Protein ID | Hirsu2|3642 |
Gene name | |
Location | Contig_1970:3520..4113 |
Strand | - |
Gene length (bp) | 593 |
Transcript length (bp) | 519 |
Coding sequence length (bp) | 519 |
Protein length (aa) | 173 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06984 | MRP-L47 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | 1.5E-19 | 9 | 100 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q2H080|RM04_CHAGB | 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MRPL4 PE=3 SV=1 | 1 | 143 | 1.0E-42 |
sp|A7EWR0|RM04_SCLS1 | 54S ribosomal protein L4, mitochondrial OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=MRPL4 PE=3 SV=1 | 1 | 155 | 5.0E-41 |
sp|A6SLT9|RM04_BOTFB | 54S ribosomal protein L4, mitochondrial OS=Botryotinia fuckeliana (strain B05.10) GN=mrpl4 PE=3 SV=1 | 1 | 129 | 3.0E-38 |
sp|Q7S910|RM04_NEUCR | 54S ribosomal protein L4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrpl-4 PE=3 SV=2 | 1 | 131 | 4.0E-38 |
sp|A4RHR8|RM04_MAGO7 | 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MRPL4 PE=3 SV=1 | 3 | 140 | 7.0E-34 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q2H080|RM04_CHAGB | 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MRPL4 PE=3 SV=1 | 1 | 143 | 1.0E-42 |
sp|A7EWR0|RM04_SCLS1 | 54S ribosomal protein L4, mitochondrial OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=MRPL4 PE=3 SV=1 | 1 | 155 | 5.0E-41 |
sp|A6SLT9|RM04_BOTFB | 54S ribosomal protein L4, mitochondrial OS=Botryotinia fuckeliana (strain B05.10) GN=mrpl4 PE=3 SV=1 | 1 | 129 | 3.0E-38 |
sp|Q7S910|RM04_NEUCR | 54S ribosomal protein L4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrpl-4 PE=3 SV=2 | 1 | 131 | 4.0E-38 |
sp|A4RHR8|RM04_MAGO7 | 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MRPL4 PE=3 SV=1 | 3 | 140 | 7.0E-34 |
sp|Q0CXX1|RM04_ASPTN | 54S ribosomal protein L4, mitochondrial OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mrpl4 PE=3 SV=1 | 7 | 112 | 1.0E-30 |
sp|A6RDX3|RM04_AJECN | 54S ribosomal protein L4, mitochondrial OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=MRPL4 PE=3 SV=1 | 2 | 144 | 4.0E-30 |
sp|Q0U6J9|RM04_PHANO | 54S ribosomal protein L4, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MRPL4 PE=3 SV=2 | 7 | 130 | 5.0E-30 |
sp|A1C6F8|RM04_ASPCL | 54S ribosomal protein L4, mitochondrial OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=mrpl4 PE=3 SV=1 | 7 | 113 | 2.0E-29 |
sp|Q1DNY5|RM04_COCIM | 54S ribosomal protein L4, mitochondrial OS=Coccidioides immitis (strain RS) GN=MRPL4 PE=3 SV=1 | 2 | 110 | 2.0E-29 |
sp|A1DH31|RM04_NEOFI | 54S ribosomal protein L4, mitochondrial OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=mrpl4 PE=3 SV=1 | 7 | 113 | 8.0E-29 |
sp|Q4X156|RM04_ASPFU | 54S ribosomal protein L4, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrpl4 PE=3 SV=1 | 7 | 112 | 4.0E-28 |
sp|Q5B0N3|RM04_EMENI | 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mrpl4 PE=3 SV=1 | 7 | 112 | 4.0E-28 |
