© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3623 |
| Gene name | |
| Location | Contig_1965:1244..3412 |
| Strand | - |
| Gene length (bp) | 2168 |
| Transcript length (bp) | 1461 |
| Coding sequence length (bp) | 1461 |
| Protein length (aa) | 487 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.7725 | 0.374 | 0.1693 | 0.1824 | 0.1092 | 0.0099 | 0.1962 | 0.1291 | 0.1614 | 0.0722 |
| Orthofinder run ID | 4 |
| Orthogroup | 2500 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3623 MDPTTTLVTFLLQTDPSVQSVQLIGSWDNFSSCYAMKPDVRRGRGEWRGCYSFKDIVCDDSATATGSRRNGGLKM GATYYYYYEVDGSTETHDPAVPCTTACPYLPGQTVNTLIVPVERSLRQRSASLNSLHVESFKTMDPEAKFTTPRP TPALAVEAAARRVATAASFPHTRSPVRSSPPTPSWKRFFTRKPPLRDADDALDPEPAAEHAPHFPTAEDHASPSE STARPRDISPESLRQFLSEDAPAGPGPYSGPPSPALVIPENIPEEAEDDDNFATSATSEPQAYATSLSPPPFQRS ASSDSVARPLANDSSHTLTRAPRPSTRQRQSDEGRVPRPSHGPELHKLETGAHIRWSISATSSALTSPVSQSIED EPPSFYDSNDEDDVLSSNDGDNFSHWPLQSQSPKEQAFTGYSLPRQSDEVKGADDSGAAVTGLHSPRLLARSDCA APLGGANLLGTTIDTGLDDFVSELGWIVDVIGSKTA* |
| Coding | >Hirsu2|3623 ATGGATCCCACCACGACCCTCGTCACCTTCCTGCTTCAGACGGACCCCTCGGTTCAGTCGGTCCAGCTGATTGGC TCCTGGGACAACTTTTCCTCTTGCTACGCCATGAAGCCTGACGTGCGACGCGGCCGCGGCGAGTGGAGAGGATGT TATTCCTTCAAAGACATTGTTTGCGACGACAGCGCCACGGCCACCGGCTCCCGCAGGAATGGCGGCCTCAAGATG GGTGCCACTTATTATTACTATTACGAGGTTGACGGCTCCACCGAGACGCACGACCCTGCCGTGCCCTGCACGACT GCCTGTCCCTACCTGCCGGGCCAGACGGTCAATACACTGATTGTTCCTGTTGAGCGCTCCCTTCGCCAGCGCAGC GCCTCCCTCAACTCCCTACACGTCGAGAGCTTCAAGACCATGGACCCCGAAGCCAAGTTCACCACGCCCCGGCCC ACCCCTGCTCTCGCCGTCGAGGCCGCCGCCCGTCGTGTTGCCACCGCCGCCTCCTTTCCTCACACCCGCTCGCCC GTTCGCTCGTCCCCGCCGACTCCCTCGTGGAAGCGCTTCTTCACCCGCAAACCCCCTCTTCGCGATGCCGACGAC GCGCTGGACCCCGAGCCCGCCGCGGAGCACGCACCGCATTTCCCGACCGCAGAGGACCACGCGAGCCCCTCGGAG AGCACGGCCCGCCCGAGGGACATTTCTCCCGAGTCACTACGCCAGTTCCTCTCCGAGGACGCCCCGGCAGGCCCC GGTCCTTACAGTGGCCCTCCGTCGCCGGCCCTGGTCATACCGGAGAACATCCCCGAGGAAGCGGAAGACGACGAT AACTTCGCCACTTCGGCGACCTCAGAACCTCAGGCCTACGCCACCTCGCTGTCGCCGCCTCCTTTCCAGCGGTCC GCATCGTCGGACTCGGTGGCCCGGCCTCTCGCAAATGACAGCTCTCACACGCTCACCCGCGCGCCGCGGCCATCA ACGAGACAGCGGCAGTCTGACGAGGGCCGGGTCCCAAGGCCGTCGCACGGTCCCGAGCTGCACAAGCTGGAGACT