© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3685 |
| Gene name | |
| Location | Contig_1992:2690..3684 |
| Strand | + |
| Gene length (bp) | 994 |
| Transcript length (bp) | 846 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04851 | ResIII | Type III restriction enzyme, res subunit | 1.8E-25 | 46 | 208 |
| PF00270 | DEAD | DEAD/DEAH box helicase | 1.1E-11 | 51 | 211 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1MTR1|IRC3_SCHPO | Putative mitochondrial ATP-dependent helicase irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=irc3 PE=3 SV=2 | 47 | 261 | 2.0E-56 |
| sp|Q06683|IRC3_YEAST | Putative ATP-dependent helicase IRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC3 PE=1 SV=1 | 49 | 267 | 6.0E-48 |
| sp|P33919|YEJH_ECOLI | Uncharacterized protein YejH OS=Escherichia coli (strain K12) GN=yejH PE=3 SV=2 | 49 | 176 | 1.0E-06 |
| sp|Q47281|T1RE_ECOLX | Type I restriction enzyme EcoEI R protein OS=Escherichia coli GN=hsdR PE=3 SV=1 | 50 | 238 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043167 | ion binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097367 | carbohydrate derivative binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.117 | 0.1336 | 0.1247 | 0.0516 | 0.9021 | 0.0912 | 0.0306 | 0.0473 | 0.053 | 0.0187 |
| Orthofinder run ID | 4 |
| Orthogroup | 2520 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3685 MMLRIAARCVFRPGPARSARLFRPLGFRAGAATLVTSPGNNIISTKLQLRDYQQECINSVLSSLKHGHKRVGISL ATGSGKTVIFTQLIDKIPSRPCGGDRTLILAHRRELVEQAARHCRLAYPDKTIELEMGSVHASGAADITVASVQS ITSKDRLDKYQSDAFKLVLVDEAHHIVAPGYLRTLQQFGLERKRDRSPVLVGVSATFSRFDGVKLGAAIDEIVYH KDYVDMISDKWLSDVVFTTVKTSANLSKVRNGAFGDFQTGELRRSSSASTWPTWPA* |
| Coding | >Hirsu2|3685 ATGATGCTACGCATCGCTGCAAGATGCGTCTTCCGTCCAGGCCCTGCCAGGAGCGCGCGGCTCTTCCGTCCGCTT GGCTTCAGGGCCGGCGCCGCGACGCTCGTCACGTCGCCGGGCAACAACATCATCAGCACCAAGCTTCAGCTGCGC GACTACCAGCAGGAATGCATCAACTCGGTCCTCTCGTCCCTCAAGCACGGCCACAAGCGCGTCGGCATCTCGCTG GCCACGGGCAGCGGTAAGACGGTCATCTTCACCCAGCTCATCGACAAGATCCCCTCGCGGCCGTGCGGCGGCGAC CGCACGCTCATCCTGGCCCACCGGCGCGAGCTGGTGGAACAGGCGGCGCGGCACTGCCGCCTCGCCTACCCGGAC AAGACGATCGAGCTCGAGATGGGGTCGGTGCACGCGTCGGGGGCGGCCGACATCACCGTCGCCAGCGTCCAGAGC ATCACGTCCAAGGACCGGCTGGACAAGTACCAGTCGGACGCGTTCAAGCTGGTGCTCGTCGACGAGGCCCACCAC ATCGTCGCGCCGGGCTACCTCAGGACGCTGCAGCAGTTCGGGCTCGAGCGGAAGCGGGACCGGTCGCCCGTCCTC GTCGGAGTCTCGGCCACCTTCTCGCGCTTCGACGGCGTCAAGCTGGGCGCGGCCATCGACGAGATCGTCTACCAC AAGGACTACGTCGACATGATCTCGGACAAGTGGCTGTCGGACGTCGTCTTCACCACGGTCAAGACGTCGGCCAAC CTGTCCAAGGTCCGCAACGGCGCCTTCGGCGACTTCCAGACGGGCGAGCTTCGACGCTCGTCTTCTGCGTCGACC TGGCCCACGTGGCCGGCCTGA |