sp|A2QCC7|RM04_ASPNC | 54S ribosomal protein L4, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mrpl4 PE=3 SV=1 | 7 | 112 | 2.0E-27 |
sp|Q6CF20|RM04_YARLI | 54S ribosomal protein L4, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MRPL4 PE=3 SV=1 | 1 | 166 | 1.0E-16 |
sp|P87232|RM04_SCHPO | 54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl4 PE=3 SV=1 | 3 | 112 | 2.0E-15 |
sp|Q59RP7|RM04_CANAL | 54S ribosomal protein L4, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MRPL4 PE=3 SV=1 | 3 | 100 | 5.0E-15 |
sp|Q6CWC4|RM04_KLULA | 54S ribosomal protein L4, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MRPL4 PE=3 SV=1 | 7 | 100 | 1.0E-14 |
sp|Q6FK61|RM04_CANGA | 54S ribosomal protein L4, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MRPL4 PE=3 SV=1 | 7 | 117 | 1.0E-14 |
sp|Q756Y8|RM04_ASHGO | 54S ribosomal protein L4, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRPL4 PE=3 SV=3 | 1 | 100 | 2.0E-14 |
sp|A5E713|RM04_LODEL | 54S ribosomal protein L4, mitochondrial OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=MRPL4 PE=3 SV=1 | 3 | 105 | 4.0E-14 |
sp|A7TNQ2|RM04_VANPO | 54S ribosomal protein L4, mitochondrial OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MRPL4 PE=3 SV=1 | 7 | 107 | 6.0E-14 |
sp|P36517|RM04_YEAST | 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL4 PE=1 SV=2 | 7 | 100 | 2.0E-12 |
sp|A7A1V9|RM04_YEAS7 | 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=MRPL4 PE=3 SV=1 | 7 | 100 | 2.0E-12 |
sp|A5DH98|RM04_PICGU | 54S ribosomal protein L4, mitochondrial OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MRPL4 PE=3 SV=2 | 3 | 100 | 2.0E-10 |
sp|A3LYY9|RM04_PICST | 54S ribosomal protein L4, mitochondrial OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=MRPL4 PE=3 SV=2 | 3 | 100 | 9.0E-10 |
sp|Q6BQK3|RM04_DEBHA | 54S ribosomal protein L4, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MRPL4 PE=3 SV=2 | 3 | 100 | 3.0E-09 |
sp|Q8K2Y7|RM47_MOUSE | 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=1 SV=2 | 8 | 100 | 2.0E-06 |
sp|Q9HD33|RM47_HUMAN | 39S ribosomal protein L47, mitochondrial OS=Homo sapiens GN=MRPL47 PE=1 SV=2 | 8 | 100 | 2.0E-06 |
sp|Q08DT6|RM47_BOVIN | 39S ribosomal protein L47, mitochondrial OS=Bos taurus GN=MRPL47 PE=2 SV=1 | 8 | 100 | 6.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006412 | translation | Yes |
GO:0005761 | mitochondrial ribosome | Yes |
GO:0003735 | structural constituent of ribosome | Yes |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0043229 | intracellular organelle | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0044271 | cellular nitrogen compound biosynthetic process | No |
GO:0019538 | protein metabolic process | No |
GO:0043226 | organelle | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0009058 | biosynthetic process | No |
GO:0043228 | non-membrane-bounded organelle | No |
GO:0008150 | biological_process | No |
GO:0034645 | cellular macromolecule biosynthetic process | No |
