Protein ID | Hirsu2|3641 |
Gene name | |
Location | Contig_1970:742..2671 |
Strand | - |
Gene length (bp) | 1929 |
Transcript length (bp) | 1398 |
Coding sequence length (bp) | 1398 |
Protein length (aa) | 466 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00996 | GDI | GDP dissociation inhibitor | 5.0E-193 | 6 | 453 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P39958|GDI1_YEAST | Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1 | 2 | 457 | 0.0E+00 |
sp|Q10305|GDI1_SCHPO | Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1 | 6 | 450 | 3.0E-180 |
sp|P50398|GDIA_RAT | Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 | 6 | 456 | 5.0E-168 |
sp|Q7YQM0|GDIA_PONPY | Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
sp|O97555|GDIA_CANLF | Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P39958|GDI1_YEAST | Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1 | 2 | 457 | 0.0E+00 |
sp|Q10305|GDI1_SCHPO | Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1 | 6 | 450 | 3.0E-180 |
sp|P50398|GDIA_RAT | Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1 | 6 | 456 | 5.0E-168 |
sp|Q7YQM0|GDIA_PONPY | Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
sp|O97555|GDIA_CANLF | Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
sp|Q8HXX7|GDIA_MACFA | Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
sp|P60028|GDIA_PANTR | Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1 | 6 | 456 | 3.0E-167 |
sp|P31150|GDIA_HUMAN | Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2 | 6 | 456 | 3.0E-167 |
sp|P21856|GDIA_BOVIN | Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1 | 6 | 456 | 6.0E-167 |
sp|P50396|GDIA_MOUSE | Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3 | 6 | 456 | 1.0E-166 |
sp|P50395|GDIB_HUMAN | Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2 | 6 | 456 | 1.0E-164 |
sp|P50399|GDIB_RAT | Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2 | 6 | 456 | 2.0E-164 |
sp|Q61598|GDIB_MOUSE | Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1 | 6 | 456 | 2.0E-164 |
sp|Q5RCE1|GDIB_PONAB | Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1 | 6 | 456 | 5.0E-164 |
sp|P50397|GDIB_BOVIN | Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3 | 6 | 456 | 2.0E-162 |
sp|O97556|GDIB_CANLF | Rab GDP dissociation inhibitor beta OS=Canis lupus familiaris GN=GDI2 PE=2 SV=1 | 6 | 456 | 5.0E-162 |
sp|Q6Q7J2|GDIB_PIG | Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1 | 6 | 456 | 2.0E-160 |
sp|Q96254|GDI1_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1 | 6 | 465 | 4.0E-149 |
sp|Q9LXC0|GDI_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana GN=At5g09550 PE=3 SV=1 | 6 | 465 | 8.0E-149 |
sp|O24653|GDI2_ARATH | Guanosine nucleotide diphosphate dissociation inhibitor 2 OS=Arabidopsis thaliana GN=GDI2 PE=2 SV=1 | 6 | 452 | 7.0E-146 |
sp|Q9V8W3|RABEP_DROME | Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1 | 1 | 378 | 9.0E-33 |
sp|P32864|RAEP_YEAST | Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2 | 9 | 374 | 4.0E-28 |
sp|P26374|RAE2_HUMAN | Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 | 70 | 385 | 5.0E-25 |
sp|Q9QZD5|RAE2_MOUSE | Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 | 77 | 385 | 7.0E-24 |
sp|P24386|RAE1_HUMAN | Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 | 70 | 385 | 1.0E-22 |
sp|Q9QXG2|RAE1_MOUSE | Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 | 70 | 385 | 5.0E-22 |
sp|P37727|RAE1_RAT | Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 | 70 | 385 | 5.0E-22 |
