Protein ID | Hirsu2|3670 |
Gene name | |
Location | Contig_1987:2163..3930 |
Strand | + |
Gene length (bp) | 1767 |
Transcript length (bp) | 1515 |
Coding sequence length (bp) | 1515 |
Protein length (aa) | 505 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 1.1E-28 | 76 | 314 |
PF00535 | Glycos_transf_2 | Glycosyl transferase family 2 | 3.6E-07 | 78 | 248 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O00219|HYAS3_HUMAN | Hyaluronan synthase 3 OS=Homo sapiens GN=HAS3 PE=2 SV=3 | 116 | 435 | 1.0E-07 |
sp|O08650|HYAS3_MOUSE | Hyaluronan synthase 3 OS=Mus musculus GN=Has3 PE=1 SV=2 | 150 | 435 | 4.0E-07 |
sp|O57424|HYAS2_CHICK | Hyaluronan synthase 2 OS=Gallus gallus GN=HAS2 PE=2 SV=2 | 110 | 435 | 3.0E-06 |
sp|O57427|HYAS2_XENLA | Hyaluronan synthase 2 OS=Xenopus laevis GN=has2 PE=2 SV=2 | 142 | 435 | 7.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Golgi apparatus | Signal peptide|Transmembrane domain | 0.2174 | 0.0749 | 0.283 | 0.3196 | 0.1476 | 0.0088 | 0.5924 | 0.2432 | 0.6462 | 0.0049 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 26 | 45 | 19 |
2 | 339 | 361 | 22 |
3 | 376 | 398 | 22 |
4 | 405 | 427 | 22 |
CAZyme category | E-value | Start | End |
---|---|---|---|
GT2_Glyco_tranf_2_3 | 3.6E-28 | 76 | 314 |
Orthofinder run ID | 4 |
Orthogroup | 2512 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3670 MDDDAAAAAEWLTGIAGRLLASLPPLLSLRFSVTFWAYVFWVLWIHRYVRLIVHCVSHWAYKSKPLPESPEFTEE DVTVVIPTIHNFFPDLEPSLSSILNCNPAKLILVTTSAKRDSLEDLAKSLSQRYPGRIRVLATDIANKRRQVCAA LPEVATKITVMADDDVTWPRTMLPWILAPFQDASMGGVGTCQRVKRERSGPWATRAWNWLGAAYIERRNFEISAT HNIDGGTSCMSGRTGAYRSSILQSPEFLEGFTNEKWRKWNLNADDDNFVTRWLVSNRWKTWIQYSHECELETTLE NDHKFLYQCSRWARSNWRSNWTSLFRDRHVWRQQPWCTYALHIATFTSLAFAIDPLLLASCWWATGGWETRQRLC AFWAQFVFMFAFTKVVKLMGLFVRNPGDLVFLPVSIAFGYFHGLIKLYALWTLNMTAWGSRADGDTHDRVRMSPA QQSPTLKGPPGPDMTIPLYNTPGGRQASSRGGSAGSALEKHLGGHMPAAAFRQS* |
Coding | >Hirsu2|3670 ATGGACGACGACGCCGCCGCCGCCGCCGAATGGCTGACGGGCATCGCAGGCCGCCTGCTCGCCAGCCTGCCGCCC CTCCTCAGCCTCCGCTTCTCCGTCACTTTCTGGGCCTACGTCTTCTGGGTCTTATGGATCCATCGCTACGTACGC CTCATCGTCCACTGCGTCAGCCACTGGGCCTACAAGTCCAAGCCGCTGCCGGAGAGCCCCGAATTCACCGAAGAG GACGTGACGGTCGTCATCCCGACCATCCACAACTTCTTCCCCGACCTGGAGCCGTCGCTCTCGAGCATCCTCAAC TGCAACCCCGCCAAGCTGATCCTGGTGACGACGTCGGCCAAGCGCGACAGCCTCGAAGACCTGGCCAAGTCGCTG