© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3672 |
| Gene name | |
| Location | Contig_1989:532..1291 |
| Strand | - |
| Gene length (bp) | 759 |
| Transcript length (bp) | 450 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10355 | Ytp1 | Protein of unknown function (Ytp1) | 1.5E-53 | 2 | 123 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59714|YBH6_SCHPO | Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3B8.06 PE=1 SV=1 | 2 | 120 | 6.0E-33 |
| sp|P25639|YCV1_YEAST | Uncharacterized membrane protein YCR061W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR061W PE=1 SV=2 | 12 | 119 | 7.0E-29 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0802 | 0.224 | 0.1561 | 0.2292 | 0.1491 | 0.0698 | 0.5611 | 0.5194 | 0.4836 | 0.0054 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 62 | 84 | 22 |
| 3 | 99 | 121 | 22 |
| 4 | 128 | 147 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 2513 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3672 MSGIATLGRFFEGEAIFSGLAHWIKGGVFFWLGLFTLGRWTGSFGDLGWAWNVRPQTKLRKWCPTAELVECALIF SYGSTNIFLEHLGHWGGAWRPQDLEHVAITILFIGGGLCGMLVESCRDSRKAASPAWFTSSGAIYCWVLLVLEV* |
| Coding | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAAA GGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGCC TGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTTC TCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGAG CATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGTGCGGCATGCTCGTAGAGTCGTGCCGCGACAGTCGC AAAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTCGAGGTCTGA |
| Transcript | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAAA GGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGCC TGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTTC TCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGAG CATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGTGCGGCATGCTCGTAGAGTCGTGCCGCGACAGTCGC AAAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTCGAGGTCTGA |
| Gene | >Hirsu2|3672 ATGTCAGGAATTGCCACCCTCGGTCGCTTTTTTGTAAGTTGACTACTGCAACTTCCTATAATGCAGCGCGTTCCG CGTCCCGAGCTTATCTCTCACTGACCGCCCCCAGGAAGGCGAAGCGATTTTCAGCGGACTGGCACATTGGATCAA AGGCGGTGTTTTTTTCTGGCTAGGCCTCTTTACTCTTGGCCGCTGGACGGGGAGCTTCGGAGACCTTGGCTGGGC CTGGAACGTACGACCGCAAACGAAGCTGCGAAAATGGTGCCCTACGGCTGAACTGGTGGAGTGTGCTCTCATCTT CTCCTACGGCTCCACCAATATCTTCCTCGAGCACCTCGGTCACTGGGGTGGGGCTTGGAGGCCCCAAGACCTGGA GCATGTTGCCATCACAATCTTGTTTATCGGTGGCGGCCTGGTAAGCAGGATTCGTTGACCTCTTCAAGTTCAAGA CTCGAAAATACGCATGCTAACTGACGGCTGCGGCATAGTGCGGCATGCTCGTAGAGTCGTGCCGCGTACGTGACT TGCTTAATACCACTGTTTTGGAGGTATTGCCCGGCGGCGAATTGTCTGAGGAAGGACAGTCGCAAAGGTCTGTTC CGGAAACTTACAAACTCTCCTTGAACCCCATTCCCGCACTCGTCATCTTGATGCTGGGCATTACTATGAGTTCTC ACCAGCAGTCCAGCGGCATCTCCAGCATGGTTCACAAGCAGTGGGGCAATCTACTGCTGGGTGCTTCTTGTGCTC GAGGTCTGA |