© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3688 |
| Gene name | |
| Location | Contig_1994:1921..2619 |
| Strand | + |
| Gene length (bp) | 698 |
| Transcript length (bp) | 630 |
| Coding sequence length (bp) | 630 |
| Protein length (aa) | 210 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10447 | EXOSC1 | Exosome component EXOSC1/CSL4 | 1.1E-13 | 117 | 156 |
| PF14382 | ECR1_N | Exosome complex exonuclease RRP4 N-terminal region | 1.4E-11 | 11 | 47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9DAA6|EXOS1_MOUSE | Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=1 SV=1 | 11 | 207 | 7.0E-44 |
| sp|Q9Y3B2|EXOS1_HUMAN | Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1 | 11 | 207 | 9.0E-43 |
| sp|O59821|CSL4_SCHPO | Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csl4 PE=3 SV=2 | 40 | 208 | 1.0E-40 |
| sp|P53859|CSL4_YEAST | Exosome complex component CSL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSL4 PE=1 SV=1 | 1 | 208 | 3.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0000178 | exosome (RNase complex) | Yes |
| GO:1902494 | catalytic complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1905354 | exoribonuclease complex | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005575 | cellular_component | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Peroxisomal targeting signal | 0.7156 | 0.597 | 0.0832 | 0.0162 | 0.1913 | 0.0108 | 0.0815 | 0.0237 | 0.0183 | 0.0297 |
| Orthofinder run ID | 4 |
| Orthogroup | 274 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3688 MTTTEEVPSTAIPGERLGPVTKYAPGPGTHVYEGNVVSSLLGRVTVTPAAAAQGPAKRLNKITAPGPSERATISV SRHGRRREILPDVNNVVLARVVRLMPKQAIVVIQQVGDTVLQTEWQGVIRVQDVRATEKDKVKIHDSFKPGDIVR AQVISLGDQANYYLSTASNELGVIMATSEAGNDMVPISWKEFKDPESGASESRKVAKPS* |
| Coding | >Hirsu2|3688 ATGACGACGACGGAGGAGGTGCCGTCGACGGCCATACCCGGCGAACGGCTTGGCCCCGTCACCAAGTACGCGCCC GGCCCCGGCACGCACGTTTACGAGGGCAACGTGGTCTCGTCGCTGCTGGGACGGGTGACGGTGACGCCGGCGGCG GCGGCGCAGGGCCCCGCGAAGCGGCTGAATAAGATCACGGCGCCGGGGCCGAGCGAGCGGGCCACCATCTCCGTG TCGCGGCACGGGCGCCGGCGCGAGATCCTGCCCGACGTCAACAACGTGGTGCTGGCGCGCGTGGTGCGGCTGATG CCGAAGCAGGCCATCGTCGTGATCCAGCAGGTCGGCGACACGGTGCTGCAGACGGAGTGGCAGGGTGTGATCCGC GTGCAGGACGTCCGGGCGACGGAGAAGGACAAGGTCAAGATACACGACTCGTTCAAGCCGGGCGACATTGTGCGG GCTCAAGTGATTTCGCTCGGCGACCAGGCCAACTACTACCTGTCGACGGCGTCGAACGAGCTGGGCGTCATCATG GCCACGAGCGAAGCTGGCAATGACATGGTCCCCATCAGCTGGAAGGAGTTCAAAGATCCGGAATCGGGCGCGAGC GAGTCGAGAAAGGTTGCCAAGCCCAGCTGA |
| Transcript | >Hirsu2|3688 ATGACGACGACGGAGGAGGTGCCGTCGACGGCCATACCCGGCGAACGGCTTGGCCCCGTCACCAAGTACGCGCCC GGCCCCGGCACGCACGTTTACGAGGGCAACGTGGTCTCGTCGCTGCTGGGACGGGTGACGGTGACGCCGGCGGCG GCGGCGCAGGGCCCCGCGAAGCGGCTGAATAAGATCACGGCGCCGGGGCCGAGCGAGCGGGCCACCATCTCCGTG TCGCGGCACGGGCGCCGGCGCGAGATCCTGCCCGACGTCAACAACGTGGTGCTGGCGCGCGTGGTGCGGCTGATG CCGAAGCAGGCCATCGTCGTGATCCAGCAGGTCGGCGACACGGTGCTGCAGACGGAGTGGCAGGGTGTGATCCGC GTGCAGGACGTCCGGGCGACGGAGAAGGACAAGGTCAAGATACACGACTCGTTCAAGCCGGGCGACATTGTGCGG GCTCAAGTGATTTCGCTCGGCGACCAGGCCAACTACTACCTGTCGACGGCGTCGAACGAGCTGGGCGTCATCATG GCCACGAGCGAAGCTGGCAATGACATGGTCCCCATCAGCTGGAAGGAGTTCAAAGATCCGGAATCGGGCGCGAGC GAGTCGAGAAAGGTTGCCAAGCCCAGCTGA |
| Gene | >Hirsu2|3688 ATGACGACGACGGAGGAGGTGCCGTCGACGGCCATACCCGGCGAACGGCTTGGCCCCGTCACCAAGTACGCGCCC GGCCCCGGCACGCACGTTTACGAGGGCAACGTGGTCTCGTCGCTGCTGGGACGGGTGACGGTGACGCCGGCGGCG GCGGCGCAGGGCCCCGCGAAGCGGCTGAATAAGATCACGGCGCCGGGGCCGAGCGAGCGGGCCACCATCTCCGTG TCGCGGCACGGGCGCCGGCGCGAGATCCTGCCCGACGTCAACAACGTGGTGCTGGCGCGCGTGGTGCGGCTGATG CCGAAGCAGGCCATCGTCGTGATCCAGCAGGTCGGCGACACGGTGCTGCAGACGGAGTGGCAGGGTGTGATCCGC GTGCAGGACGTCCGGGCGACGGAGAAGGACAAGGTCAAGATACACGACTCGTTCAAGCCGGGCGACATTGTGCGG GCTCAAGTGGTAAGCCCGCTTCTTTTCTCGCTGGCCCTCTTGTCGACATGGCCCAGGCTGACACATCCCACGACC AGATTTCGCTCGGCGACCAGGCCAACTACTACCTGTCGACGGCGTCGAACGAGCTGGGCGTCATCATGGCCACGA GCGAAGCTGGCAATGACATGGTCCCCATCAGCTGGAAGGAGTTCAAAGATCCGGAATCGGGCGCGAGCGAGTCGA GAAAGGTTGCCAAGCCCAGCTGA |