Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3641
Gene name
LocationContig_1970:742..2671
Strand-
Gene length (bp)1929
Transcript length (bp)1398
Coding sequence length (bp)1398
Protein length (aa) 466

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00996 GDI GDP dissociation inhibitor 5.0E-193 6 453

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1 2 457 0.0E+00
sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1 6 450 3.0E-180
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 6 456 5.0E-168
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 6 456 3.0E-167
sp|O97555|GDIA_CANLF Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1 6 456 3.0E-167
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Swissprot ID Swissprot Description Start End E-value
sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1 2 457 0.0E+00
sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1 6 450 3.0E-180
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 6 456 5.0E-168
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 6 456 3.0E-167
sp|O97555|GDIA_CANLF Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1 6 456 3.0E-167
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1 6 456 3.0E-167
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1 6 456 3.0E-167
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2 6 456 3.0E-167
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1 6 456 6.0E-167
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3 6 456 1.0E-166
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2 6 456 1.0E-164
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2 6 456 2.0E-164
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1 6 456 2.0E-164
sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1 6 456 5.0E-164
sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3 6 456 2.0E-162
sp|O97556|GDIB_CANLF Rab GDP dissociation inhibitor beta OS=Canis lupus familiaris GN=GDI2 PE=2 SV=1 6 456 5.0E-162
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1 6 456 2.0E-160
sp|Q96254|GDI1_ARATH Guanosine nucleotide diphosphate dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1 6 465 4.0E-149
sp|Q9LXC0|GDI_ARATH Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1 6 465 8.0E-149
sp|O24653|GDI2_ARATH Guanosine nucleotide diphosphate dissociation inhibitor 2 OS=Arabidopsis thaliana GN=GDI2 PE=2 SV=1 6 452 7.0E-146
sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1 1 378 9.0E-33
sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2 9 374 4.0E-28
sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 70 385 5.0E-25
sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 77 385 7.0E-24
sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 70 385 1.0E-22
sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 70 385 5.0E-22
sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 70 385 5.0E-22
sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1 9 393 3.0E-21
sp|O60112|YG63_SCHPO Uncharacterized Rab geranylgeranyltransferase C15C4.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.03 PE=3 SV=1 8 269 2.0E-17
sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 2 66 2.0E-07
sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 4 66 9.0E-07
sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 2 66 1.0E-06
sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 2 66 3.0E-06
sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 2 66 3.0E-06
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GO

