© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|37 |
| Gene name | |
| Location | Contig_100:36600..38234 |
| Strand | + |
| Gene length (bp) | 1634 |
| Transcript length (bp) | 1509 |
| Coding sequence length (bp) | 1509 |
| Protein length (aa) | 503 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20179 | MSS51_C | MSS51 C-terminal domain | 4.5E-44 | 244 | 473 |
| PF13824 | zf-Mss51 | Zinc-finger of mitochondrial splicing suppressor 51 | 3.3E-29 | 115 | 190 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32335|MSS51_YEAST | Protein MSS51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSS51 PE=1 SV=2 | 92 | 500 | 9.0E-90 |
| sp|Q9UTB4|MSS51_SCHPO | Protein mss51 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mss51 PE=3 SV=1 | 88 | 497 | 3.0E-72 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.2158 | 0.1885 | 0.0337 | 0.1013 | 0.9257 | 0.03 | 0.0264 | 0.0426 | 0.0692 | 0.0113 |
| Orthofinder run ID | 4 |
| Orthogroup | 2526 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|37 MLRRTTRGLCGRCSASLRKQTAAGGFAKSWNKASPGATKSAVSAGAQHRAWAREPATRARAFTTSSKSNNEAASP ESLLKPASLRLKSDDLFHPFSSSPVPEFRRRAAFMRQHAFCPHPDHKPTRLPTVGPGPGSAAEAGGDRPPAHVSY ECPDCGFPVYCSKEHWMDHYDNHLQICDTLRQINEDDHDLRSGRVFHEGNLPDVQLDEAAVNMTNWDTFMYTREF EAINSDRSMRQITRLLTYPVTIGSVLHELSPYSVRKGERLTVEGLKSLSALRYNLHPPKAGQGVGINQLRPEPPP VRLFVLGARAESSLPRAAWVQLAHLFPEARLHLIFIGPESMANRDDEFPLPQRTPSNPFGTIVEDRVWYKMKIST IVDYYHTIHKTGYFAPYDPYFDCFVLFHPGLGHPASSHEWEETLPQLLETKIPIISTGYTQFDLERDVEWVHKTS KGEFDVLLEPGENRFRSLRWDLNDMDPQDISCGNWGVWAFRGKRYETTTRDP* |
| Coding | >Hirsu2|37 ATGCTGCGCAGGACGACACGGGGGCTGTGCGGGCGTTGCTCTGCGTCTCTGCGCAAGCAAACAGCCGCCGGGGGC TTCGCAAAGTCGTGGAACAAGGCCTCCCCGGGCGCTACCAAGTCAGCGGTATCGGCTGGCGCGCAACACCGAGCT TGGGCCCGTGAGCCGGCCACGAGAGCTCGAGCTTTCACGACCAGCTCGAAATCGAACAACGAAGCGGCCTCTCCT GAGAGCCTCCTCAAGCCCGCGTCATTAAGACTGAAATCGGACGACCTGTTCCACCCATTCTCGTCCTCTCCCGTC CCCGAGTTCAGGCGCCGGGCCGCCTTCATGAGACAACATGCCTTCTGCCCGCACCCAGATCACAAGCCGACCCGG CTGCCAACCGTCGGACCGGGGCCGGGAAGCGCCGCAGAGGCGGGCGGGGACAGGCCTCCGGCGCACGTCAGCTAC GAATGTCCCGATTGCGGATTCCCAGTCTACTGCAGCAAGGAGCACTGGATGGACCACTACGACAACCACTTACAG