© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3696 |
| Gene name | |
| Location | Contig_1998:2726..3574 |
| Strand | - |
| Gene length (bp) | 848 |
| Transcript length (bp) | 507 |
| Coding sequence length (bp) | 507 |
| Protein length (aa) | 169 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02936 | COX4 | Cytochrome c oxidase subunit IV | 2.4E-49 | 27 | 163 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P06810|COX5_NEUCR | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cya-4 PE=3 SV=2 | 1 | 164 | 3.0E-68 |
| sp|O93980|COX5_ASPNG | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Aspergillus niger GN=cox5 PE=3 SV=1 | 18 | 165 | 3.0E-61 |
| sp|O74988|COX5_SCHPO | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox5 PE=3 SV=2 | 30 | 161 | 3.0E-36 |
| sp|P00425|COX5B_YEAST | Cytochrome c oxidase polypeptide 5B, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX5B PE=1 SV=3 | 9 | 151 | 1.0E-25 |
| sp|P00424|COX5A_YEAST | Cytochrome c oxidase polypeptide 5A, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX5A PE=1 SV=1 | 9 | 151 | 2.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P06810|COX5_NEUCR | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cya-4 PE=3 SV=2 | 1 | 164 | 3.0E-68 |
| sp|O93980|COX5_ASPNG | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Aspergillus niger GN=cox5 PE=3 SV=1 | 18 | 165 | 3.0E-61 |
| sp|O74988|COX5_SCHPO | Cytochrome c oxidase polypeptide 5, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox5 PE=3 SV=2 | 30 | 161 | 3.0E-36 |
| sp|P00425|COX5B_YEAST | Cytochrome c oxidase polypeptide 5B, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX5B PE=1 SV=3 | 9 | 151 | 1.0E-25 |
| sp|P00424|COX5A_YEAST | Cytochrome c oxidase polypeptide 5A, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX5A PE=1 SV=1 | 9 | 151 | 2.0E-21 |
| sp|P53077|MTC3_YEAST | Maintenance of telomere capping protein 3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTC3 PE=1 SV=1 | 20 | 113 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen | Yes |
| GO:0005751 | mitochondrial respiratory chain complex IV | Yes |
| GO:0008152 | metabolic process | No |
| GO:0098796 | membrane protein complex | No |
| GO:0008150 | biological_process | No |
| GO:0098803 | respiratory chain complex | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0045333 | cellular respiration | No |
| GO:0070069 | cytochrome complex | No |
| GO:0009060 | aerobic respiration | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0009987 | cellular process | No |
| GO:0045277 | respiratory chain complex IV | No |
| GO:0032991 | protein-containing complex | No |
| GO:0022904 | respiratory electron transport chain | No |