GGCGCCCACATTCGCTGGTCGATTTCGGCCACTTCGAGCGCCTTGACCAGCCCCGTCTCTCAGTCGATAGAGGAC GAGCCCCCGTCCTTCTACGACTCCAACGATGAGGACGACGTGCTGTCGAGCAACGATGGCGACAACTTCTCTCAC TGGCCGCTGCAGAGCCAGTCGCCCAAGGAGCAGGCCTTCACGGGCTACAGCCTACCGCGCCAAAGCGATGAGGTC AAGGGCGCCGACGACTCCGGAGCCGCCGTCACTGGTCTTCATTCCCCGCGGCTCCTTGCCCGAAGCGACTGCGCG GCGCCCCTCGGCGGCGCTAACCTGCTGGGCACGACCATCGACACGGGTCTCGATGATTTCGTCAGTGAGCTAGGC TGGATAGTCGACGTCATTGGCAGCAAAACAGCCTAG |
| Transcript | >Hirsu2|3623 ATGGATCCCACCACGACCCTCGTCACCTTCCTGCTTCAGACGGACCCCTCGGTTCAGTCGGTCCAGCTGATTGGC TCCTGGGACAACTTTTCCTCTTGCTACGCCATGAAGCCTGACGTGCGACGCGGCCGCGGCGAGTGGAGAGGATGT TATTCCTTCAAAGACATTGTTTGCGACGACAGCGCCACGGCCACCGGCTCCCGCAGGAATGGCGGCCTCAAGATG GGTGCCACTTATTATTACTATTACGAGGTTGACGGCTCCACCGAGACGCACGACCCTGCCGTGCCCTGCACGACT GCCTGTCCCTACCTGCCGGGCCAGACGGTCAATACACTGATTGTTCCTGTTGAGCGCTCCCTTCGCCAGCGCAGC GCCTCCCTCAACTCCCTACACGTCGAGAGCTTCAAGACCATGGACCCCGAAGCCAAGTTCACCACGCCCCGGCCC ACCCCTGCTCTCGCCGTCGAGGCCGCCGCCCGTCGTGTTGCCACCGCCGCCTCCTTTCCTCACACCCGCTCGCCC GTTCGCTCGTCCCCGCCGACTCCCTCGTGGAAGCGCTTCTTCACCCGCAAACCCCCTCTTCGCGATGCCGACGAC GCGCTGGACCCCGAGCCCGCCGCGGAGCACGCACCGCATTTCCCGACCGCAGAGGACCACGCGAGCCCCTCGGAG AGCACGGCCCGCCCGAGGGACATTTCTCCCGAGTCACTACGCCAGTTCCTCTCCGAGGACGCCCCGGCAGGCCCC GGTCCTTACAGTGGCCCTCCGTCGCCGGCCCTGGTCATACCGGAGAACATCCCCGAGGAAGCGGAAGACGACGAT AACTTCGCCACTTCGGCGACCTCAGAACCTCAGGCCTACGCCACCTCGCTGTCGCCGCCTCCTTTCCAGCGGTCC GCATCGTCGGACTCGGTGGCCCGGCCTCTCGCAAATGACAGCTCTCACACGCTCACCCGCGCGCCGCGGCCATCA ACGAGACAGCGGCAGTCTGACGAGGGCCGGGTCCCAAGGCCGTCGCACGGTCCCGAGCTGCACAAGCTGGAGACT GGCGCCCACATTCGCTGGTCGATTTCGGCCACTTCGAGCGCCTTGACCAGCCCCGTCTCTCAGTCGATAGAGGAC GAGCCCCCGTCCTTCTACGACTCCAACGATGAGGACGACGTGCTGTCGAGCAACGATGGCGACAACTTCTCTCAC TGGCCGCTGCAGAGCCAGTCGCCCAAGGAGCAGGCCTTCACGGGCTACAGCCTACCGCGCCAAAGCGATGAGGTC AAGGGCGCCGACGACTCCGGAGCCGCCGTCACTGGTCTTCATTCCCCGCGGCTCCTTGCCCGAAGCGACTGCGCG GCGCCCCTCGGCGGCGCTAACCTGCTGGGCACGACCATCGACACGGGTCTCGATGATTTCGTCAGTGAGCTAGGC TGGATAGTCGACGTCATTGGCAGCAAAACAGCCTAG |