GO:0043232 | intracellular non-membrane-bounded organelle | No |
GO:0000313 | organellar ribosome | No |
GO:0005840 | ribosome | No |
GO:0043604 | amide biosynthetic process | No |
GO:0006518 | peptide metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0005575 | cellular_component | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0003674 | molecular_function | No |
GO:0110165 | cellular anatomical entity | No |
GO:0009987 | cellular process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:1901566 | organonitrogen compound biosynthetic process | No |
GO:0044238 | primary metabolic process | No |
GO:0043603 | cellular amide metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0005198 | structural molecule activity | No |
GO:0043043 | peptide biosynthetic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | Mitochondrial transit peptide | 0.3205 | 0.2402 | 0.0093 | 0.0436 | 0.7554 | 0.01 | 0.031 | 0.0685 | 0.0546 | 0.0062 |
Orthofinder run ID | 4 |
Orthogroup | 5157 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3642 LPVDAAHGLWRFFPAPGKLLWTPREAEQHGRAWTVEELRRKSWEDLHALWWRCCRERNLLATSLAELRRAKLGFG DKEFANRDAEILRTMSSVKHALTERFYTWQDAADVARSDPEIDLAAPDGQVYRPAAVEEDEDGAGADGAWPSEAG PAPETEPETAARAGLSDKEAVR* |
Coding | >Hirsu2|3642 CTGCCCGTCGACGCCGCGCACGGCCTCTGGCGCTTCTTCCCGGCGCCGGGCAAGCTGCTGTGGACGCCGCGCGAG GCCGAGCAGCACGGCCGCGCCTGGACGGTCGAGGAGCTGCGCCGCAAGTCGTGGGAGGACCTGCACGCGCTGTGG TGGCGCTGCTGCCGCGAGCGCAACCTGCTCGCCACCTCGCTGGCCGAGCTGCGCCGCGCCAAGCTCGGCTTCGGC GACAAGGAGTTTGCCAACCGGGACGCCGAGATCTTGAGGACCATGTCGTCCGTCAAGCACGCGCTGACGGAGCGC TTCTACACCTGGCAGGACGCCGCCGACGTCGCCCGCTCCGACCCGGAGATCGACCTCGCCGCGCCCGACGGCCAG GTCTACAGGCCGGCCGCGGTCGAGGAGGACGAGGACGGGGCCGGCGCCGACGGGGCCTGGCCAAGCGAGGCGGGG CCGGCGCCGGAGACGGAGCCGGAGACGGCGGCCCGGGCGGGGCTTTCGGACAAGGAGGCCGTCCGGTGA |
Transcript | >Hirsu2|3642 CTGCCCGTCGACGCCGCGCACGGCCTCTGGCGCTTCTTCCCGGCGCCGGGCAAGCTGCTGTGGACGCCGCGCGAG GCCGAGCAGCACGGCCGCGCCTGGACGGTCGAGGAGCTGCGCCGCAAGTCGTGGGAGGACCTGCACGCGCTGTGG TGGCGCTGCTGCCGCGAGCGCAACCTGCTCGCCACCTCGCTGGCCGAGCTGCGCCGCGCCAAGCTCGGCTTCGGC GACAAGGAGTTTGCCAACCGGGACGCCGAGATCTTGAGGACCATGTCGTCCGTCAAGCACGCGCTGACGGAGCGC TTCTACACCTGGCAGGACGCCGCCGACGTCGCCCGCTCCGACCCGGAGATCGACCTCGCCGCGCCCGACGGCCAG GTCTACAGGCCGGCCGCGGTCGAGGAGGACGAGGACGGGGCCGGCGCCGACGGGGCCTGGCCAAGCGAGGCGGGG CCGGCGCCGGAGACGGAGCCGGAGACGGCGGCCCGGGCGGGGCTTTCGGACAAGGAGGCCGTCCGGTGA |
Gene | >Hirsu2|3642 CTGCCCGTCGACGCCGCGCACGGCCTCTGGCGCTTCTTCCCGGCGCCGGGCAAGCTGCTGTGGACGCCGCGCGAG GCCGAGCAGCACGGCCGCGCCTGGACGGTCGAGGAGCTGCGCCGCAAGTCGTGGGAGGACCTGCACGCGCTGTGG TGGCGCTGCTGCCGCGAGCGCAACCTGCTCGCCACCTCGCTGGCCGAGCTGCGCCGCGCCAAGCTCGGCTTCGGC GACAAGGAGTTTGCCAACCGGGACGCCGAGGTGATTCCCTCGACGGGCGAGACGAACTCTTGGCCCCGAAACCAG GCTGACGACAGGGCGGGGGAGGGGGACAGATCTTGAGGACCATGTCGTCCGTCAAGCACGCGCTGACGGAGCGCT TCTACACCTGGCAGGACGCCGCCGACGTCGCCCGCTCCGACCCGGAGATCGACCTCGCCGCGCCCGACGGCCAGG TCTACAGGCCGGCCGCGGTCGAGGAGGACGAGGACGGGGCCGGCGCCGACGGGGCCTGGCCAAGCGAGGCGGGGC CGGCGCCGGAGACGGAGCCGGAGACGGCGGCCCGGGCGGGGCTTTCGGACAAGGAGGCCGTCCGGTGA |