Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3600
Gene name
LocationContig_196:8209..8620
Strand+
Gene length (bp)411
Transcript length (bp)279
Coding sequence length (bp)279
Protein length (aa) 93

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08285 DPM3 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 6.8E-34 1 90

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q76NT6|DPM3_DICDI Dolichol-phosphate mannosyltransferase subunit 3 OS=Dictyostelium discoideum GN=dpm3 PE=3 SV=1 1 91 1.0E-06

GO

GO Term Description Terminal node
GO:0006486 protein glycosylation Yes
GO:0044267 cellular protein metabolic process No
GO:0006464 cellular protein modification process No
GO:0008152 metabolic process No
GO:0009987 cellular process No
GO:1901564 organonitrogen compound metabolic process No
GO:0008150 biological_process No
GO:0043412 macromolecule modification No
GO:0044237 cellular metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0019538 protein metabolic process No
GO:0036211 protein modification process No
GO:0043413 macromolecule glycosylation No
GO:0071704 organic substance metabolic process No
GO:0070085 glycosylation No
GO:0006807 nitrogen compound metabolic process No
GO:0044238 primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 39 61 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3600
MTRAQQTISVGLLVTSLYLALYLELIPLPPLVQQQIVPVLPFWVLVSFGAVLLFRLGLGILTFNDVPQAHKELTQ
EIEMAKQELRQLGVDVD*
Coding >Hirsu2|3600
ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCCTCTATCTGGCGCTCTATCTGGAGCTG
ATCCCGCTCCCGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCC
GTCCTACTTTTCCGTCTCGGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAA
GAGATTGAAATGGCCAAGCAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA
Transcript >Hirsu2|3600
ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCCTCTATCTGGCGCTCTATCTGGAGCTG
ATCCCGCTCCCGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCC
GTCCTACTTTTCCGTCTCGGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAA
GAGATTGAAATGGCCAAGCAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA
Gene >Hirsu2|3600
ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCGTACGAGACGTCCTGTTATGCTCGTGG
TCTCGGCCCGCTTTGTGCTGACGGAATCTTCTGTCCAGCTCTATCTGGCGCTCTATCTGGAGCTGATCCCGCTCC
CGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGGTGCGCACGCCAGGCTCCTCGACCCCTTCCTCGTCCGAATCCC
GACTGACGGAGTGTTTGTCTCTAGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCCGTCCTACTTTTCCGTCTC
GGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAAGAGATTGAAATGGCCAAG
CAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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