© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3659 |
| Gene name | |
| Location | Contig_198:18711..19690 |
| Strand | - |
| Gene length (bp) | 979 |
| Transcript length (bp) | 915 |
| Coding sequence length (bp) | 915 |
| Protein length (aa) | 305 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02212 | GED | Dynamin GTPase effector domain | 1.6E-06 | 212 | 302 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003924 | GTPase activity | Yes |
| GO:0005525 | GTP binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0005488 | binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0043167 | ion binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0017076 | purine nucleotide binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5695 | 0.5406 | 0.0237 | 0.2579 | 0.1421 | 0.0116 | 0.1983 | 0.3848 | 0.1788 | 0.1027 |
| Orthofinder run ID | 4 |
| Orthogroup | 55 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3659 MISFEAPSDGEKDSDTNEITTPVPFEIPLAKYRNELDKIVHVEEYRCPKPQDGPFMKRIREIFDASRGPDIGTFG GTVLSTAFEEQSEKWEPLTLSHISQTIVVVHDYILQLLRHLVSEEEILEELWVGFLADKIKELYHKAMEHARFLL TIERGRPMTFNSYFSEGLQERRSKRRASSVEETPQAWRHGRADSKRQHHIHTTDEQGSQKNEQQMCEDILDTFMS YYRVACKRFVDVVFQQAISHFLLNGDDSPLKAFGPDMVMELTGDQLKQIAGEDEESIHRRALLSKEIENLQAALK VLRG* |
| Coding | >Hirsu2|3659 ATGATCAGTTTCGAAGCACCATCAGACGGAGAAAAAGACTCTGACACGAATGAAATAACCACGCCGGTGCCTTTC GAGATTCCGCTTGCAAAATACCGCAACGAACTGGACAAAATTGTCCATGTGGAGGAGTATCGATGCCCCAAGCCC CAGGATGGACCCTTCATGAAGCGTATCAGGGAGATCTTTGACGCAAGCCGCGGACCCGATATTGGAACGTTTGGC GGAACCGTTCTGTCGACCGCTTTTGAAGAGCAGTCCGAAAAGTGGGAGCCTCTGACGCTATCCCATATCAGCCAA ACCATCGTAGTTGTGCACGACTATATCCTTCAGCTCCTTCGCCATCTCGTGTCGGAAGAAGAGATTCTCGAAGAG CTGTGGGTTGGCTTTTTGGCTGATAAGATCAAAGAGCTGTACCATAAGGCAATGGAACACGCTCGGTTCCTTTTG ACCATCGAACGCGGACGGCCCATGACTTTCAACAGCTACTTCAGCGAGGGTCTTCAGGAGAGGCGTAGCAAGAGG CGAGCTTCCTCAGTGGAGGAGACGCCGCAGGCTTGGAGACATGGACGTGCTGATTCTAAGCGGCAGCATCACATC CATACAACGGATGAGCAAGGTTCTCAGAAAAATGAGCAGCAGATGTGCGAGGACATTCTGGACACCTTTATGAGC TACTACAGGGTGGCTTGCAAGCGTTTCGTCGACGTCGTTTTCCAGCAGGCCATCTCGCACTTTCTGCTCAACGGC GACGACAGTCCTCTCAAAGCATTCGGACCTGATATGGTTATGGAACTGACCGGTGACCAGCTCAAGCAGATTGCT GGCGAGGATGAGGAGTCAATTCACAGACGCGCGCTTCTGAGCAAGGAGATTGAGAACCTGCAGGCGGCCTTGAAG GTCTTGCGAGGATAA |