| GO:0022900 | electron transport chain | No |
| GO:0019646 | aerobic electron transport chain | No |
| GO:0015980 | energy derivation by oxidation of organic compounds | No |
| GO:0006091 | generation of precursor metabolites and energy | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.0699 | 0.094 | 0.0247 | 0.0572 | 0.9712 | 0.0638 | 0.0515 | 0.0309 | 0.0386 | 0.0174 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 98 | 120 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6112 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3696 MLRTSAFSLLRKGLVRSAPALSRTSSTHAISKPTLANIEKRWEDMPLQEQADLWMALRDRMKGNWNELTIQEKKA AYWIAFGPHGPRAVDPAGTNARIAWGVVLGLGASLAIFGTIRSFARPEPDTMSREYQEAANEMLKQQRADPITGI SSEGYSGRGQIQSPPKGH* |
| Coding | >Hirsu2|3696 ATGCTGCGCACCTCGGCGTTCAGTCTGCTGCGGAAGGGGCTAGTGCGCAGCGCCCCTGCCCTCTCACGAACTTCG TCCACCCATGCTATTTCCAAGCCGACCTTGGCCAACATCGAGAAACGATGGGAGGACATGCCTCTTCAAGAGCAA GCTGACCTTTGGATGGCCCTGCGTGACCGCATGAAGGGCAACTGGAATGAGTTGACCATTCAGGAGAAGAAAGCT GCCTACTGGATTGCATTTGGCCCTCACGGCCCCCGCGCCGTCGACCCCGCAGGGACCAACGCTCGCATTGCTTGG GGCGTCGTGCTAGGCCTCGGCGCCAGCCTGGCTATCTTCGGCACCATCCGATCGTTTGCCAGACCTGAGCCAGAT ACCATGTCACGAGAGTACCAGGAAGCAGCCAATGAGATGCTAAAACAACAAAGAGCGGATCCCATCACCGGTATC TCTTCCGAGGGCTACTCTGGCCGAGGACAGATACAGTCGCCTCCAAAGGGTCACTAA |
| Transcript | >Hirsu2|3696 ATGCTGCGCACCTCGGCGTTCAGTCTGCTGCGGAAGGGGCTAGTGCGCAGCGCCCCTGCCCTCTCACGAACTTCG TCCACCCATGCTATTTCCAAGCCGACCTTGGCCAACATCGAGAAACGATGGGAGGACATGCCTCTTCAAGAGCAA GCTGACCTTTGGATGGCCCTGCGTGACCGCATGAAGGGCAACTGGAATGAGTTGACCATTCAGGAGAAGAAAGCT GCCTACTGGATTGCATTTGGCCCTCACGGCCCCCGCGCCGTCGACCCCGCAGGGACCAACGCTCGCATTGCTTGG GGCGTCGTGCTAGGCCTCGGCGCCAGCCTGGCTATCTTCGGCACCATCCGATCGTTTGCCAGACCTGAGCCAGAT ACCATGTCACGAGAGTACCAGGAAGCAGCCAATGAGATGCTAAAACAACAAAGAGCGGATCCCATCACCGGTATC TCTTCCGAGGGCTACTCTGGCCGAGGACAGATACAGTCGCCTCCAAAGGGTCACTAA |
| Gene | >Hirsu2|3696 ATGCTGCGCACCTCGGCGTTCAGTCTGCTGCGGAAGGGGCTAGTGCGCAGCGCCCCTGCCCTCTCACGAACTTCG TCCACCCATGCTATTTCCAAGCCGACCTTGGCCAACATCGAGAAACGATGGGAGGACATGCCTCTTCAAGAGCAA GCTGACCTTTGGATGGCCCTGCGTGACCGCATGAAGGGCAACTGGAATGAGTTGACCATTCAGGAGAAGAAAGCT GGTGCGTCCTTCGAATAACCCCCCTGTTTTTAGTTGGGAAACAACGAATGCCTGCTTGCTTCATCGCTCTCGTCG ATGCGAACCAGCCCTCGTTCTCTTGTGTTCCACCGCACCGCATGACGTGACATAGTCTCGCGTCAGCGGTCATCT GATTATGAAGACTATTCTCTCTGTTCCCCGTACCTTCCCCCTCGTAGCCGAAGTGTCCATTGGGCCGCAGAAGTC GTGTTGTGACCAAGCGACAAAAATCATATTGCCAGTCTCAGAAACTGACTTGATTCTTGTTACCAGCCTACTGGA TTGCATTTGGCCCTCACGGCCCCCGCGCCGTCGACCCCGCAGGGACCAACGCTCGCATTGCTTGGGGCGTCGTGC TAGGCCTCGGCGCCAGCCTGGCTATCTTCGGCACCATCCGATCGTTTGCCAGACCTGAGCCAGATACCATGTCAC GAGAGTACCAGGAAGCAGCCAATGAGATGCTAAAAGTACGTAGACCTCGTTGTGTTTGAAGGGGCTTTCTGACAC CTACTTTACAGCAACAAAGAGCGGATCCCATCACCGGTATCTCTTCCGAGGGCTACTCTGGCCGAGGACAGATAC AGTCGCCTCCAAAGGGTCACTAA |