© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3679 |
| Gene name | |
| Location | Contig_199:23110..24717 |
| Strand | + |
| Gene length (bp) | 1607 |
| Transcript length (bp) | 1548 |
| Coding sequence length (bp) | 1548 |
| Protein length (aa) | 516 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mitochondrion | Mitochondrial transit peptide | 0.1249 | 0.1284 | 0.0412 | 0.059 | 0.8791 | 0.0468 | 0.1295 | 0.0847 | 0.1376 | 0.0748 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 103 | 125 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2517 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3679 MSSWAVATLRPLRASCLRRASRGGLLSLHVGIPSGRIGIQALVVLRPAQRRHRSDKSDAPSPPGPQQSPITFSRF ARRAFGVSLRNLALAVSPRGIRSAYRDSPFVTGTTIVMLVLLVGVSFVAIRAYIRTFYNAELSIYPPPIANTLRR AIYYTKIKPDPELALRLYRKAMEQCTELGLDPFSDEVLGIRIYVSSWLERLCSYTSALDVLESVLGDCRRWVDVM EQAVKDGKVDDAGRYKAAATAPAPEAKAQAGGDAPSDAPSEGVAETETLWRKRERLLAKAIGTSVKLGELYSDEH VLDPDKSHAHLLWAVETSLREFQRRKTQGLRPGEQGWLTPEQLGGSMESLGRDYERRSQFQLAIPLFFQALRLCE SPCHRAVIMNNLSAAFAQHPIYSAGQQPDAAGGLLGGQPPGPAMPATRKECLEAALNWARNAHEHARDVRGDDRT TECDEACAVALCNWADVAAMLGKPQLARAKYDECIDLSRKMDFPQGVRQAQEGLARLTSTAPERI* |
| Coding | >Hirsu2|3679 ATGTCCTCGTGGGCTGTGGCGACGCTGCGGCCGCTCCGGGCGTCGTGTCTGCGGCGCGCCAGCCGCGGCGGTCTG CTGTCGCTCCACGTCGGGATCCCGTCTGGCCGGATCGGCATCCAGGCCCTTGTCGTCCTCCGGCCGGCCCAGAGG CGCCACCGATCGGACAAGTCGGACGCGCCGAGCCCGCCCGGACCGCAGCAGTCGCCCATCACCTTCTCGCGCTTC GCCCGGCGCGCCTTCGGCGTCAGCCTCAGGAACCTGGCGCTTGCTGTCAGCCCGCGCGGCATTCGCTCAGCCTAC CGCGACTCGCCCTTCGTCACGGGCACCACCATCGTCATGCTCGTTCTCCTCGTCGGCGTCTCCTTCGTCGCCATA CGCGCCTACATCCGTACCTTCTACAACGCCGAACTCAGCATATACCCTCCTCCCATCGCCAACACGCTGCGGCGC GCCATCTACTACACCAAGATCAAGCCAGACCCGGAGCTGGCCCTCCGCCTCTACAGGAAGGCCATGGAGCAGTGC ACCGAGCTCGGCCTCGACCCTTTCTCCGATGAGGTGCTGGGCATCCGCATCTACGTCTCGTCCTGGCTGGAGAGG CTCTGCAGTTACACGTCGGCCCTGGACGTGCTCGAATCGGTGCTGGGCGATTGCAGGCGGTGGGTGGACGTGATG GAGCAGGCCGTCAAGGACGGCAAGGTGGACGACGCCGGCCGGTACAAGGCCGCCGCCACGGCGCCCGCTCCCGAG GCCAAGGCGCAGGCCGGCGGGGACGCGCCGTCGGACGCGCCTTCGGAGGGCGTCGCCGAGACGGAGACGCTGTGG