© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3628 |
| Gene name | |
| Location | Contig_1967:2455..3512 |
| Strand | - |
| Gene length (bp) | 1057 |
| Transcript length (bp) | 846 |
| Coding sequence length (bp) | 846 |
| Protein length (aa) | 282 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02201 | SWIB | SWIB/MDM2 domain | 1.3E-17 | 217 | 275 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7S3|SSR3_SCHPO | SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1 | 1 | 270 | 6.0E-24 |
| sp|Q96GM5|SMRD1_HUMAN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2 | 2 | 270 | 5.0E-21 |
| sp|Q2TBN1|SMRD1_BOVIN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1 | 2 | 270 | 6.0E-21 |
| sp|Q61466|SMRD1_MOUSE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3 | 2 | 270 | 8.0E-21 |
| sp|Q9VYG2|BAP60_DROME | Brahma-associated protein of 60 kDa OS=Drosophila melanogaster GN=Bap60 PE=1 SV=1 | 2 | 270 | 6.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7S3|SSR3_SCHPO | SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1 | 1 | 270 | 6.0E-24 |
| sp|Q96GM5|SMRD1_HUMAN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2 | 2 | 270 | 5.0E-21 |
| sp|Q2TBN1|SMRD1_BOVIN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1 | 2 | 270 | 6.0E-21 |
| sp|Q61466|SMRD1_MOUSE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3 | 2 | 270 | 8.0E-21 |
| sp|Q9VYG2|BAP60_DROME | Brahma-associated protein of 60 kDa OS=Drosophila melanogaster GN=Bap60 PE=1 SV=1 | 2 | 270 | 6.0E-20 |
| sp|Q99JR8|SMRD2_MOUSE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=1 SV=2 | 2 | 274 | 4.0E-19 |
| sp|O54772|SMRD2_RAT | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=1 SV=3 | 2 | 274 | 6.0E-19 |
| sp|Q92925|SMRD2_HUMAN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3 | 2 | 274 | 1.0E-18 |
| sp|E1BJD1|SMRD2_BOVIN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1 | 2 | 274 | 8.0E-18 |
| sp|Q6P9Z1|SMRD3_MOUSE | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2 | 2 | 270 | 4.0E-17 |
| sp|Q6STE5|SMRD3_HUMAN | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1 | 2 | 270 | 4.0E-17 |
| sp|Q556Z0|SNF12_DICDI | SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum GN=snf12-1 PE=3 SV=1 | 9 | 272 | 2.0E-16 |
| sp|P53628|SNF12_YEAST | Transcription regulatory protein SNF12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF12 PE=1 SV=1 | 26 | 257 | 2.0E-11 |
| sp|Q9FMT4|SNF12_ARATH | SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1 | 22 | 272 | 4.0E-11 |
| sp|P25632|RSC6_YEAST | Chromatin structure-remodeling complex protein RSC6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC6 PE=1 SV=1 | 17 | 252 | 3.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal|Nuclear export signal | 0.5814 | 0.8553 | 0.1306 | 0.0396 | 0.1373 | 0.0104 | 0.0313 | 0.097 | 0.1995 | 0.0569 |
| Orthofinder run ID | 4 |
| Orthogroup | 5156 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3628 MDKNMPDGVEECIVNPDGVQRYRDLREVERWLDATTTRKRLDASENFSRGHTKLLKTLRIWISNTVEDQVWQSNG LNVDAFDFTPNMEASYRVRIEGRLLDEREHEFSKPETSGVLGVSSTPQQDESSTAVSVECGLKDHKHRFSYFFRA LSVDFDRSRFRNGAEQNIEWKKPETTVKGHAPGSLPAIVDFDELTFKRNGDENTNITINLYRHEMPERYQLSPEL AEVVDMKDATQQEAVMGLWEYIRFWGLQEDEEKRNFRCDELLKQVVGRGDSGRGVS* |
