Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3617
Gene name
LocationContig_1963:134..1189
Strand-
Gene length (bp)1055
Transcript length (bp)816
Coding sequence length (bp)816
Protein length (aa) 272

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03467 Smg4_UPF3 Smg-4/UPF3 family 7.1E-52 77 255

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9FVW4|RENT3_ARATH Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1 77 255 9.0E-14
sp|Q9H1J1|REN3A_HUMAN Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1 80 259 7.0E-06

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6578 0.5653 0.2884 0.0244 0.0676 0.0105 0.0915 0.0076 0.0243 0.003

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2499
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7857
Ophiocordyceps australis map64 (Brazil) OphauB2|7473
Ophiocordyceps camponoti-floridani Ophcf2|00501
Ophiocordyceps camponoti-rufipedis Ophun1|4568
Ophiocordyceps kimflemingae Ophio5|4183
Ophiocordyceps subramaniannii Hirsu2|3617 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3617
MSAPAPQVLSRRANGAPHAPAGQPTDPPAAKGKSTLDAYAQRPSRARGSGDRGADGNARSANAGEAPKRSKPRPH
NEGEKLVVRRLPPGMTEAEFVSALGPEWEVNKGKVDWFSYCIGKVASDPSKLSRPSRAYLHLTRKDDMMALSQAV
RAATWEDASGTFTSSSLIGPPSLEFSTYKKVPGSRRRTDPRQGTIDQDQEFMAFLEGLANPAPPRESVEVEDADE
TAKEDGNNNSGSGAKVTTTPLVEFLKEKKANKGKDGAAGKNAKSGN*
Coding >Hirsu2|3617
ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC
GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC
GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC
AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG
CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG
AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG
CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC
TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG
TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG
ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC
AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA
Transcript >Hirsu2|3617
ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC
GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC
GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC
AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG
CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG
AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG
CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC
TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG
TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG
ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC
AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA
Gene >Hirsu2|3617
ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC
GATCCTCCTGCCGCCAAGGTGAGCGCCCCGAGCCGGCGTCGCCTCCACCCTGCCGCTTCTGACGACGCCTCCAAG
GGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGCGACCGAGGCGCCGACGGC
AACGCCAGGGTACGTCCCCGGCATCCGCCTTGGCCCCAGCCCTGCCCCGACCTCCTGACACTTGTCTCCAGAGCG
CCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCACAACGAGGGCGAGAAACTCGTCGTCCGCCGCC
TGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGGCCGGAGTGGGAGGTGAACAAGGGCAAGGTCG
ACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGAGTGAGTCAGGGCCGCGTGGTGCGAGAGGTGCGGCTGCG
CTGACCGTCTGCACCCTCCAGCCCCTCGAAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGA
CGACATGATGGCCCTCAGCCAGGCCGTGCGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTC
GCTCATCGGCCCGCCCAGCCTCGAGTTCTCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCG
ACAGGGGACCATCGACCAGGACCAGGAGTTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGA
GAGCGTCGAGGTCGAAGACGCCGACGAGACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGT
CACCACCACCCCGCTCGTCGAGTTTCTCAAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAA
CGCAAAGTCTGGGTCAGCAAAGGGCAAGGGAGGCGCCAAGGAGGAGGAGACGGCCAAGAAGAGGGGGGCCAAGGA
ATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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