© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3618 |
| Gene name | |
| Location | Contig_1963:1349..1829 |
| Strand | + |
| Gene length (bp) | 480 |
| Transcript length (bp) | 417 |
| Coding sequence length (bp) | 417 |
| Protein length (aa) | 139 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | 0.5368 | 0.5436 | 0.2931 | 0.0921 | 0.1739 | 0.2437 | 0.0988 | 0.236 | 0.0488 | 0.0304 |
| Orthofinder run ID | 4 |
| Orthogroup | 9383 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3618 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3618 MRARGSRLRSLLVPRSRGRLLADAQGVRPGPLSGSLTDNNNSHDTDRDQQAVVSGVAGVPFLPHSQRRPARVFSP PAPLHIAASSGIGIITSTDHHRHRHRPPRFIPRLATSPPSCASLPRPAASSPAVLCAVVGRGP* |
| Coding | >Hirsu2|3618 ATGCGTGCAAGAGGCTCTCGGCTGCGGTCTCTGCTCGTCCCGCGGTCACGTGGCCGGCTGCTTGCAGACGCCCAG GGCGTGCGGCCCGGGCCTCTCTCTGGCTCCCTGACCGACAACAACAACAGCCACGACACCGACAGGGACCAGCAG GCTGTCGTCTCTGGAGTCGCGGGCGTTCCCTTTCTGCCGCACAGCCAGAGACGCCCTGCCCGCGTCTTCTCGCCG CCCGCTCCTCTCCACATCGCAGCAAGCAGCGGCATCGGCATCATCACCAGCACCGATCACCATCGCCACCGTCAT CGCCCTCCTCGCTTCATCCCTCGTCTCGCGACGTCACCGCCCTCGTGCGCTTCTCTTCCCCGCCCTGCAGCGTCG TCTCCAGCGGTGCTGTGCGCTGTGGTGGGCCGGGGGCCGTGA |
| Transcript | >Hirsu2|3618 ATGCGTGCAAGAGGCTCTCGGCTGCGGTCTCTGCTCGTCCCGCGGTCACGTGGCCGGCTGCTTGCAGACGCCCAG GGCGTGCGGCCCGGGCCTCTCTCTGGCTCCCTGACCGACAACAACAACAGCCACGACACCGACAGGGACCAGCAG GCTGTCGTCTCTGGAGTCGCGGGCGTTCCCTTTCTGCCGCACAGCCAGAGACGCCCTGCCCGCGTCTTCTCGCCG CCCGCTCCTCTCCACATCGCAGCAAGCAGCGGCATCGGCATCATCACCAGCACCGATCACCATCGCCACCGTCAT CGCCCTCCTCGCTTCATCCCTCGTCTCGCGACGTCACCGCCCTCGTGCGCTTCTCTTCCCCGCCCTGCAGCGTCG TCTCCAGCGGTGCTGTGCGCTGTGGTGGGCCGGGGGCCGTGA |
| Gene | >Hirsu2|3618 ATGCGTGCAAGAGGCTCTCGGCTGCGGTCTCTGCTCGTCCCGCGGTCACGTGGCCGGCTGCTTGCAGACGCCCAG GGCGTGCGGCCCGGGCCTCTCTCTGGCTCCCTGACCGACAACAACAACAGCCACGACACCGACAGGGACCAGCAG GCTGTCGTCTCTGGAGTCGCGGGCGTTCCCTTTCTGCCGCACAGCCAGAGACGCCCTGCCCGCGTCTTCTCGCCG CCCGCTCCTCTCCACATCGCAGGTTAGCGATGCTCCTGCGGCGCCGGATGCCCCGAAGAAGATCCGACGTTTGAT GATTGCTCAGCAAGCAGCGGCATCGGCATCATCACCAGCACCGATCACCATCGCCACCGTCATCGCCCTCCTCGC TTCATCCCTCGTCTCGCGACGTCACCGCCCTCGTGCGCTTCTCTTCCCCGCCCTGCAGCGTCGTCTCCAGCGGTG CTGTGCGCTGTGGTGGGCCGGGGGCCGTGA |