Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3615
Gene name
LocationContig_1962:18..422
Strand+
Gene length (bp)404
Transcript length (bp)282
Coding sequence length (bp)282
Protein length (aa) 94

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04099 Sybindin Sybindin-like family 9.1E-16 11 90

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2 1 92 6.0E-26
sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1 10 92 9.0E-22
sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1 10 92 9.0E-22
sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1 10 92 1.0E-20
sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 10 92 1.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2 1 92 6.0E-26
sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1 10 92 9.0E-22
sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1 10 92 9.0E-22
sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1 10 92 1.0E-20
sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 10 92 1.0E-20
sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1 8 92 4.0E-12
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GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0030008 TRAPP complex Yes
GO:0006810 transport No
GO:0140535 intracellular protein-containing complex No
GO:0032991 protein-containing complex No
GO:0099023 vesicle tethering complex No
GO:0005575 cellular_component No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0051179 localization No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Signal peptide 0.2742 0.2533 0.0908 0.3049 0.1006 0.0017 0.2352 0.6105 0.3389 0.0089

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2497
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|7955
Ophiocordyceps australis map64 (Brazil) OphauB2|6172
Ophiocordyceps camponoti-floridani Ophcf2|04994
Ophiocordyceps camponoti-rufipedis Ophun1|4855
Ophiocordyceps kimflemingae Ophio5|118
Ophiocordyceps subramaniannii Hirsu2|3615 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3615
MVRKLGGDDDAFISYRTAQYKLHFYETPANLRLVLLTDTASASMRNVLHQIYINLWVEYVVKNPLAPVEHKGGDG
VKNELFELGLDQFIRGLM*
Coding >Hirsu2|3615
ATGGTGCGCAAGCTGGGCGGCGACGACGACGCCTTCATCAGCTACCGCACCGCCCAGTACAAGCTGCACTTCTAC
GAGACGCCCGCCAACCTGCGCCTCGTCCTGCTGACCGACACCGCCTCGGCCAGCATGCGCAATGTCCTGCACCAG
ATATACATCAACCTCTGGGTTGAATACGTCGTCAAAAACCCCCTGGCGCCCGTCGAGCACAAGGGCGGCGACGGT
GTCAAGAACGAGCTTTTCGAGCTCGGCCTCGACCAGTTCATCAGGGGCCTTATGTGA
Transcript >Hirsu2|3615
ATGGTGCGCAAGCTGGGCGGCGACGACGACGCCTTCATCAGCTACCGCACCGCCCAGTACAAGCTGCACTTCTAC
GAGACGCCCGCCAACCTGCGCCTCGTCCTGCTGACCGACACCGCCTCGGCCAGCATGCGCAATGTCCTGCACCAG
ATATACATCAACCTCTGGGTTGAATACGTCGTCAAAAACCCCCTGGCGCCCGTCGAGCACAAGGGCGGCGACGGT
GTCAAGAACGAGCTTTTCGAGCTCGGCCTCGACCAGTTCATCAGGGGCCTTATGTGA
Gene >Hirsu2|3615
ATGGTGCGCAAGCTGGGCGGCGACGACGACGCCTTCATCAGCTACCGCACCGCCCAGTACAAGCTGCACTTCTAC
GAGACGCCCGCCAACCTGCGCCTCGTCCTGCTGACCGACACCGCCTCGGCCAGCATGCGCAATGTCCTGCACCAG
ATATACATCAACCTCTGGGTTGAATACGGTCCGTGTTTCTTTTTTCCTCTTACCTTCCCCAATGTCGAGGACAAG
AATCTTGGCAGGCCGAGTAGTATTTCTGTCCTGGAGAGAGAGCCAGCTGACTGACCGCGTCTTCGCTCGCCGCAG
TCGTCAAAAACCCCCTGGCGCCCGTCGAGCACAAGGGCGGCGACGGTGTCAAGAACGAGCTTTTCGAGCTCGGCC
TCGACCAGTTCATCAGGGGCCTTATGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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