© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3660 |
| Gene name | |
| Location | Contig_198:22216..23003 |
| Strand | - |
| Gene length (bp) | 787 |
| Transcript length (bp) | 420 |
| Coding sequence length (bp) | 420 |
| Protein length (aa) | 140 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5702 | 0.3587 | 0.4978 | 0.1217 | 0.324 | 0.106 | 0.1461 | 0.1848 | 0.2198 | 0.0944 |
| Orthofinder run ID | 4 |
| Orthogroup | 9399 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3660 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3660 MLLWCWTGANIAASETVDKIHAPCRKLGRGTQPYSRLDQGQTENSNRRLPPLLEPDSTISFVSAAEFITRQRDPA AVERGLRGLDEPISKNGGGVDNGWLARPADDTLRVFAYSMSDMTALLRGPTLVRDQAVAVGGCK* |
| Coding | >Hirsu2|3660 ATGCTTCTGTGGTGCTGGACTGGAGCCAACATCGCTGCAAGTGAGACAGTTGACAAGATCCACGCTCCTTGTCGG AAACTCGGCCGCGGAACACAACCCTACAGTCGTCTCGACCAAGGCCAAACTGAGAACAGCAACCGTCGTCTGCCG CCGCTTCTCGAACCGGACAGCACCATCTCGTTTGTGTCGGCTGCCGAATTCATCACCCGTCAGCGCGACCCTGCA GCGGTGGAGCGCGGCCTGCGCGGACTCGACGAGCCCATCTCCAAGAACGGTGGTGGAGTGGACAACGGATGGCTG GCGCGTCCCGCGGACGACACGTTGCGAGTCTTCGCCTACAGTATGTCGGACATGACCGCCCTCCTGAGAGGACCT ACTCTCGTCCGTGACCAAGCTGTTGCCGTTGGGGGATGCAAATGA |
| Transcript | >Hirsu2|3660 ATGCTTCTGTGGTGCTGGACTGGAGCCAACATCGCTGCAAGTGAGACAGTTGACAAGATCCACGCTCCTTGTCGG AAACTCGGCCGCGGAACACAACCCTACAGTCGTCTCGACCAAGGCCAAACTGAGAACAGCAACCGTCGTCTGCCG CCGCTTCTCGAACCGGACAGCACCATCTCGTTTGTGTCGGCTGCCGAATTCATCACCCGTCAGCGCGACCCTGCA GCGGTGGAGCGCGGCCTGCGCGGACTCGACGAGCCCATCTCCAAGAACGGTGGTGGAGTGGACAACGGATGGCTG GCGCGTCCCGCGGACGACACGTTGCGAGTCTTCGCCTACAGTATGTCGGACATGACCGCCCTCCTGAGAGGACCT ACTCTCGTCCGTGACCAAGCTGTTGCCGTTGGGGGATGCAAATGA |
| Gene | >Hirsu2|3660 ATGCTTCTGTGGTGCTGGACTGGAGCCAACATCGCTGCAAGTGAGACAGTTGACAAGATCCACGCTCCTTGTCGG AAACTCGGCCGCGGAACACAACCCTGTATGTATGTATGCGTTGAAGGCCCGGAGACGGAGGGCCCGAGGGTACCA GCTGCTGACCATCGGCCCGTATATGTCATAATGAGCCTTCCCCCAATAGATCCAAAGTCGCCTTGGGATTGAACG CATCCTCATCGGCGAAGGCTTTCAGCTGTAGTTGCTGAAGTCGATCGGAGCGAGTCCACATGCCAATGAGGTAGG CCCTCTTTGACTTTCTATCTCTCTGTGTATGTCTCATCGTCGGGATGGAGGATTATGAGACAAGGCTCGCGGACG CAACAGAAAGAGAGGGCGGGTAGTTACATGGTGGGTGCTATCGGGCTGGTGGTCGATAATCTCGGTATGGAAGAC ACGTCTTGGGTGAACAGACAGTCGTCTCGACCAAGGCCAAACTGAGAACAGCAACCGTCGTCTGCCGCCGCTTCT CGAACCGGACAGCACCATCTCGTTTGTGTCGGCTGCCGAATTCATCACCCGTCAGCGCGACCCTGCAGCGGTGGA GCGCGGCCTGCGCGGACTCGACGAGCCCATCTCCAAGAACGGTGGTGGAGTGGACAACGGATGGCTGGCGCGTCC CGCGGACGACACGTTGCGAGTCTTCGCCTACAGTATGTCGGACATGACCGCCCTCCTGAGAGGACCTACTCTCGT CCGTGACCAAGCTGTTGCCGTTGGGGGATGCAAATGA |