Protein ID | Hirsu2|3689 |
Gene name | |
Location | Contig_1995:262..706 |
Strand | - |
Gene length (bp) | 444 |
Transcript length (bp) | 444 |
Coding sequence length (bp) | 444 |
Protein length (aa) | 148 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12937 | F-box-like | F-box-like | 2.6E-06 | 107 | 132 |
PF00646 | F-box | F-box domain | 1.1E-05 | 107 | 132 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.5492 | 0.4523 | 0.1241 | 0.1872 | 0.2495 | 0.116 | 0.2929 | 0.1795 | 0.1746 | 0.0044 |
Orthofinder run ID | 4 |
Orthogroup | 2522 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3689 MMRQDSRAPPPAPYPGQLIMHTGPVVAPAQPMPSSVIVVTVVDPSLPAVGADARVSSRDDDDDDNDEYDYGYSRF TDDIAAAVAAAAAPPPDDGCRRCRPPRPPPLERLPNEVLLHILGFLDVDDLLSASRVRVACPVGPPACLPAR* |
Coding | >Hirsu2|3689 ATGATGCGCCAGGATTCTCGTGCCCCGCCGCCGGCTCCGTATCCCGGCCAGCTCATCATGCACACGGGCCCCGTG GTCGCGCCGGCTCAGCCGATGCCGTCGTCGGTCATCGTCGTCACCGTAGTCGACCCAAGCCTGCCGGCCGTCGGC GCCGATGCCAGGGTCTCGTCCCGCGACGACGACGACGACGACAACGACGAATACGATTACGGCTACAGCCGCTTC ACCGACGATATAGCGGCGGCCGTGGCGGCGGCGGCAGCCCCGCCGCCCGACGACGGCTGCAGGCGATGCCGTCCG CCGCGCCCTCCACCGCTGGAACGGCTGCCGAACGAGGTCTTGCTCCACATCCTCGGCTTCCTGGACGTCGACGAC CTGCTGTCTGCCTCCCGGGTACGTGTTGCCTGCCCCGTCGGCCCGCCCGCCTGCCTTCCTGCCCGCTGA |
Transcript | >Hirsu2|3689 ATGATGCGCCAGGATTCTCGTGCCCCGCCGCCGGCTCCGTATCCCGGCCAGCTCATCATGCACACGGGCCCCGTG GTCGCGCCGGCTCAGCCGATGCCGTCGTCGGTCATCGTCGTCACCGTAGTCGACCCAAGCCTGCCGGCCGTCGGC GCCGATGCCAGGGTCTCGTCCCGCGACGACGACGACGACGACAACGACGAATACGATTACGGCTACAGCCGCTTC ACCGACGATATAGCGGCGGCCGTGGCGGCGGCGGCAGCCCCGCCGCCCGACGACGGCTGCAGGCGATGCCGTCCG CCGCGCCCTCCACCGCTGGAACGGCTGCCGAACGAGGTCTTGCTCCACATCCTCGGCTTCCTGGACGTCGACGAC CTGCTGTCTGCCTCCCGGGTACGTGTTGCCTGCCCCGTCGGCCCGCCCGCCTGCCTTCCTGCCCGCTGA |
Gene | >Hirsu2|3689 ATGATGCGCCAGGATTCTCGTGCCCCGCCGCCGGCTCCGTATCCCGGCCAGCTCATCATGCACACGGGCCCCGTG GTCGCGCCGGCTCAGCCGATGCCGTCGTCGGTCATCGTCGTCACCGTAGTCGACCCAAGCCTGCCGGCCGTCGGC GCCGATGCCAGGGTCTCGTCCCGCGACGACGACGACGACGACAACGACGAATACGATTACGGCTACAGCCGCTTC ACCGACGATATAGCGGCGGCCGTGGCGGCGGCGGCAGCCCCGCCGCCCGACGACGGCTGCAGGCGATGCCGTCCG CCGCGCCCTCCACCGCTGGAACGGCTGCCGAACGAGGTCTTGCTCCACATCCTCGGCTTCCTGGACGTCGACGAC CTGCTGTCTGCCTCCCGGGTACGTGTTGCCTGCCCCGTCGGCCCGCCCGCCTGCCTTCCTGCCCGCTGA |