Protein ID | Hirsu2|3617 |
Gene name | |
Location | Contig_1963:134..1189 |
Strand | - |
Gene length (bp) | 1055 |
Transcript length (bp) | 816 |
Coding sequence length (bp) | 816 |
Protein length (aa) | 272 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03467 | Smg4_UPF3 | Smg-4/UPF3 family | 7.1E-52 | 77 | 255 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9FVW4|RENT3_ARATH | Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1 | 77 | 255 | 9.0E-14 |
sp|Q9H1J1|REN3A_HUMAN | Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1 | 80 | 259 | 7.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.6578 | 0.5653 | 0.2884 | 0.0244 | 0.0676 | 0.0105 | 0.0915 | 0.0076 | 0.0243 | 0.003 |
Orthofinder run ID | 4 |
Orthogroup | 2499 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3617 MSAPAPQVLSRRANGAPHAPAGQPTDPPAAKGKSTLDAYAQRPSRARGSGDRGADGNARSANAGEAPKRSKPRPH NEGEKLVVRRLPPGMTEAEFVSALGPEWEVNKGKVDWFSYCIGKVASDPSKLSRPSRAYLHLTRKDDMMALSQAV RAATWEDASGTFTSSSLIGPPSLEFSTYKKVPGSRRRTDPRQGTIDQDQEFMAFLEGLANPAPPRESVEVEDADE TAKEDGNNNSGSGAKVTTTPLVEFLKEKKANKGKDGAAGKNAKSGN* |
Coding | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA |
Transcript | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA |
Gene | >Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGTGAGCGCCCCGAGCCGGCGTCGCCTCCACCCTGCCGCTTCTGACGACGCCTCCAAG GGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGCGACCGAGGCGCCGACGGC AACGCCAGGGTACGTCCCCGGCATCCGCCTTGGCCCCAGCCCTGCCCCGACCTCCTGACACTTGTCTCCAGAGCG CCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCACAACGAGGGCGAGAAACTCGTCGTCCGCCGCC TGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGGCCGGAGTGGGAGGTGAACAAGGGCAAGGTCG ACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGAGTGAGTCAGGGCCGCGTGGTGCGAGAGGTGCGGCTGCG CTGACCGTCTGCACCCTCCAGCCCCTCGAAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGA CGACATGATGGCCCTCAGCCAGGCCGTGCGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTC GCTCATCGGCCCGCCCAGCCTCGAGTTCTCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCG ACAGGGGACCATCGACCAGGACCAGGAGTTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGA GAGCGTCGAGGTCGAAGACGCCGACGAGACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGT CACCACCACCCCGCTCGTCGAGTTTCTCAAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAA CGCAAAGTCTGGGTCAGCAAAGGGCAAGGGAGGCGCCAAGGAGGAGGAGACGGCCAAGAAGAGGGGGGCCAAGGA ATTGA |