ATCTGCGATACCTTGCGTCAGATCAACGAGGACGATCACGACCTCCGCTCCGGGCGAGTCTTTCACGAGGGGAAC CTGCCGGACGTGCAGCTGGACGAGGCAGCCGTCAACATGACCAACTGGGACACGTTCATGTATACGAGAGAGTTC GAGGCCATCAATTCCGACCGCTCGATGAGACAGATCACGCGTCTCCTGACATATCCCGTCACAATTGGGAGTGTC CTGCACGAACTAAGTCCGTACAGTGTTAGAAAGGGCGAGAGGCTGACGGTGGAAGGCTTGAAGAGCTTGAGTGCG CTGAGGTACAATCTGCACCCTCCCAAAGCCGGACAAGGCGTTGGCATCAACCAGCTGCGACCGGAGCCGCCGCCA GTCAGGCTCTTCGTGCTCGGAGCGCGGGCCGAGTCGTCATTGCCACGAGCGGCATGGGTGCAGCTTGCTCATCTA TTCCCTGAGGCGAGGCTGCACCTCATCTTCATTGGCCCCGAGAGCATGGCAAATAGAGACGACGAGTTTCCGTTG CCGCAGCGGACGCCGTCCAACCCATTTGGCACCATCGTGGAAGATCGCGTCTGGTACAAGATGAAGATCAGCACC ATCGTCGACTATTACCACACCATCCACAAGACGGGCTATTTTGCGCCCTACGATCCATATTTCGACTGTTTCGTC TTGTTCCACCCTGGCCTGGGTCATCCTGCGAGCAGCCACGAATGGGAAGAGACATTGCCGCAATTGCTGGAGACG AAAATACCCATCATCAGCACTGGATACACGCAGTTCGACCTGGAACGCGATGTCGAGTGGGTGCACAAGACGTCC AAGGGGGAGTTTGATGTCCTGCTGGAGCCGGGAGAGAACAGGTTCCGAAGCCTGAGATGGGACCTGAATGACATG GACCCCCAGGACATCAGTTGTGGTAACTGGGGAGTATGGGCCTTTCGAGGCAAGAGATATGAGACGACAACAAGG GACCCCTAA |
| Transcript | >Hirsu2|37 ATGCTGCGCAGGACGACACGGGGGCTGTGCGGGCGTTGCTCTGCGTCTCTGCGCAAGCAAACAGCCGCCGGGGGC TTCGCAAAGTCGTGGAACAAGGCCTCCCCGGGCGCTACCAAGTCAGCGGTATCGGCTGGCGCGCAACACCGAGCT TGGGCCCGTGAGCCGGCCACGAGAGCTCGAGCTTTCACGACCAGCTCGAAATCGAACAACGAAGCGGCCTCTCCT GAGAGCCTCCTCAAGCCCGCGTCATTAAGACTGAAATCGGACGACCTGTTCCACCCATTCTCGTCCTCTCCCGTC CCCGAGTTCAGGCGCCGGGCCGCCTTCATGAGACAACATGCCTTCTGCCCGCACCCAGATCACAAGCCGACCCGG CTGCCAACCGTCGGACCGGGGCCGGGAAGCGCCGCAGAGGCGGGCGGGGACAGGCCTCCGGCGCACGTCAGCTAC GAATGTCCCGATTGCGGATTCCCAGTCTACTGCAGCAAGGAGCACTGGATGGACCACTACGACAACCACTTACAG ATCTGCGATACCTTGCGTCAGATCAACGAGGACGATCACGACCTCCGCTCCGGGCGAGTCTTTCACGAGGGGAAC CTGCCGGACGTGCAGCTGGACGAGGCAGCCGTCAACATGACCAACTGGGACACGTTCATGTATACGAGAGAGTTC GAGGCCATCAATTCCGACCGCTCGATGAGACAGATCACGCGTCTCCTGACATATCCCGTCACAATTGGGAGTGTC CTGCACGAACTAAGTCCGTACAGTGTTAGAAAGGGCGAGAGGCTGACGGTGGAAGGCTTGAAGAGCTTGAGTGCG CTGAGGTACAATCTGCACCCTCCCAAAGCCGGACAAGGCGTTGGCATCAACCAGCTGCGACCGGAGCCGCCGCCA GTCAGGCTCTTCGTGCTCGGAGCGCGGGCCGAGTCGTCATTGCCACGAGCGGCATGGGTGCAGCTTGCTCATCTA TTCCCTGAGGCGAGGCTGCACCTCATCTTCATTGGCCCCGAGAGCATGGCAAATAGAGACGACGAGTTTCCGTTG