© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3617 |
| Gene name | |
| Location | Contig_1963:134..1189 |
| Strand | - |
| Gene length (bp) | 1055 |
| Transcript length (bp) | 816 |
| Coding sequence length (bp) | 816 |
| Protein length (aa) | 272 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 7.1E-52 | 77 | 255 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9FVW4|RENT3_ARATH | Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1 | 77 | 255 | 9.0E-14 |
| sp|Q9H1J1|REN3A_HUMAN | Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1 | 80 | 259 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3617 MSAPAPQVLSRRANGAPHAPAGQPTDPPAAKGKSTLDAYAQRPSRARGSGDRGADGNARSANAGEAPKRSKPRPH NEGEKLVVRRLPPGMTEAEFVSALGPEWEVNKGKVDWFSYCIGKVASDPSKLSRPSRAYLHLTRKDDMMALSQAV RAATWEDASGTFTSSSLIGPPSLEFSTYKKVPGSRRRTDPRQGTIDQDQEFMAFLEGLANPAPPRESVEVEDADE TAKEDGNNNSGSGAKVTTTPLVEFLKEKKANKGKDGAAGKNAKSGN* |
| Coding | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA |
| Transcript | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA |
| Gene | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGTGAGCGCCCCGAGCCGGCGTCGCCTCCACCCTGCCGCTTCTGACGACGCCTCCAAG GGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGCGACCGAGGCGCCGACGGC AACGCCAGGGTACGTCCCCGGCATCCGCCTTGGCCCCAGCCCTGCCCCGACCTCCTGACACTTGTCTCCAGAGCG CCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCACAACGAGGGCGAGAAACTCGTCGTCCGCCGCC TGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGGCCGGAGTGGGAGGTGAACAAGGGCAAGGTCG ACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGAGTGAGTCAGGGCCGCGTGGTGCGAGAGGTGCGGCTGCG CTGACCGTCTGCACCCTCCAGCCCCTCGAAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGA CGACATGATGGCCCTCAGCCAGGCCGTGCGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTC GCTCATCGGCCCGCCCAGCCTCGAGTTCTCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCG ACAGGGGACCATCGACCAGGACCAGGAGTTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGA GAGCGTCGAGGTCGAAGACGCCGACGAGACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGT CACCACCACCCCGCTCGTCGAGTTTCTCAAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAA CGCAAAGTCTGGGTCAGCAAAGGGCAAGGGAGGCGCCAAGGAGGAGGAGACGGCCAAGAAGAGGGGGGCCAAGGA ATTGA |