© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3613 |
| Gene name | |
| Location | Contig_1961:801..1848 |
| Strand | - |
| Gene length (bp) | 1047 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02656 | DUF202 | Domain of unknown function (DUF202) | 1.4E-22 | 159 | 240 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.0448 | 0.1193 | 0.03 | 0.3635 | 0.1971 | 0.0053 | 0.2286 | 0.6134 | 0.4164 | 0.0064 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 169 | 191 | 22 |
| 2 | 215 | 232 | 17 |
| 3 | 253 | 275 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5154 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3613 MGEGDAAQTGAGRPPSRSVSFHQRRQSTSERIDEILENARDRAESIGPAGLAPMARRRSSRTTGQQQQSGDEPSD DETTGIVSRGSGHSYLAMQTSSRTKMMAHRRRSLDEQQRAGQGRDVGANADSAIDDEGEKKPWWRKPLGRFQSIE LENKGSVARDHLALERTFLAWLRTSLAFASIGVAVTQLFRLNTSLMDDEGGSGTNHTTLRRLGKPLGATFLGISI LTLLLGFRRYFRAQEWVMRGKFPASRGTIVVVGILALAIMLVSLVLVIVIHPAEGTKRVVR* |
| Coding | >Hirsu2|3613 ATGGGCGAAGGCGACGCAGCACAGACCGGCGCGGGCAGGCCGCCCAGCAGGTCCGTGTCCTTCCATCAGCGCAGG CAGTCGACGAGCGAGCGCATCGATGAGATACTCGAGAACGCCCGCGACCGCGCCGAGAGCATAGGACCTGCCGGC CTGGCGCCCATGGCGCGCCGGCGGTCGTCCCGCACGACGGGGCAGCAGCAGCAGTCGGGAGACGAGCCGAGCGAC GATGAGACGACGGGCATCGTGTCGCGGGGGTCGGGACACAGCTATCTGGCTATGCAGACGAGCTCTCGGACGAAG ATGATGGCCCATCGCCGGCGGTCGCTCGACGAGCAACAGCGCGCAGGACAGGGCCGCGACGTCGGCGCGAATGCG GACTCGGCCATCGACGACGAAGGCGAGAAGAAGCCGTGGTGGAGGAAGCCGCTGGGCAGGTTCCAGTCGATCGAG CTGGAGAACAAGGGCAGCGTGGCGAGAGACCACCTGGCGCTGGAGCGGACCTTTCTCGCTTGGTTACGCACGTCG CTAGCGTTCGCATCGATCGGGGTCGCCGTCACGCAGCTTTTCCGACTCAACACGTCGCTCATGGATGACGAAGGC GGCAGTGGCACGAACCACACCACACTGCGGCGCCTGGGCAAGCCCCTGGGGGCCACGTTCCTGGGCATCAGCATC CTGACGCTGCTGCTGGGCTTCCGTCGCTACTTTCGCGCGCAGGAGTGGGTGATGCGAGGAAAGTTCCCGGCAAGC AGGGGCACCATCGTCGTGGTCGGCATCCTGGCCCTGGCCATCATGCTGGTGTCGCTCGTCCTGGTCATCGTGATT CACCCGGCGGAGGGAACCAAGAGAGTCGTCCGGTGA |
| Transcript | >Hirsu2|3613 ATGGGCGAAGGCGACGCAGCACAGACCGGCGCGGGCAGGCCGCCCAGCAGGTCCGTGTCCTTCCATCAGCGCAGG CAGTCGACGAGCGAGCGCATCGATGAGATACTCGAGAACGCCCGCGACCGCGCCGAGAGCATAGGACCTGCCGGC CTGGCGCCCATGGCGCGCCGGCGGTCGTCCCGCACGACGGGGCAGCAGCAGCAGTCGGGAGACGAGCCGAGCGAC GATGAGACGACGGGCATCGTGTCGCGGGGGTCGGGACACAGCTATCTGGCTATGCAGACGAGCTCTCGGACGAAG ATGATGGCCCATCGCCGGCGGTCGCTCGACGAGCAACAGCGCGCAGGACAGGGCCGCGACGTCGGCGCGAATGCG GACTCGGCCATCGACGACGAAGGCGAGAAGAAGCCGTGGTGGAGGAAGCCGCTGGGCAGGTTCCAGTCGATCGAG CTGGAGAACAAGGGCAGCGTGGCGAGAGACCACCTGGCGCTGGAGCGGACCTTTCTCGCTTGGTTACGCACGTCG CTAGCGTTCGCATCGATCGGGGTCGCCGTCACGCAGCTTTTCCGACTCAACACGTCGCTCATGGATGACGAAGGC GGCAGTGGCACGAACCACACCACACTGCGGCGCCTGGGCAAGCCCCTGGGGGCCACGTTCCTGGGCATCAGCATC CTGACGCTGCTGCTGGGCTTCCGTCGCTACTTTCGCGCGCAGGAGTGGGTGATGCGAGGAAAGTTCCCGGCAAGC AGGGGCACCATCGTCGTGGTCGGCATCCTGGCCCTGGCCATCATGCTGGTGTCGCTCGTCCTGGTCATCGTGATT CACCCGGCGGAGGGAACCAAGAGAGTCGTCCGGTGA |
| Gene | >Hirsu2|3613 ATGGGCGAAGGCGACGCAGCACAGACCGGCGCGGGCAGGCCGCCCAGCAGGTCCGTGTCCTTCCATCAGCGCAGG CAGTCGACGAGCGAGCGCATCGATGAGATACTCGAGGTGAGCGGCCTTCCTTGTCCGTCGGCCAACGCGGGGGCG GACGGGCATCCCGCGCCCTTGGTCCTCGTCCGAGGCCGATGGCTGACACGATGCGACCCAAGAACGCCCGCGACC GCGCCGAGAGCATAGGACCTGCCGGCCTGGCGCCCATGGCGCGCCGGCGGTCGTCCCGCACGACGGGGCAGCAGC AGCAGTCGGGAGACGAGCCGAGCGACGATGAGACGACGGGCATCGTGTCGCGGGGGTCGGGACACAGCTATCTGG CTATGCAGACGAGCTCTCGGACGAAGATGATGGCCCATCGCCGGCGGTCGCTCGACGAGCAACAGCGCGCAGGAC AGGGCCGCGACGTCGGCGCGAATGCGGACTCGGCCATCGACGACGAAGGCGAGAAGAAGCCGTGGTGGAGGAAGC CGCTGGGCAGGTTCCAGTCGATCGAGCTGGAGAACAAGGGCAGCGTGGCGAGAGACCACCTGGCGCTGGGTGAGC AAGACACCGCCGATGGCGCGTCCAAGATGGCTTGCTGACTCGATGCCCGCTCAACCTTGCACGCCGCCGTGGCCG AAAGAGCGGACCTTTCTCGCTTGGTTACGCACGTCGCTAGCGTTCGCATCGATCGGGGTCGCCGTCACGCAGCTT TTCCGACTCAACACGTCGCTCATGGATGACGAAGGCGGCAGTGGCACGAACCACACCACACTGCGGCGCCTGGGC AAGCCCCTGGGGGCCACGTTCCTGGGCATCAGCATCCTGACGCTGCTGCTGGGCTTCCGTCGCTACTTTCGCGCG CAGGAGTGGGTGATGCGAGGAAAGTTCCCGGCAAGCAGGGGCACCATCGTCGTGGTCGGCATCCTGGCCCTGGCC ATCATGCTGGTGTCGCTCGTCCTGGTCATCGTGATTCACCCGGCGGAGGGAACCAAGAGAGTCGTCCGGTGA |