| Transcript | >Hirsu2|3685 ATGATGCTACGCATCGCTGCAAGATGCGTCTTCCGTCCAGGCCCTGCCAGGAGCGCGCGGCTCTTCCGTCCGCTT GGCTTCAGGGCCGGCGCCGCGACGCTCGTCACGTCGCCGGGCAACAACATCATCAGCACCAAGCTTCAGCTGCGC GACTACCAGCAGGAATGCATCAACTCGGTCCTCTCGTCCCTCAAGCACGGCCACAAGCGCGTCGGCATCTCGCTG GCCACGGGCAGCGGTAAGACGGTCATCTTCACCCAGCTCATCGACAAGATCCCCTCGCGGCCGTGCGGCGGCGAC CGCACGCTCATCCTGGCCCACCGGCGCGAGCTGGTGGAACAGGCGGCGCGGCACTGCCGCCTCGCCTACCCGGAC AAGACGATCGAGCTCGAGATGGGGTCGGTGCACGCGTCGGGGGCGGCCGACATCACCGTCGCCAGCGTCCAGAGC ATCACGTCCAAGGACCGGCTGGACAAGTACCAGTCGGACGCGTTCAAGCTGGTGCTCGTCGACGAGGCCCACCAC ATCGTCGCGCCGGGCTACCTCAGGACGCTGCAGCAGTTCGGGCTCGAGCGGAAGCGGGACCGGTCGCCCGTCCTC GTCGGAGTCTCGGCCACCTTCTCGCGCTTCGACGGCGTCAAGCTGGGCGCGGCCATCGACGAGATCGTCTACCAC AAGGACTACGTCGACATGATCTCGGACAAGTGGCTGTCGGACGTCGTCTTCACCACGGTCAAGACGTCGGCCAAC CTGTCCAAGGTCCGCAACGGCGCCTTCGGCGACTTCCAGACGGGCGAGCTTCGACGCTCGTCTTCTGCGTCGACC TGGCCCACGTGGCCGGCCTGA |
| Gene | >Hirsu2|3685 ATGATGCTACGCATCGCTGCAAGATGCGTCTTCCGTCCAGGCCCTGCCAGGAGCGCGCGGCTCTTCCGTCCGCTT GGCTTCAGGGCCGGCGCCGCGACGCTCGTCACGTCGCCGGGCAACAACATCATCAGCACCAAGCTTCAGCTGCGC GACTACCAGCAGGAATGCATCAACTCGGTCCTCTCGTCCCTCAAGCACGGCCACAAGCGCGTCGGCATCTCGCTG GCCACGGGCAGCGGTAAGACGGTAAGGCACTGCGCCCCGGCCGAGCGACGAGGACGACTTTGTGGCTGACGCTCG ATCCTCTCCCGTCGCCAGGTCATCTTCACCCAGCTCATCGACAAGATCCCCTCGCGGCCGTGCGGCGGCGACCGC ACGCTCATCCTGGCCCACCGGCGCGAGCTGGTGGAACAGGCGGCGCGGCACTGCCGCCTCGCCTACCCGGACAAG ACGATCGAGCTCGAGATGGGGTCGGTGCACGCGTCGGGGGCGGCCGACATCACCGTCGCCAGCGTCCAGAGCATC ACGTCCAAGGACCGGCTGGACAAGTACCAGTCGGACGCGTTCAAGCTGGTGCTCGTCGACGAGGCCCACCACATC GTCGCGCCGGGCTACCTCAGGACGCTGCAGCAGTTCGGGCTCGAGCGGAAGCGGGACCGGTCGCCCGTCCTCGTC GGAGTCTCGGCCACCTTCTCGCGCTTCGACGGCGTCAAGCTGGGCGCGGCCATCGACGAGATCGTCTACCACAAG GACTACGTCGACATGATCTCGGACAAGTGGCTGTCGGACGTCGTCTTCACCACGGTCAAGACGTCGGCCAACCTG TCCAAGGTCCGCAACGGCGCCTTCGGCGACTTCCAGACGGGCGAGCTGTCGCGCGTCGTCAACACGGACGAGGTC AACGAGACCATCGTCCGCAGCTGGCTGGCCAAGGCCGAGGGCCGCAAGTCGACGCTCGTCTTCTGCGTCGACCTG GCCCACGTGGCCGGCCTGA |