| Gene | >Hirsu2|3623 ATGGATCCCACCACGACCCTCGTCACCTTCCTGCTGTGAGTTTCGTCTTTGCTTCGCCTCGCTCTCTCCCCCTTG AGCCAGGATGCTTCTTTTTATACCACCCATTGCTCTGTTTTTGCCCTATCCTTGCCCGCCCTCGTGCGCCCAAAA GCAAAACGGCACGGGAATAGAAACCAGTCCGACTTTCAAAAAGGAAAAGGTCTCACCCTCCTCATCCCTTCCCTT GTTGGCTCTCAATATCCTCCTCCTCTCGCTTCACTCCGTGCCAGTGTCCCTTCCCTTTCGTACTCTCCACGCCTA CGCGCTGCCACGCGATTCCCCTTACCCCGAGTCTGGTCCGCTTGTCTGTCTCAAGGCACAGTCATCTCGTCCTTC TAGACTCCTAGCCTTTCCCCTTCTGCCTCGGCCCCTGGACTGTCTTACGGCTGAGGCACGCGGATCGACGCATTC GCTCGGCATGCCCTACGCCACACTCTCTGCTCTCATTACACATCGCGGCAGGGTCCGCGGCCTCCCGAGACCCCT GCCCCCTGCCCTCTTCTCTCCTGCCTGCCGTACTGGGCACAAGGCTGAGGCGCGACAAATTTCATGTTGATGCTC GCAGTCGCTTAGAAGCCTCTCGCGGTCGGACACGAGCTGACGCCCATGCTTCTTCTAGTCAGACGGACCCCTCGG TTCAGTCGGTCCAGCTGATTGGCTCCTGGGACAACTTTTCCTCTTGCTACGCCATGAAGCCTGACGTGCGACGCG GCCGCGGCGAGTGGAGAGGATGTTATTCCTTCAAAGACATTGTTTGCGACGACAGCGCCACGGCCACCGGCTCCC GCAGGAATGGCGGCCTCAAGATGGGTGCCACTTATTATTACTATGTAAGAACCCGCCTCGCCCTCCCTCTGCATC GCCGCCTTTGATCCACTGACTTGTCCTCTCTCCTCCCCTTCTTCTCTCTCCAGTACGAGGTTGACGGCTCCACCG AGACGCACGACCCTGCCGTGCCCTGCACGACTGCCTGTCCCTACCTGCCGGGCCAGACGGTCAATACACTGATTG TTCCTGTTGAGCGCTCCCTTCGCCAGCGCAGCGCCTCCCTCAACTCCCTACACGTCGAGAGCTTCAAGACCATGG ACCCCGAAGCCAAGTTCACCACGCCCCGGCCCACCCCTGCTCTCGCCGTCGAGGCCGCCGCCCGTCGTGTTGCCA CCGCCGCCTCCTTTCCTCACACCCGCTCGCCCGTTCGCTCGTCCCCGCCGACTCCCTCGTGGAAGCGCTTCTTCA CCCGCAAACCCCCTCTTCGCGATGCCGACGACGCGCTGGACCCCGAGCCCGCCGCGGAGCACGCACCGCATTTCC CGACCGCAGAGGACCACGCGAGCCCCTCGGAGAGCACGGCCCGCCCGAGGGACATTTCTCCCGAGTCACTACGCC AGTTCCTCTCCGAGGACGCCCCGGCAGGCCCCGGTCCTTACAGTGGCCCTCCGTCGCCGGCCCTGGTCATACCGG AGAACATCCCCGAGGAAGCGGAAGACGACGATAACTTCGCCACTTCGGCGACCTCAGAACCTCAGGCCTACGCCA CCTCGCTGTCGCCGCCTCCTTTCCAGCGGTCCGCATCGTCGGACTCGGTGGCCCGGCCTCTCGCAAATGACAGCT CTCACACGCTCACCCGCGCGCCGCGGCCATCAACGAGACAGCGGCAGTCTGACGAGGGCCGGGTCCCAAGGCCGT CGCACGGTCCCGAGCTGCACAAGCTGGAGACTGGCGCCCACATTCGCTGGTCGATTTCGGCCACTTCGAGCGCCT TGACCAGCCCCGTCTCTCAGTCGATAGAGGACGAGCCCCCGTCCTTCTACGACTCCAACGATGAGGACGACGTGC TGTCGAGCAACGATGGCGACAACTTCTCTCACTGGCCGCTGCAGAGCCAGTCGCCCAAGGAGCAGGCCTTCACGG GCTACAGCCTACCGCGCCAAAGCGATGAGGTCAAGGGCGCCGACGACTCCGGAGCCGCCGTCACTGGTCTTCATT CCCCGCGGCTCCTTGCCCGAAGCGACTGCGCGGCGCCCCTCGGCGGCGCTAACCTGCTGGGCACGACCATCGACA CGGGTCTCGATGATTTCGTCAGTGAGCTAGGCTGGATAGTCGACGTCATTGGCAGCAAAACAGCCTAG |