GO Term Description Terminal node
GO:0007264 small GTPase mediated signal transduction Yes
GO:0005092 GDP-dissociation inhibitor activity Yes
GO:0050789 regulation of biological process No
GO:0009987 cellular process No
GO:0007165 signal transduction No
GO:0060589 nucleoside-triphosphatase regulator activity No
GO:0030695 GTPase regulator activity No
GO:0098772 molecular function regulator activity No
GO:0008150 biological_process No
GO:0030234 enzyme regulator activity No
GO:0065007 biological regulation No
GO:0003674 molecular_function No
GO:0050794 regulation of cellular process No
GO:0035556 intracellular signal transduction No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3641
MEEIAKEYDVIVLGTGLTECILSGVLSVKGKKVLHIDRNNHYGGEAASVNLETLFKKYGNFQKGEEPWKKYGRPN
DWNIDLIPKFLMSSGELTNILVSTDVTRYLEFKQVAGSFVQQGSGPKATVAKVPSDAAEALKSPLMGIFEKRRMK
SFIEWVGTFDLKDPATHKGLDLNTCTMRDVYDKFGLEASTKDFTGHAMALYLTDDYINAKGQAPEAIERIRLYGN
SVARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTNVDELLYDGERAVGIKATMTTGADDMKFETKAKMIL
GDPSYFPAKTRAIGHVLRAICILKHPLAGTNDSDSCQLIIPQSQVGRKNDIYIACVSSAHNVCPKGYWIAIVSTI
AESSANHHLELQPGLDRLGAIEEQFMGPPIPMYEPVEDGTKDHIFMSKSYDATSHFETTTDDVKDIYRRCTGEEL
KVEGLREGITVAAEQ*
Coding >Hirsu2|3641
ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGCCTGACCGAGTGCATCCTCTCCGGTGTC
CTGAGCGTCAAGGGCAAGAAGGTGCTGCACATCGACCGAAACAATCACTACGGCGGAGAGGCCGCCTCCGTGAAT
CTCGAAACGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGAAATACGGCCGCCCCAAC
GACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACATCCTCGTCTCCACCGAC
GTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCGGGCCCAAGGCCACCGTC
GCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCGAGAAGCGCCGGATGAAG
TCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGCCTCGACCTCAACACGTGC
ACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGCCACGCCATGGCCCTC
TACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATCCGCCTCTACGGCAAC
TCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTGCCCCAGGGCTTCGCC
CGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTCTACGACGGCGAACGC
GCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAGGCCAAGATGATCCTC
GGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATCTGCATCCTTAAGCAC
CCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTCGGCCGCAAGAACGAC
ATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGACCATT
GCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCAGTTT
ATGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAGAGCTAC
GACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAGGAGCTC
AAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA
Transcript >Hirsu2|3641
ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGCCTGACCGAGTGCATCCTCTCCGGTGTC
CTGAGCGTCAAGGGCAAGAAGGTGCTGCACATCGACCGAAACAATCACTACGGCGGAGAGGCCGCCTCCGTGAAT
CTCGAAACGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGAAATACGGCCGCCCCAAC
GACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACATCCTCGTCTCCACCGAC
GTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCGGGCCCAAGGCCACCGTC
GCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCGAGAAGCGCCGGATGAAG
TCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGCCTCGACCTCAACACGTGC
ACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGCCACGCCATGGCCCTC
TACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATCCGCCTCTACGGCAAC
TCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTGCCCCAGGGCTTCGCC
CGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTCTACGACGGCGAACGC
GCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAGGCCAAGATGATCCTC
GGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATCTGCATCCTTAAGCAC
CCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTCGGCCGCAAGAACGAC
ATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGACCATT
GCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCAGTTT
ATGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAGAGCTAC
GACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAGGAGCTC
AAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA
Gene >Hirsu2|3641
ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGTGCGTCTTGGTGCCCCCTCTCGAGAGAC
TCGCGCTGATCATCCTCGTCGCCAGGCCTGACCGAGTGCATCCTCTCCGGGTACGACGCGAGCCCTCGGCTGCCC
CGACGAGCCCGCCTGCTGACCGATGATGCCCGCCCGAGCCCAGTGTCCTGAGCGTCAAGGGCAAGAAGGTGCTGC
ACATCGACCGAAACAATCACTACGGCGGGTGCGTCCCCATACTTTTTTTTAGGGACCGAGTCGCTCACATCTCGC
CTCTCTCTGGCTGCTGGAAGCTCCATCGTGTCTCCTCTCCAATTGCCTCTCCTTTGCTGACCTTCTCTCTCTCTC
CCCATCAATTTTTTTCCCTCTCCCCAGAGAGGCCGCCTCCGTGAATCTCGAAACGGTCCGTCTCCACCCTNNCCT
CTGACCTCGCCTCGGCCGCGGAGCAGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGA
AATACGGCCGCCCCAACGACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACA
TCCTCGTCTCCACCGACGTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCG
GGCCCAAGGCCACCGTCGCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCG
AGAAGCGCCGGATGAAGTCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGTC
CGTCTCCCCTCCTCCTCCTCTTCTTCCTCTCCCTCCTCCCTCCTCCCCCGCACTGACCGAGGCTCGCCAGGCCTC
GACCTCAACACGTGCACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGC
CACGCCATGGCCCTCTACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATC
CGCCTCTACGGCAACTCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTG
CCCCAGGGCTTCGCCCGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTC
TACGACGGCGAACGCGCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAG
GCCAAGATGATCCTCGGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATC
TGCATCCTTAAGCACCCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTC
GGCCGCAAGAACGGTAAGCCCGCGCCCGCCACCCGGTCGGGCGTCGCCCGCCCCGCTGACGGCGCCACGCCACGC
AGACATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGAC
CATTGCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCA
GTTTATGGTGAGTGCCGTCGTCGTTTTTTTTGTTTCCCCGAAAAATGGGTACAGACTTGCTCATCCGTGCTGTGA
CCCTAAAAGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAG
AGCTACGACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAG
GAGCTCAAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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