Fungal Genomics

General Properties

Protein ID	Hirsu2|3617
Gene name
Location	Contig_1963:134..1189
Strand	-
Gene length (bp)	1055
Transcript length (bp)	816
Coding sequence length (bp)	816
Protein length (aa)	272

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03467	Smg4_UPF3	Smg-4/UPF3 family	7.1E-52	77	255

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q9FVW4|RENT3_ARATH	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana GN=UPF3 PE=1 SV=1	77	255	9.0E-14
sp|Q9H1J1|REN3A_HUMAN	Regulator of nonsense transcripts 3A OS=Homo sapiens GN=UPF3A PE=1 SV=1	80	259	7.0E-06

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm|Nucleus	Nuclear localization signal	0.6578	0.5653	0.2884	0.0244	0.0676	0.0105	0.0915	0.0076	0.0243	0.003

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID	4
Orthogroup	2499
Change Orthofinder run	4: Insect Pathogens

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2|7857
Ophiocordyceps australis map64 (Brazil)	OphauB2|7473
Ophiocordyceps camponoti-floridani	Ophcf2|00501
Ophiocordyceps camponoti-rufipedis	Ophun1|4568
Ophiocordyceps kimflemingae	Ophio5|4183
Ophiocordyceps subramaniannii	Hirsu2|3617 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|3617 MSAPAPQVLSRRANGAPHAPAGQPTDPPAAKGKSTLDAYAQRPSRARGSGDRGADGNARSANAGEAPKRSKPRPH NEGEKLVVRRLPPGMTEAEFVSALGPEWEVNKGKVDWFSYCIGKVASDPSKLSRPSRAYLHLTRKDDMMALSQAV RAATWEDASGTFTSSSLIGPPSLEFSTYKKVPGSRRRTDPRQGTIDQDQEFMAFLEGLANPAPPRESVEVEDADE TAKEDGNNNSGSGAKVTTTPLVEFLKEKKANKGKDGAAGKNAKSGN*
Coding	>Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA
Transcript	>Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGC GACCGAGGCGCCGACGGCAACGCCAGGAGCGCCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCAC AACGAGGGCGAGAAACTCGTCGTCCGCCGCCTGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGG CCGGAGTGGGAGGTGAACAAGGGCAAGGTCGACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGACCCCTCG AAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGACGACATGATGGCCCTCAGCCAGGCCGTG CGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTCGCTCATCGGCCCGCCCAGCCTCGAGTTC TCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCGACAGGGGACCATCGACCAGGACCAGGAG TTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGAGAGCGTCGAGGTCGAAGACGCCGACGAG ACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGTCACCACCACCCCGCTCGTCGAGTTTCTC AAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAACGCAAAGTCTGGGAATTGA
Gene	>Hirsu2|3617 ATGTCTGCTCCGGCGCCGCAGGTCCTGTCCCGTAGGGCAAACGGAGCGCCTCACGCCCCCGCCGGCCAGCCGACC GATCCTCCTGCCGCCAAGGTGAGCGCCCCGAGCCGGCGTCGCCTCCACCCTGCCGCTTCTGACGACGCCTCCAAG GGCAAGTCGACCCTCGACGCCTACGCGCAGCGGCCGTCGCGAGCGAGGGGCTCCGGCGACCGAGGCGCCGACGGC AACGCCAGGGTACGTCCCCGGCATCCGCCTTGGCCCCAGCCCTGCCCCGACCTCCTGACACTTGTCTCCAGAGCG CCAACGCGGGCGAGGCCCCCAAACGATCCAAGCCGCGGCCTCACAACGAGGGCGAGAAACTCGTCGTCCGCCGCC TGCCGCCCGGCATGACCGAGGCCGAGTTCGTCTCGGCCCTGGGGCCGGAGTGGGAGGTGAACAAGGGCAAGGTCG ACTGGTTCTCCTACTGCATCGGAAAAGTGGCCTCGGAGTGAGTCAGGGCCGCGTGGTGCGAGAGGTGCGGCTGCG CTGACCGTCTGCACCCTCCAGCCCCTCGAAGCTGTCGCGCCCCAGCCGGGCCTACCTTCACCTGACGCGAAAGGA CGACATGATGGCCCTCAGCCAGGCCGTGCGCGCCGCCACCTGGGAGGATGCTAGCGGGACCTTTACGAGCTCCTC GCTCATCGGCCCGCCCAGCCTCGAGTTCTCGACCTACAAGAAAGTCCCCGGCAGCAGGCGACGGACCGACCCGCG ACAGGGGACCATCGACCAGGACCAGGAGTTCATGGCCTTCCTCGAGGGCCTCGCGAACCCAGCCCCTCCGAGGGA GAGCGTCGAGGTCGAAGACGCCGACGAGACAGCCAAGGAAGACGGCAACAACAACAGCGGCAGCGGCGCCAAGGT CACCACCACCCCGCTCGTCGAGTTTCTCAAGGAGAAGAAGGCCAACAAGGGCAAGGACGGCGCGGCCGGCAAGAA CGCAAAGTCTGGGTCAGCAAAGGGCAAGGGAGGCGCCAAGGAGGAGGAGACGGCCAAGAAGAGGGGGGCCAAGGA ATTGA