| Coding | >Hirsu2|3628 ATGGACAAGAACATGCCCGATGGCGTCGAGGAGTGTATCGTCAATCCAGACGGTGTCCAGCGCTACAGAGACTTA AGGGAGGTTGAAAGGTGGCTGGACGCCACAACCACTCGGAAACGTCTCGACGCATCTGAAAACTTCAGTCGTGGG CACACCAAGCTCTTAAAGACGCTTCGAATTTGGATAAGCAACACCGTGGAGGACCAAGTCTGGCAGAGCAATGGC TTGAACGTTGATGCGTTCGACTTTACCCCCAATATGGAGGCCTCATACCGCGTCCGGATCGAAGGACGTTTGCTA GACGAGAGAGAGCATGAGTTCAGCAAGCCAGAAACCTCAGGGGTACTGGGCGTCTCATCAACGCCACAGCAAGAC GAGTCATCGACGGCTGTGTCTGTAGAATGTGGATTGAAGGACCACAAACACCGATTCTCATACTTCTTCAGGGCA CTGTCCGTCGACTTTGATCGATCACGGTTCCGTAACGGAGCGGAGCAAAACATCGAATGGAAGAAACCCGAGACA ACCGTGAAAGGCCACGCGCCAGGTAGCCTGCCTGCCATCGTCGATTTCGATGAACTTACCTTCAAGCGTAATGGA GACGAGAACACCAATATAACCATAAACCTTTACCGACATGAAATGCCCGAGCGATATCAGCTGAGCCCCGAACTG GCGGAGGTCGTGGATATGAAGGATGCGACGCAGCAAGAGGCCGTCATGGGTCTCTGGGAGTACATCAGATTCTGG GGTCTGCAAGAAGATGAGGAGAAGCGAAATTTCCGATGTGACGAGCTTTTGAAACAGGTCGTTGGAAGAGGCGAT AGTGGACGAGGAGTTTCATAA |
| Transcript | >Hirsu2|3628 ATGGACAAGAACATGCCCGATGGCGTCGAGGAGTGTATCGTCAATCCAGACGGTGTCCAGCGCTACAGAGACTTA AGGGAGGTTGAAAGGTGGCTGGACGCCACAACCACTCGGAAACGTCTCGACGCATCTGAAAACTTCAGTCGTGGG CACACCAAGCTCTTAAAGACGCTTCGAATTTGGATAAGCAACACCGTGGAGGACCAAGTCTGGCAGAGCAATGGC TTGAACGTTGATGCGTTCGACTTTACCCCCAATATGGAGGCCTCATACCGCGTCCGGATCGAAGGACGTTTGCTA GACGAGAGAGAGCATGAGTTCAGCAAGCCAGAAACCTCAGGGGTACTGGGCGTCTCATCAACGCCACAGCAAGAC GAGTCATCGACGGCTGTGTCTGTAGAATGTGGATTGAAGGACCACAAACACCGATTCTCATACTTCTTCAGGGCA CTGTCCGTCGACTTTGATCGATCACGGTTCCGTAACGGAGCGGAGCAAAACATCGAATGGAAGAAACCCGAGACA ACCGTGAAAGGCCACGCGCCAGGTAGCCTGCCTGCCATCGTCGATTTCGATGAACTTACCTTCAAGCGTAATGGA GACGAGAACACCAATATAACCATAAACCTTTACCGACATGAAATGCCCGAGCGATATCAGCTGAGCCCCGAACTG GCGGAGGTCGTGGATATGAAGGATGCGACGCAGCAAGAGGCCGTCATGGGTCTCTGGGAGTACATCAGATTCTGG GGTCTGCAAGAAGATGAGGAGAAGCGAAATTTCCGATGTGACGAGCTTTTGAAACAGGTCGTTGGAAGAGGCGAT AGTGGACGAGGAGTTTCATAA |
| Gene | >Hirsu2|3628 ATGGACAAGAACATGCCCGATGGCGTCGAGGAGTGTATCGTCAATCCAGACGGTGTCCAGCGCTACAGAGACTTA AGGGAGGTTGAAAGGTGGCTGGACGCCACAACCACTCGGAAACGTCTCGACGCATCTGAAAACTTCAGTCGTGGG CACACCAAGGTTATTTGCCCATTCCCCTATCGGGTCGGTCCAGGCGATGGTTTTGGTAGCTAACCGTAATACCCT AGCTCTTAAAGACGCTTCGAATTTGGATAAGCAACACCGTGGAGGACCAAGTCTGGCAGAGCAATGGCTTGAACG TTGATGCGTTCGACTTTACCCCCAATATGGAGGCCTCATACCGCGTCCGGATCGAAGGACGTTTGCTAGACGAGA GAGAGCATGAGTTCAGCAAGCCAGAAACCTCAGGGGTACTGGGCGTCTCATCAACGCCACAGCAAGACGAGTCAT CGACGGCTGTGTCTGTAGAATGTGGATTGAAGGACCACAAACACCGATTCTCATACTTCTTCAGGGCACTGTCCG TCGACTTTGATCGATCACGGTTCCGTAACGGAGCGGAGCAAAACATCGAATGGAAGAAACCCGAGACAACCGTGA AAGGCCACGCGCCAGGTAGCCTGCCTGCCATCGTCGATTTCGATGAACTTACCTTCAAGCGTAATGGAGACGAGA ACACCAATATAACCATAAACCTTTACCGACATGAAATGCCCGAGCGATATCAGCTGAGCCCCGAACTGGCGGAGG TCGTGGATATGAAGGATGCGACGCAGCAAGAGGCCGTCATGGGTCTCTGGGAGTACATCAGATTCTGGGGTCTGC AAGAAGATGAGGAGAAGCGAAATTTCCGATGTGACGAGCTTTTGAAACAGGTGAGTTTGGTCAATGTTTCCGCGG TTCTTCACCCGCTCGAAGCTGACCTGACGGCGCAGGTCGTTGGAAGAGGCGATGTGGGATATATTCCCATGCTCA ATGAGTATGTCACCTCACATTTGCGTCCATTACCACCGATCAGCCTCCCGTATACCATCAGAGTGGACGAGGAGT TTCATAA |