sp|O93831|RAEP_CANAX | Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1 | 9 | 393 | 3.0E-21 |
sp|O60112|YG63_SCHPO | Uncharacterized Rab geranylgeranyltransferase C15C4.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.03 PE=3 SV=1 | 8 | 269 | 2.0E-17 |
sp|Q9QZD5|RAE2_MOUSE | Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2 | 2 | 66 | 2.0E-07 |
sp|P24386|RAE1_HUMAN | Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3 | 4 | 66 | 9.0E-07 |
sp|P26374|RAE2_HUMAN | Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2 | 2 | 66 | 1.0E-06 |
sp|Q9QXG2|RAE1_MOUSE | Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=1 SV=1 | 2 | 66 | 3.0E-06 |
sp|P37727|RAE1_RAT | Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1 | 2 | 66 | 3.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0007264 | small GTPase mediated signal transduction | Yes |
GO:0005092 | GDP-dissociation inhibitor activity | Yes |
GO:0050789 | regulation of biological process | No |
GO:0009987 | cellular process | No |
GO:0007165 | signal transduction | No |
GO:0060589 | nucleoside-triphosphatase regulator activity | No |
GO:0030695 | GTPase regulator activity | No |
GO:0098772 | molecular function regulator activity | No |
GO:0008150 | biological_process | No |
GO:0030234 | enzyme regulator activity | No |
GO:0065007 | biological regulation | No |
GO:0003674 | molecular_function | No |
GO:0050794 | regulation of cellular process | No |
GO:0035556 | intracellular signal transduction | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear export signal | 0.7728 | 0.3704 | 0.0657 | 0.0587 | 0.1748 | 0.0128 | 0.089 | 0.1685 | 0.2101 | 0.0031 |
Orthofinder run ID | 4 |
Orthogroup | 2504 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3641 MEEIAKEYDVIVLGTGLTECILSGVLSVKGKKVLHIDRNNHYGGEAASVNLETLFKKYGNFQKGEEPWKKYGRPN DWNIDLIPKFLMSSGELTNILVSTDVTRYLEFKQVAGSFVQQGSGPKATVAKVPSDAAEALKSPLMGIFEKRRMK SFIEWVGTFDLKDPATHKGLDLNTCTMRDVYDKFGLEASTKDFTGHAMALYLTDDYINAKGQAPEAIERIRLYGN SVARYGKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNTNVDELLYDGERAVGIKATMTTGADDMKFETKAKMIL GDPSYFPAKTRAIGHVLRAICILKHPLAGTNDSDSCQLIIPQSQVGRKNDIYIACVSSAHNVCPKGYWIAIVSTI AESSANHHLELQPGLDRLGAIEEQFMGPPIPMYEPVEDGTKDHIFMSKSYDATSHFETTTDDVKDIYRRCTGEEL KVEGLREGITVAAEQ* |
Coding | >Hirsu2|3641 ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGCCTGACCGAGTGCATCCTCTCCGGTGTC CTGAGCGTCAAGGGCAAGAAGGTGCTGCACATCGACCGAAACAATCACTACGGCGGAGAGGCCGCCTCCGTGAAT CTCGAAACGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGAAATACGGCCGCCCCAAC GACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACATCCTCGTCTCCACCGAC GTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCGGGCCCAAGGCCACCGTC GCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCGAGAAGCGCCGGATGAAG TCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGCCTCGACCTCAACACGTGC ACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGCCACGCCATGGCCCTC TACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATCCGCCTCTACGGCAAC TCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTGCCCCAGGGCTTCGCC CGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTCTACGACGGCGAACGC GCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAGGCCAAGATGATCCTC GGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATCTGCATCCTTAAGCAC CCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTCGGCCGCAAGAACGAC ATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGACCATT GCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCAGTTT ATGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAGAGCTAC GACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAGGAGCTC AAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA |
