© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3600 |
| Gene name | |
| Location | Contig_196:8209..8620 |
| Strand | + |
| Gene length (bp) | 411 |
| Transcript length (bp) | 279 |
| Coding sequence length (bp) | 279 |
| Protein length (aa) | 93 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08285 | DPM3 | Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) | 5.8E-36 | 1 | 90 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q76NT6|DPM3_DICDI | Dolichol-phosphate mannosyltransferase subunit 3 OS=Dictyostelium discoideum GN=dpm3 PE=3 SV=1 | 1 | 91 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006486 | protein glycosylation | Yes |
| GO:0043412 | macromolecule modification | No |
| GO:0070085 | glycosylation | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0008150 | biological_process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Transmembrane domain | 0.2947 | 0.1525 | 0.0777 | 0.1407 | 0.3863 | 0.0373 | 0.6735 | 0.3726 | 0.4779 | 0.0217 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5153 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3600 MTRAQQTISVGLLVTSLYLALYLELIPLPPLVQQQIVPVLPFWVLVSFGAVLLFRLGLGILTFNDVPQAHKELTQ EIEMAKQELRQLGVDVD* |
| Coding | >Hirsu2|3600 ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCCTCTATCTGGCGCTCTATCTGGAGCTG ATCCCGCTCCCGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCC GTCCTACTTTTCCGTCTCGGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAA GAGATTGAAATGGCCAAGCAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA |
| Transcript | >Hirsu2|3600 ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCCTCTATCTGGCGCTCTATCTGGAGCTG ATCCCGCTCCCGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCC GTCCTACTTTTCCGTCTCGGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAA GAGATTGAAATGGCCAAGCAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA |
| Gene | >Hirsu2|3600 ATGACGCGCGCGCAGCAGACCATCTCCGTCGGCCTCCTCGTCACTTCCGTACGAGACGTCCTGTTATGCTCGTGG TCTCGGCCCGCTTTGTGCTGACGGAATCTTCTGTCCAGCTCTATCTGGCGCTCTATCTGGAGCTGATCCCGCTCC CGCCTCTCGTCCAGCAGCAGATCGTCCCCGTGGTGCGCACGCCAGGCTCCTCGACCCCTTCCTCGTCCGAATCCC GACTGACGGAGTGTTTGTCTCTAGCTGCCCTTCTGGGTCCTCGTTTCTTTCGGCGCCGTCCTACTTTTCCGTCTC GGATTGGGCATCCTGACTTTCAACGACGTCCCTCAGGCTCACAAGGAACTGACGCAAGAGATTGAAATGGCCAAG CAGGAATTAAGACAGCTTGGCGTCGACGTGGACTGA |