2:60747..61671 |
| Strand | - |
| Gene length (bp) | 924 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06912 | DUF1275 | Protein of unknown function (DUF1275) | 4.5E-47 | 46 | 254 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 56 | 19 |
| 2 | 66 | 88 | 22 |
| 3 | 123 | 145 | 22 |
| 4 | 155 | 177 | 22 |
| 5 | 215 | 232 | 17 |
| 6 | 237 | 259 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3725 MSNSNGYTERAPLLGPKPASSSKALLARWRRRMTAEVSRSWADLVLLLCYVVTGLLDSASTQVWGAFVSMQTGNT VYVGLGLASLVFPPTTPRLYRSGVSLLSFCVGSFLFARFHRFFSPKRRWVLCASFAAQAALTVAAAVIVANAPPA SQDAVDWTVLLPLALVAFQSCAQAVTSRALRHNALTSVVLTSIYCDLFSDHDLFALRNVERNRRATAPLLLLVGA VGGGLLSHSSFGISGALWTAAGLKFCMVVAWFFWPAEPEEDDQAGERAGR* |
| Coding | >Hirsu2|3725 ATGAGCAACTCCAACGGCTACACCGAACGCGCGCCTCTGCTCGGCCCCAAGCCCGCGTCGTCGTCCAAGGCGCTG CTGGCCCGATGGCGCCGCCGGATGACGGCTGAGGTGTCGCGCTCCTGGGCCGATCTTGTCTTGCTGCTCTGCTAC GTCGTCACTGGCCTGCTGGACAGCGCGTCGACGCAGGTCTGGGGCGCCTTCGTCTCCATGCAAACAGGAAACACC GTCTATGTCGGCCTCGGCCTCGCCTCTCTCGTCTTCCCGCCCACGACGCCCCGCCTGTACCGCTCCGGCGTCTCG CTGCTCTCCTTCTGCGTCGGCTCCTTTCTCTTCGCCCGCTTCCACCGCTTCTTCTCCCCCAAGCGCCGCTGGGTC CTGTGTGCCTCCTTCGCCGCGCAGGCGGCCCTGACCGTCGCCGCCGCCGTCATCGTAGCCAACGCGCCGCCCGCC TCCCAGGACGCCGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCCTTCCAGAGCTGCGCCCAGGCGGTG ACGAGCAGGGCCCTCCGGCACAACGCGCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC CACGACCTCTTTGCCCTCCGCAACGTCGAGAGGAACCGCCGCGCCACCGCGCCGCTGCTACTGCTCGTCGGCGCC GTCGGCGGCGGGCTCCTGTCGCATAGCTCGTTCGGCATCAGCGGTGCGCTGTGGACCGCCGCCGGCCTCAAGTTC TGCATGGTCGTCGCCTGGTTCTTCTGGCCCGCAGAACCCGAGGAAGACGACCAGGCTGGCGAGAGGGCAGGGAGA TGA |
| Transcript | >Hirsu2|3725 ATGAGCAACTCCAACGGCTACACCGAACGCGCGCCTCTGCTCGGCCCCAAGCCCGCGTCGTCGTCCAAGGCGCTG CTGGCCCGATGGCGCCGCCGGATGACGGCTGAGGTGTCGCGCTCCTGGGCCGATCTTGTCTTGCTGCTCTGCTAC GTCGTCACTGGCCTGCTGGACAGCGCGTCGACGCAGGTCTGGGGCGCCTTCGTCTCCATGCAAACAGGAAACACC GTCTATGTCGGCCTCGGCCTCGCCTCTCTCGTCTTCCCGCCCACGACGCCCCGCCTGTACCGCTCCGGCGTCTCG CTGCTCTCCTTCTGCGTCGGCTCCTTTCTCTTCGCCCGCTTCCACCGCTTCTTCTCCCCCAAGCGCCGCTGGGTC CTGTGTGCCTCCTTCGCCGCGCAGGCGGCCCTGACCGTCGCCGCCGCCGTCATCGTAGCCAACGCGCCGCCCGCC TCCCAGGACGCCGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCCTTCCAGAGCTGCGCCCAGGCGGTG ACGAGCAGGGCCCTCCGGCACAACGCGCTGACCAGCGTCGTCCTCACCAGCATCTACTGCGACCTGTTCTCCGAC CACGACCTCTTTGCCCTCCGCAACGTCGAGAGGAACCGCCGCGCCACCGCGCCGCTGCTACTGCTCGTCGGCGCC GTCGGCGGCGGGCTCCTGTCGCATAGCTCGTTCGGCATCAGCGGTGCGCTGTGGACCGCCGCCGGCCTCAAGTTC TGCATGGTCGTCGCCTGGTTCTTCTGGCCCGCAGAACCCGAGGAAGACGACCAGGCTGGCGAGAGGGCAGGGAGA TGA |
| Gene | >Hirsu2|3725 ATGAGCAACTCCAACGGCTACACCGAACGCGCGCCTCTGCTCGGCCCCAAGCCCGCGTCGTCGTCCAAGGCGCTG CTGGCCCGATGGCGCCGCCGGATGACGGCTGAGGTGTCGCGCTCCTGGGCCGATCTTGTCTTGCTGCTCTGCTAC GTCGTCACTGGCCTGCTGGACAGCGCGTCGACGCAGGTCTGGGGCGCCTTCGTCTCCATGCAAACAGGTCCGATC ACCCCTCTCCGCGTGTTACACAGCCGAGATGACGTCCGGCCCCCTTGCAGGCCTCGGCTCGCTCTGACTGTTGCT GGACGAATCACAGGAAACACCGTCTATGTCGGCCTCGGCCTCGCCTCTCTCGTCTTCCCGCCCACGACGCCCCGC CTGTACCGCTCCGGCGTCTCGCTGCTCTCCTTCTGCGTCGGCTCCTTTCTCTTCGCCCGCTTCCACCGCTTCTTC TCCCCCAAGCGCCGCTGGGTCCTGTGTGCCTCCTTCGCCGCGCAGGCGGCCCTGACCGTCGCCGCCGCCGTCATC GTAGCCAACGCGCCGCCCGCCTCCCAGGACGCCGTCGACTGGACCGTCCTGCTGCCCCTCGCCCTCGTCGCCTTC CAGAGCTGCGCCCAGGCGGTGACGAGCAGGGCCCTCCGGCACAACGCGCTGACCAGCGTCGTCCTCACCAGCATC TACTGCGACCTGTTCTCCGACCACGACCTCTTTGCCCTCCGCAACGTCGAGAGGAACCGCCGCGCCACCGCGCCG CTGCTACTGCTCGTCGGCGCCGTCGGCGGCGGGCTCCTGTCGCATAGCTCGTTCGGCATCAGCGGTGCGCTGTGG ACCGCCGCCGGCCTCAAGTTCTGCATGGTCGTCGCCTGGTTCTTCTGGCCCGCAGAACCCGAGGAAGACGACCAG GCTGGCGAGAGGGCAGGGAGATGA |