TCGCAGCGGTACCCGGGCCGGATCCGCGTCCTCGCCACCGACATCGCCAACAAGAGGCGACAGGTCTGCGCGGCC CTGCCCGAGGTCGCGACCAAGATCACCGTCATGGCCGACGACGACGTGACCTGGCCGCGGACCATGCTGCCCTGG ATCCTGGCCCCCTTCCAAGACGCCAGCATGGGCGGCGTCGGGACGTGCCAGCGGGTCAAGCGCGAGCGCTCCGGG CCCTGGGCCACCCGCGCCTGGAACTGGCTCGGGGCCGCCTACATCGAGCGGCGCAACTTTGAGATCTCGGCCACC CACAACATCGACGGCGGCACCTCGTGCATGTCGGGCCGCACCGGCGCCTACCGATCCTCCATCCTGCAGAGCCCC GAGTTCCTCGAGGGCTTCACCAACGAGAAGTGGCGCAAGTGGAACCTCAACGCCGATGACGACAACTTCGTCACC CGCTGGCTCGTCAGCAACCGGTGGAAGACGTGGATCCAGTACAGCCACGAGTGCGAGCTCGAGACGACGCTCGAG AACGACCACAAGTTTCTCTACCAGTGCTCCCGCTGGGCCCGGAGCAACTGGAGGAGCAACTGGACCAGCCTCTTC CGCGACCGGCACGTGTGGAGGCAGCAACCATGGTGCACGTACGCGCTACACATTGCGACTTTCACCTCGCTCGCC TTCGCCATAGACCCCCTGCTGCTGGCCTCGTGCTGGTGGGCGACGGGCGGGTGGGAGACGCGGCAGCGCCTCTGC GCCTTCTGGGCCCAATTCGTCTTCATGTTCGCCTTCACCAAGGTGGTGAAGCTGATGGGGCTCTTCGTCCGCAAC CCGGGCGACCTCGTCTTCCTGCCCGTCTCCATCGCCTTTGGCTACTTCCACGGCCTCATCAAGCTGTACGCGCTG TGGACCTTGAACATGACAGCGTGGGGCAGCCGGGCCGATGGCGATACCCATGACCGTGTGCGGATGTCCCCTGCC CAACAGTCCCCAACGCTCAAGGGACCCCCGGGTCCTGATATGACGATCCCGCTCTACAACACGCCGGGCGGGCGG CAGGCGAGCAGCCGGGGCGGCAGTGCGGGGAGCGCCTTGGAGAAGCACCTTGGCGGCCACATGCCCGCGGCCGCC TTTCGGCAAAGTTGA |
Transcript | >Hirsu2|3670 ATGGACGACGACGCCGCCGCCGCCGCCGAATGGCTGACGGGCATCGCAGGCCGCCTGCTCGCCAGCCTGCCGCCC CTCCTCAGCCTCCGCTTCTCCGTCACTTTCTGGGCCTACGTCTTCTGGGTCTTATGGATCCATCGCTACGTACGC CTCATCGTCCACTGCGTCAGCCACTGGGCCTACAAGTCCAAGCCGCTGCCGGAGAGCCCCGAATTCACCGAAGAG GACGTGACGGTCGTCATCCCGACCATCCACAACTTCTTCCCCGACCTGGAGCCGTCGCTCTCGAGCATCCTCAAC TGCAACCCCGCCAAGCTGATCCTGGTGACGACGTCGGCCAAGCGCGACAGCCTCGAAGACCTGGCCAAGTCGCTG TCGCAGCGGTACCCGGGCCGGATCCGCGTCCTCGCCACCGACATCGCCAACAAGAGGCGACAGGTCTGCGCGGCC CTGCCCGAGGTCGCGACCAAGATCACCGTCATGGCCGACGACGACGTGACCTGGCCGCGGACCATGCTGCCCTGG ATCCTGGCCCCCTTCCAAGACGCCAGCATGGGCGGCGTCGGGACGTGCCAGCGGGTCAAGCGCGAGCGCTCCGGG CCCTGGGCCACCCGCGCCTGGAACTGGCTCGGGGCCGCCTACATCGAGCGGCGCAACTTTGAGATCTCGGCCACC CACAACATCGACGGCGGCACCTCGTGCATGTCGGGCCGCACCGGCGCCTACCGATCCTCCATCCTGCAGAGCCCC GAGTTCCTCGAGGGCTTCACCAACGAGAAGTGGCGCAAGTGGAACCTCAACGCCGATGACGACAACTTCGTCACC CGCTGGCTCGTCAGCAACCGGTGGAAGACGTGGATCCAGTACAGCCACGAGTGCGAGCTCGAGACGACGCTCGAG AACGACCACAAGTTTCTCTACCAGTGCTCCCGCTGGGCCCGGAGCAACTGGAGGAGCAACTGGACCAGCCTCTTC CGCGACCGGCACGTGTGGAGGCAGCAACCATGGTGCACGTACGCGCTACACATTGCGACTTTCACCTCGCTCGCC