Protein ID | Hirsu2|3672 |
Gene name | |
Location | Contig_1989:532..1291 |
Strand | - |
Gene length (bp) | 759 |
Transcript length (bp) | 450 |
Coding sequence length (bp) | 450 |
Protein length (aa) | 150 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF10355 | Ytp1 | Protein of unknown function (Ytp1) | 1.5E-53 | 2 | 123 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O59714|YBH6_SCHPO | Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1 | 2 | 120 | 6.0E-33 |
sp|P25639|YCV1_YEAST | Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2 | 12 | 119 | 7.0E-29 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0802 | 0.224 | 0.1561 | 0.2292 | 0.1491 | 0.0698 | 0.5611 | 0.5194 | 0.4836 | 0.0054 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 15 | 37 | 22 |
2 | 62 | 84 | 22 |
3 | 99 | 121 | 22 |
4 | 128 | 147 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 2513 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3672 MSGIATLGRFFEGEAIFSGLAHWIKGGVFFWLGLFTLGRWTGSFGDLGWAWNVRPQTKLRKWCPTAELVECALIF SYGSTNIFLEHLGHWGGAWRPQDLEHVAITILFIGGGLCGMLVESCRDSRKAASPAWFTSSGAIYCWVLLVLEV* |
Coding | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAAA GGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGCC TGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTTC TCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGAG CATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGTGCGGCATGCTCGTAGAGTCGTGCCGCGACAGTCGC AAAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTCGAGGTCTGA |
Transcript | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAAA GGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGCC TGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTTC TCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGAG CATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGTGCGGCATGCTCGTAGAGTCGTGCCGCGACAGTCGC AAAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTCGAGGTCTGA |
Gene | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGTAAGTTGACTACTGCAACTTCCTATAATGCAGCGCGTTCCG CGTCCCGAGCTTATCTCTCACTGACCGCCCCCAGGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAA AGGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGC CTGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTT CTCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGA GCATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGGTAAGCAGGATTCGTTGACCTCTTCAAGTTCAAGA CTCGAAAATACGCATGCTAACTGACGGCTGCGGCATAGTGCGGCATGCTCGTAGAGTCGTGCCGCGTACGTGACT TGCTTAATACCACTGTTTTGGAGGTATTGCCCGGCGGCGAATTGTCTGAGGAAGGACAGTCGCAAAGGTCTGTTC CGGAAACTTACAAACTCTCCTTGAACCCCATTCCCGCACTCGTCATCTTGATGCTGGGCATTACTATGAGTTCTC ACCAGCAGTCCAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTC GAGGTCTGA |