CGGAAGCGCGAGCGGCTCCTGGCCAAGGCCATCGGCACCAGCGTCAAGCTCGGCGAGCTCTACTCGGACGAGCAC GTCCTCGACCCCGACAAGTCGCACGCGCACCTGCTCTGGGCCGTCGAGACGTCGCTGCGCGAGTTCCAGCGGCGC AAGACGCAGGGTCTCAGGCCGGGAGAGCAGGGCTGGCTGACGCCCGAGCAGCTGGGCGGCTCGATGGAGTCGCTC GGGCGGGACTACGAGCGGCGGTCGCAGTTCCAGCTGGCCATCCCCCTCTTCTTCCAGGCGCTGCGCCTGTGCGAG AGCCCCTGCCACCGGGCCGTCATCATGAACAACCTGTCGGCCGCCTTCGCGCAGCACCCCATCTACAGCGCGGGG CAGCAGCCCGACGCGGCCGGGGGGCTGCTGGGCGGCCAGCCGCCGGGGCCGGCCATGCCGGCGACGCGCAAGGAG TGCCTGGAGGCGGCGCTCAACTGGGCGCGCAACGCGCACGAGCACGCGCGCGACGTGCGGGGCGACGACCGGACG ACCGAGTGCGACGAGGCCTGCGCCGTGGCGCTGTGCAACTGGGCCGACGTGGCGGCCATGCTGGGCAAGCCGCAG CTGGCGCGGGCCAAGTACGACGAGTGCATCGACCTGAGCCGCAAGATGGACTTTCCGCAGGGCGTCCGGCAGGCT CAGGAAGGGCTCGCCAGGTTGACGTCGACGGCGCCGGAGCGGATTTGA |
| Transcript | >Hirsu2|3679 ATGTCCTCGTGGGCTGTGGCGACGCTGCGGCCGCTCCGGGCGTCGTGTCTGCGGCGCGCCAGCCGCGGCGGTCTG CTGTCGCTCCACGTCGGGATCCCGTCTGGCCGGATCGGCATCCAGGCCCTTGTCGTCCTCCGGCCGGCCCAGAGG CGCCACCGATCGGACAAGTCGGACGCGCCGAGCCCGCCCGGACCGCAGCAGTCGCCCATCACCTTCTCGCGCTTC GCCCGGCGCGCCTTCGGCGTCAGCCTCAGGAACCTGGCGCTTGCTGTCAGCCCGCGCGGCATTCGCTCAGCCTAC CGCGACTCGCCCTTCGTCACGGGCACCACCATCGTCATGCTCGTTCTCCTCGTCGGCGTCTCCTTCGTCGCCATA CGCGCCTACATCCGTACCTTCTACAACGCCGAACTCAGCATATACCCTCCTCCCATCGCCAACACGCTGCGGCGC GCCATCTACTACACCAAGATCAAGCCAGACCCGGAGCTGGCCCTCCGCCTCTACAGGAAGGCCATGGAGCAGTGC ACCGAGCTCGGCCTCGACCCTTTCTCCGATGAGGTGCTGGGCATCCGCATCTACGTCTCGTCCTGGCTGGAGAGG CTCTGCAGTTACACGTCGGCCCTGGACGTGCTCGAATCGGTGCTGGGCGATTGCAGGCGGTGGGTGGACGTGATG GAGCAGGCCGTCAAGGACGGCAAGGTGGACGACGCCGGCCGGTACAAGGCCGCCGCCACGGCGCCCGCTCCCGAG GCCAAGGCGCAGGCCGGCGGGGACGCGCCGTCGGACGCGCCTTCGGAGGGCGTCGCCGAGACGGAGACGCTGTGG CGGAAGCGCGAGCGGCTCCTGGCCAAGGCCATCGGCACCAGCGTCAAGCTCGGCGAGCTCTACTCGGACGAGCAC GTCCTCGACCCCGACAAGTCGCACGCGCACCTGCTCTGGGCCGTCGAGACGTCGCTGCGCGAGTTCCAGCGGCGC AAGACGCAGGGTCTCAGGCCGGGAGAGCAGGGCTGGCTGACGCCCGAGCAGCTGGGCGGCTCGATGGAGTCGCTC GGGCGGGACTACGAGCGGCGGTCGCAGTTCCAGCTGGCCATCCCCCTCTTCTTCCAGGCGCTGCGCCTGTGCGAG AGCCCCTGCCACCGGGCCGTCATCATGAACAACCTGTCGGCCGCCTTCGCGCAGCACCCCATCTACAGCGCGGGG