TTCGCCATAGACCCCCTGCTGCTGGCCTCGTGCTGGTGGGCGACGGGCGGGTGGGAGACGCGGCAGCGCCTCTGC GCCTTCTGGGCCCAATTCGTCTTCATGTTCGCCTTCACCAAGGTGGTGAAGCTGATGGGGCTCTTCGTCCGCAAC CCGGGCGACCTCGTCTTCCTGCCCGTCTCCATCGCCTTTGGCTACTTCCACGGCCTCATCAAGCTGTACGCGCTG TGGACCTTGAACATGACAGCGTGGGGCAGCCGGGCCGATGGCGATACCCATGACCGTGTGCGGATGTCCCCTGCC CAACAGTCCCCAACGCTCAAGGGACCCCCGGGTCCTGATATGACGATCCCGCTCTACAACACGCCGGGCGGGCGG CAGGCGAGCAGCCGGGGCGGCAGTGCGGGGAGCGCCTTGGAGAAGCACCTTGGCGGCCACATGCCCGCGGCCGCC TTTCGGCAAAGTTGA |
Gene | >Hirsu2|3670 ATGGACGACGACGCCGCCGCCGCCGCCGAATGGCTGACGGGCATCGCAGGCCGCCTGCTCGCCAGCCTGCCGCCC CTCCTCAGCCTCCGCTTCTCCGTCACTTTCTGGGCCTACGTCTTCTGGGTCTTATGGTGTGTTTCGAGACCTTGC TTGACCTGGCCCCTGGTGGCCTGGCCCCCCCCCCCCCCCAGAGCGGCCACCGATTGGCCCGTGTTAACGCAATCT TCAGGATCCATCGCTACGTACGCCTCATCGTCCACTGCGTCAGCCACTGGGCCTACAAGTCCAAGCCGCTGCCGG AGAGCCCCGAATTCACCGAAGAGGACGTGACGGTCGTCATCCCGACCATCCACAACTTCTTCCCCGACCTGGAGC CGTCGCTCTCGAGCATCCTCAACTGCAACCCCGCCAAGCTGATCCTGGTGACGACGTCGGCCAAGCGCGACAGCC TCGAAGACCTGGCCAAGTCGCTGTCGCAGCGGTACCCGGGCCGGATCCGCGTCCTCGCCACCGACATCGCCAACA AGAGGCGACAGGTCTGCGCGGCCCTGCCCGAGGTCGCGACCAAGATCACCGTCATGGCCGACGACGACGTGACCT GGCCGCGGACCATGCTGCCCTGGATCCTGGCCCCCTTCCAAGACGCCAGCATGGGCGGCGTCGGGACGTGCCAGC GGGTCAAGCGCGAGCGCTCCGGGCCCTGGGCCACCCGCGCCTGGAACTGGCTCGGGGCCGCCTACATCGAGCGGC GCAACTTTGAGATCTCGGCCACCCACAACATCGACGGCGGCACCTCGTGCATGTCGGGCCGCACCGGCGCCTACC GATCCTCCATCCTGCAGAGCCCCGAGTTCCTCGAGGGCTTCACCAACGAGAAGTGGCGCAAGTGGAACCTCAACG CCGATGACGACAACTTCGTCACCCGCTGGCTCGTCAGCAACCGGTGGAAGACGTGGATCCAGTACAGCCACGAGT GCGAGCTCGAGACGACGCTCGAGAACGACCACAAGTTTCTCTACCAGTGCTCCCGCTGGGCCCGGAGCAACTGGA GGAGCAACTGGACCAGCCTCTTCCGCGACCGGCACGTGTGGAGGTATGTGTGTGCATCGCACGCGGATTGGGCGT GTCCATGTCGGCGCTGACGCATCTCGCTCTACGTGCAGGCAGCAACCATGGTGCACGTACGCGCTACACATTGCG ACTTTCACCTCGCTCGCCTTCGCCATAGACCCCCTGCTGCTGGCCTCGTGCTGGTGGGCGACGGGCGGGTGGGAG ACGCGGCAGCGCCTCTGCGCCTTCTGGGCCCAATTCGTCTTCATGTTCGCCTTCACCAAGGTGGTGAAGCTGATG GGGCTCTTCGTCCGCAACCCGGGCGACCTCGTCTTCCTGCCCGTCTCCATCGCCTTTGGCTACTTCCACGGCCTC ATCAAGCTGTACGCGCTGTGGACCTTGAACATGGTATGTCGTCGGCGGAAACCCCCCGACTTGCCCTGCCCCCTT TTTGCACCAGGCCGCCCAGCTGACCACCCACACCGGTGGCAGACAGCGTGGGGCAGCCGGGCCGATGGCGATACC CATGACCGTGTGCGGATGTCCCCTGCCCAACAGTCCCCAACGCTCAAGGGACCCCCGGGTCCTGATATGACGATC CCGCTCTACAACACGCCGGGCGGGCGGCAGGCGAGCAGCCGGGGCGGCAGTGCGGGGAGCGCCTTGGAGAAGCAC CTTGGCGGCCACATGCCCGCGGCCGCCTTTCGGCAAAGTTGA |