Transcript | >Hirsu2|3641 ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGCCTGACCGAGTGCATCCTCTCCGGTGTC CTGAGCGTCAAGGGCAAGAAGGTGCTGCACATCGACCGAAACAATCACTACGGCGGAGAGGCCGCCTCCGTGAAT CTCGAAACGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGAAATACGGCCGCCCCAAC GACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACATCCTCGTCTCCACCGAC GTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCGGGCCCAAGGCCACCGTC GCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCGAGAAGCGCCGGATGAAG TCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGCCTCGACCTCAACACGTGC ACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGCCACGCCATGGCCCTC TACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATCCGCCTCTACGGCAAC TCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTGCCCCAGGGCTTCGCC CGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTCTACGACGGCGAACGC GCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAGGCCAAGATGATCCTC GGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATCTGCATCCTTAAGCAC CCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTCGGCCGCAAGAACGAC ATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGACCATT GCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCAGTTT ATGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAGAGCTAC GACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAGGAGCTC AAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA |
Gene | >Hirsu2|3641 ATGGAGGAGATTGCTAAGGAGTACGACGTCATTGTGCTCGGCACCGGTGCGTCTTGGTGCCCCCTCTCGAGAGAC TCGCGCTGATCATCCTCGTCGCCAGGCCTGACCGAGTGCATCCTCTCCGGGTACGACGCGAGCCCTCGGCTGCCC CGACGAGCCCGCCTGCTGACCGATGATGCCCGCCCGAGCCCAGTGTCCTGAGCGTCAAGGGCAAGAAGGTGCTGC ACATCGACCGAAACAATCACTACGGCGGGTGCGTCCCCATACTTTTTTTTAGGGACCGAGTCGCTCACATCTCGC CTCTCTCTGGCTGCTGGAAGCTCCATCGTGTCTCCTCTCCAATTGCCTCTCCTTTGCTGACCTTCTCTCTCTCTC CCCATCAATTTTTTTCCCTCTCCCCAGAGAGGCCGCCTCCGTGAATCTCGAAACGGTCCGTCTCCACCCTNNCCT CTGACCTCGCCTCGGCCGCGGAGCAGCTCTTCAAGAAATATGGCAACTTCCAAAAAGGCGAGGAGCCGTGGAAGA AATACGGCCGCCCCAACGACTGGAACATCGACCTGATCCCCAAGTTCCTCATGTCGTCGGGCGAGCTGACCAACA TCCTCGTCTCCACCGACGTCACCCGCTACCTCGAGTTCAAGCAGGTCGCCGGCAGCTTCGTCCAGCAGGGCTCCG GGCCCAAGGCCACCGTCGCCAAGGTGCCCTCGGACGCGGCCGAGGCCCTCAAGTCGCCCCTCATGGGCATCTTCG AGAAGCGCCGGATGAAGTCCTTCATCGAGTGGGTCGGCACCTTTGACCTCAAGGACCCGGCCACCCACAAGGGTC CGTCTCCCCTCCTCCTCCTCTTCTTCCTCTCCCTCCTCCCTCCTCCCCCGCACTGACCGAGGCTCGCCAGGCCTC GACCTCAACACGTGCACCATGCGCGACGTCTACGACAAGTTCGGCCTCGAGGCCTCCACCAAGGACTTCACCGGC CACGCCATGGCCCTCTACCTCACCGACGACTACATCAACGCCAAGGGCCAGGCCCCCGAGGCCATCGAGCGCATC CGCCTCTACGGCAACTCCGTCGCCCGCTACGGCAAGTCGCCCTACATCTACCCGCTCTACGGCCTCGGCGAGCTG CCCCAGGGCTTCGCCCGCCTGTCCGCCATCTACGGCGGCACCTACATGCTCAACACCAACGTCGACGAGCTGCTC TACGACGGCGAACGCGCCGTCGGCATCAAGGCCACCATGACCACCGGCGCCGACGACATGAAGTTCGAGACCAAG GCCAAGATGATCCTCGGCGACCCCTCCTACTTCCCCGCCAAGACCAGGGCCATCGGCCACGTCCTGCGCGCCATC TGCATCCTTAAGCACCCCCTGGCCGGCACCAACGACAGCGACTCGTGCCAGCTCATCATCCCCCAGTCGCAGGTC GGCCGCAAGAACGGTAAGCCCGCGCCCGCCACCCGGTCGGGCGTCGCCCGCCCCGCTGACGGCGCCACGCCACGC AGACATCTACATCGCCTGCGTCTCCTCGGCCCACAACGTCTGCCCCAAGGGCTACTGGATCGCCATCGTGTCGAC CATTGCCGAGTCGTCGGCCAACCACCACCTCGAGCTGCAGCCCGGCCTGGACCGCCTGGGCGCCATCGAGGAGCA GTTTATGGTGAGTGCCGTCGTCGTTTTTTTTGTTTCCCCGAAAAATGGGTACAGACTTGCTCATCCGTGCTGTGA CCCTAAAAGGGCCCGCCCATCCCCATGTACGAGCCGGTCGAGGACGGCACCAAGGACCACATCTTCATGTCCAAG AGCTACGACGCCACCAGCCACTTCGAGACGACGACGGACGACGTCAAGGACATCTACCGCCGCTGCACCGGCGAG GAGCTCAAGGTCGAGGGCCTGAGAGAGGGCATCACCGTCGCGGCGGAGCAATGA |