CAGCAGCCCGACGCGGCCGGGGGGCTGCTGGGCGGCCAGCCGCCGGGGCCGGCCATGCCGGCGACGCGCAAGGAG TGCCTGGAGGCGGCGCTCAACTGGGCGCGCAACGCGCACGAGCACGCGCGCGACGTGCGGGGCGACGACCGGACG ACCGAGTGCGACGAGGCCTGCGCCGTGGCGCTGTGCAACTGGGCCGACGTGGCGGCCATGCTGGGCAAGCCGCAG CTGGCGCGGGCCAAGTACGACGAGTGCATCGACCTGAGCCGCAAGATGGACTTTCCGCAGGGCGTCCGGCAGGCT CAGGAAGGGCTCGCCAGGTTGACGTCGACGGCGCCGGAGCGGATTTGA |
| Gene | >Hirsu2|3679 ATGTCCTCGTGGGCTGTGGCGACGCTGCGGCCGCTCCGGGCGTCGTGTCTGCGGCGCGCCAGCCGCGGCGGTCTG CTGTCGCTCCACGTCGGGATCCCGTCTGGCCGGATCGGCATCCAGGCCCTTGTCGTCCTCCGGCCGGCCCAGAGG CGCCACCGATCGGACAAGTCGGACGCGCCGAGCCCGCCCGGACCGCAGCAGTCGCCCATCACCTTCTCGCGCTTC GCCCGGCGCGCCTTCGGCGTCAGCCTCAGGAACCTGGCGCTTGCTGTCAGCCCGCGCGGCATTCGCTCAGCCTAC CGCGACTCGCCCTTCGTCACGGGCACCACCATCGTCATGTGAGTCCCGTCTTGGGCCCCAACGCCGCAAGATGGA CGAGCGAACTGACGGCTTCAAGGCTCGTTCTCCTCGTCGGCGTCTCCTTCGTCGCCATACGCGCCTACATCCGTA CCTTCTACAACGCCGAACTCAGCATATACCCTCCTCCCATCGCCAACACGCTGCGGCGCGCCATCTACTACACCA AGATCAAGCCAGACCCGGAGCTGGCCCTCCGCCTCTACAGGAAGGCCATGGAGCAGTGCACCGAGCTCGGCCTCG ACCCTTTCTCCGATGAGGTGCTGGGCATCCGCATCTACGTCTCGTCCTGGCTGGAGAGGCTCTGCAGTTACACGT CGGCCCTGGACGTGCTCGAATCGGTGCTGGGCGATTGCAGGCGGTGGGTGGACGTGATGGAGCAGGCCGTCAAGG ACGGCAAGGTGGACGACGCCGGCCGGTACAAGGCCGCCGCCACGGCGCCCGCTCCCGAGGCCAAGGCGCAGGCCG GCGGGGACGCGCCGTCGGACGCGCCTTCGGAGGGCGTCGCCGAGACGGAGACGCTGTGGCGGAAGCGCGAGCGGC TCCTGGCCAAGGCCATCGGCACCAGCGTCAAGCTCGGCGAGCTCTACTCGGACGAGCACGTCCTCGACCCCGACA AGTCGCACGCGCACCTGCTCTGGGCCGTCGAGACGTCGCTGCGCGAGTTCCAGCGGCGCAAGACGCAGGGTCTCA GGCCGGGAGAGCAGGGCTGGCTGACGCCCGAGCAGCTGGGCGGCTCGATGGAGTCGCTCGGGCGGGACTACGAGC GGCGGTCGCAGTTCCAGCTGGCCATCCCCCTCTTCTTCCAGGCGCTGCGCCTGTGCGAGAGCCCCTGCCACCGGG CCGTCATCATGAACAACCTGTCGGCCGCCTTCGCGCAGCACCCCATCTACAGCGCGGGGCAGCAGCCCGACGCGG CCGGGGGGCTGCTGGGCGGCCAGCCGCCGGGGCCGGCCATGCCGGCGACGCGCAAGGAGTGCCTGGAGGCGGCGC TCAACTGGGCGCGCAACGCGCACGAGCACGCGCGCGACGTGCGGGGCGACGACCGGACGACCGAGTGCGACGAGG CCTGCGCCGTGGCGCTGTGCAACTGGGCCGACGTGGCGGCCATGCTGGGCAAGCCGCAGCTGGCGCGGGCCAAGT ACGACGAGTGCATCGACCTGAGCCGCAAGATGGACTTTCCGCAGGGCGTCCGGCAGGCTCAGGAAGGGCTCGCCA GGTTGACGTCGACGGCGCCGGAGCGGATTTGA |