CCGCAGCGGACGCCGTCCAACCCATTTGGCACCATCGTGGAAGATCGCGTCTGGTACAAGATGAAGATCAGCACC ATCGTCGACTATTACCACACCATCCACAAGACGGGCTATTTTGCGCCCTACGATCCATATTTCGACTGTTTCGTC TTGTTCCACCCTGGCCTGGGTCATCCTGCGAGCAGCCACGAATGGGAAGAGACATTGCCGCAATTGCTGGAGACG AAAATACCCATCATCAGCACTGGATACACGCAGTTCGACCTGGAACGCGATGTCGAGTGGGTGCACAAGACGTCC AAGGGGGAGTTTGATGTCCTGCTGGAGCCGGGAGAGAACAGGTTCCGAAGCCTGAGATGGGACCTGAATGACATG GACCCCCAGGACATCAGTTGTGGTAACTGGGGAGTATGGGCCTTTCGAGGCAAGAGATATGAGACGACAACAAGG GACCCCTAA |
| Gene | >Hirsu2|37 ATGCTGCGCAGGACGACACGGGGGCTGTGCGGGCGTTGCTCTGCGTCTCTGCGCAAGCAAACAGCCGCCGGGGGC TTCGCAAAGTCGTGGAACAAGGCCTCCCCGGGCGCTACCAAGTCAGCGGTATCGGCTGGCGCGCAACACCGAGCT TGGGCCCGTGAGCCGGCCACGAGAGCTCGAGCTTTCACGACCAGCTCGAAATCGAACAACGAAGCGGCCTCTCCT GAGAGCCTCCTCAAGCCCGCGTCATTAAGACTGAAATCGGACGACCTGTTCCACCCATTCTCGTCCTCTCCCGTC CCCGAGTTCAGGCGCCGGGCCGCCTTCATGAGACAACATGCCTTCTGCCCGCACCCAGATCACAAGCCGACCCGG CTGCCAACCGTCGGACCGGGGCCGGGAAGCGCCGCAGAGGCGGGCGGGGACAGGCCTCCGGCGCACGTCAGCTAC GAATGTCCCGATTGCGGATTCCCAGTCTACTGCAGCAAGGAGCACTGGATGGACCACTACGACAACCACTTACAG ATCTGCGATACCTTGCGTCAGATCAACGAGGACGATCACGACCTCCGCTCCGGGCGAGTCTTTCACGAGGGGAAC CTGCCGGACGTGCAGCTGGACGAGGCAGCCGTCAACATGACCAACTGGGACACGTTCATGTATACGAGAGAGTTC GAGGCCATCAATTCCGACCGCTCGATGAGACAGATCACGCGTCTCCTGACATATCCCGTCACAATTGGGAGTGTC CTGCACGAACTAAGTCCGTACAGTGTTAGAAAGGGCGAGAGGCTGACGGTGGAAGGCTTGAAGAGCTTGAGTGGT GAGTGCTCGCACTTGGCAGCAACCTTCCGGCAAGAAAATTTGGTCTGACCAGTCATAGCGCTGAGGTACAATCTG CACCCTCCCAAAGCCGGACAAGGCGTTGGCATCAACCAGCTGCGACCGGAGCCGCCGCCAGTCAGGCTCTTCGTG CTCGGAGCGCGGGCCGAGTCGTCATTGCCACGAGCGGCATGGGTGCAGCTTGCTCATCTATTCCCTGAGGCGAGG CTGCACCTCATCTTCATTGGCCCCGAGAGCATGGCAAATAGAGACGACGAGTTTCCGTTGCCGCAGCGGACGCCG TCCAACCCATTTGGCACCATCGTGGAAGATCGCGTCTGGTACAAGATGAAGATCAGCACCATCGTCGACTATTAC CACACCATCCACAAGACGGGCTATTTTGCGCCCTACGATCCATATTTCGACTGTTTCGTCTTGTTCCACCCTGGC CTGGGTCATCCTGCGAGCAGCCACGAATGGGAAGAGACATTGCCGCAATTGCTGGAGACGAAAATACCCATCATC AGCACTGGATACACGCAGTTCGACCTGGAACGCGATGTCGAGTGGGTGCACAAGACGTCCAAGGGGGAGTTTGAT GTCCTGCTGGAGCCGGGAGAGAACAGGTTCCGAAGCCTGAGATGGGACCTGAATGACATGGACCCCCAGGACATC AGTTGTGGTAACTGGGGAGTATGGGCCTTTCGAGGCAAGAGGTACATTCCCAATGGCCCTTTGCACGGAATCGAT CGTGGACGAAATGCTGACAACTGATTTCCAGATATGAGACGACAACAAGGGACCCCTAA |