| Transcript | >Hirsu2|3659 ATGATCAGTTTCGAAGCACCATCAGACGGAGAAAAAGACTCTGACACGAATGAAATAACCACGCCGGTGCCTTTC GAGATTCCGCTTGCAAAATACCGCAACGAACTGGACAAAATTGTCCATGTGGAGGAGTATCGATGCCCCAAGCCC CAGGATGGACCCTTCATGAAGCGTATCAGGGAGATCTTTGACGCAAGCCGCGGACCCGATATTGGAACGTTTGGC GGAACCGTTCTGTCGACCGCTTTTGAAGAGCAGTCCGAAAAGTGGGAGCCTCTGACGCTATCCCATATCAGCCAA ACCATCGTAGTTGTGCACGACTATATCCTTCAGCTCCTTCGCCATCTCGTGTCGGAAGAAGAGATTCTCGAAGAG CTGTGGGTTGGCTTTTTGGCTGATAAGATCAAAGAGCTGTACCATAAGGCAATGGAACACGCTCGGTTCCTTTTG ACCATCGAACGCGGACGGCCCATGACTTTCAACAGCTACTTCAGCGAGGGTCTTCAGGAGAGGCGTAGCAAGAGG CGAGCTTCCTCAGTGGAGGAGACGCCGCAGGCTTGGAGACATGGACGTGCTGATTCTAAGCGGCAGCATCACATC CATACAACGGATGAGCAAGGTTCTCAGAAAAATGAGCAGCAGATGTGCGAGGACATTCTGGACACCTTTATGAGC TACTACAGGGTGGCTTGCAAGCGTTTCGTCGACGTCGTTTTCCAGCAGGCCATCTCGCACTTTCTGCTCAACGGC GACGACAGTCCTCTCAAAGCATTCGGACCTGATATGGTTATGGAACTGACCGGTGACCAGCTCAAGCAGATTGCT GGCGAGGATGAGGAGTCAATTCACAGACGCGCGCTTCTGAGCAAGGAGATTGAGAACCTGCAGGCGGCCTTGAAG GTCTTGCGAGGATAA |
| Gene | >Hirsu2|3659 ATGATCAGTTTCGAAGCACCATCAGACGGAGAAAAAGACTCTGACACGAATGAAATAACCACGCCGGTGCCTTTC GAGATTCCGCTTGCAAAATACCGCAACGAACTGGACAAAATTGTCCATGTGGAGGAGTATCGATGCCCCAAGCCC CAGGATGGACCCTTCATGAAGCGTATCAGGGAGATCTTTGACGCAAGCCGCGGACCCGATATTGGAACGGTAAGT CAATAGGCTCTGAATTCCTATAATCAGACGTTCCCCGTGCTAACTGCTTCTCTGCTAGTTTGGCGGAACCGTTCT GTCGACCGCTTTTGAAGAGCAGTCCGAAAAGTGGGAGCCTCTGACGCTATCCCATATCAGCCAAACCATCGTAGT TGTGCACGACTATATCCTTCAGCTCCTTCGCCATCTCGTGTCGGAAGAAGAGATTCTCGAAGAGCTGTGGGTTGG CTTTTTGGCTGATAAGATCAAAGAGCTGTACCATAAGGCAATGGAACACGCTCGGTTCCTTTTGACCATCGAACG CGGACGGCCCATGACTTTCAACAGCTACTTCAGCGAGGGTCTTCAGGAGAGGCGTAGCAAGAGGCGAGCTTCCTC AGTGGAGGAGACGCCGCAGGCTTGGAGACATGGACGTGCTGATTCTAAGCGGCAGCATCACATCCATACAACGGA TGAGCAAGGTTCTCAGAAAAATGAGCAGCAGATGTGCGAGGACATTCTGGACACCTTTATGAGCTACTACAGGGT GGCTTGCAAGCGTTTCGTCGACGTCGTTTTCCAGCAGGCCATCTCGCACTTTCTGCTCAACGGCGACGACAGTCC TCTCAAAGCATTCGGACCTGATATGGTTATGGAACTGACCGGTGACCAGCTCAAGCAGATTGCTGGCGAGGATGA GGAGTCAATTCACAGACGCGCGCTTCTGAGCAAGGAGATTGAGAACCTGCAGGCGGCCTTGAAGGTCTTGCGAGG ATAA |