© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3593 |
| Gene name | |
| Location | Contig_1956:3174..3934 |
| Strand | - |
| Gene length (bp) | 760 |
| Transcript length (bp) | 402 |
| Coding sequence length (bp) | 402 |
| Protein length (aa) | 134 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01230 | HIT | HIT domain | 5.5E-20 | 11 | 101 |
| PF11969 | DcpS_C | Scavenger mRNA decapping enzyme C-term binding | 8.5E-14 | 3 | 109 |
| PF04677 | CwfJ_C_1 | Protein similar to CwfJ C-terminus 1 | 3.0E-05 | 28 | 104 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94586|HNT1_SCHPO | Hit family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hnt1 PE=3 SV=1 | 3 | 133 | 8.0E-49 |
| sp|Q04344|HNT1_YEAST | Hit family protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNT1 PE=1 SV=2 | 2 | 133 | 1.0E-48 |
| sp|Q58276|Y866_METJA | Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0866 PE=3 SV=2 | 4 | 122 | 3.0E-30 |
| sp|P94252|YHIT_BORBU | Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0379 PE=3 SV=1 | 1 | 130 | 3.0E-22 |
| sp|O07513|HIT_BACSU | Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1 | 4 | 119 | 5.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94586|HNT1_SCHPO | Hit family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hnt1 PE=3 SV=1 | 3 | 133 | 8.0E-49 |
| sp|Q04344|HNT1_YEAST | Hit family protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNT1 PE=1 SV=2 | 2 | 133 | 1.0E-48 |
| sp|Q58276|Y866_METJA | Uncharacterized HIT-like protein MJ0866 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0866 PE=3 SV=2 | 4 | 122 | 3.0E-30 |
| sp|P94252|YHIT_BORBU | Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0379 PE=3 SV=1 | 1 | 130 | 3.0E-22 |
| sp|O07513|HIT_BACSU | Protein hit OS=Bacillus subtilis (strain 168) GN=hit PE=1 SV=1 | 4 | 119 | 5.0E-21 |
| sp|P9WML1|YHI2_MYCTU | Uncharacterized HIT-like protein Rv1262c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1262c PE=3 SV=1 | 4 | 103 | 5.0E-20 |
| sp|P9WML0|YHI2_MYCTO | Uncharacterized HIT-like protein MT1300 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1300 PE=3 SV=1 | 4 | 103 | 5.0E-20 |
| sp|P64382|YHIT_HELPY | Uncharacterized HIT-like protein HP_0404 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0404 PE=1 SV=1 | 5 | 99 | 5.0E-16 |
| sp|P64383|YHIT_HELPJ | Uncharacterized HIT-like protein jhp_0977 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_0977 PE=3 SV=1 | 5 | 99 | 5.0E-16 |
| sp|P47378|YHIT_MYCGE | Uncharacterized HIT-like protein MG132 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG132 PE=3 SV=1 | 2 | 108 | 1.0E-15 |
| sp|P32083|YHIT_MYCHR | Uncharacterized 13.1 kDa HIT-like protein in P37 5'region OS=Mycoplasma hyorhinis PE=3 SV=1 | 5 | 100 | 5.0E-15 |
| sp|P75504|YHIT_MYCPN | Uncharacterized 16.1 kDa HIT-like protein OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_273 PE=3 SV=1 | 4 | 101 | 9.0E-15 |
| sp|O66536|YHIT_AQUAE | Uncharacterized HIT-like protein aq_141 OS=Aquifex aeolicus (strain VF5) GN=aq_141 PE=3 SV=1 | 4 | 113 | 3.0E-14 |
| sp|C4LYI2|HIT_ENTHI | Histidine triad nucleotide-binding protein OS=Entamoeba histolytica GN=EHI_093910 PE=1 SV=1 | 3 | 112 | 6.0E-14 |
| sp|P26724|YHIT_AZOBR | Uncharacterized 13.2 kDa HIT-like protein in hisE 3'region OS=Azospirillum brasilense PE=3 SV=1 | 5 | 99 | 2.0E-13 |
| sp|P95937|YHIT_SULSO | Uncharacterized HIT-like protein SSO2163 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2163 PE=3 SV=1 | 4 | 100 | 2.0E-13 |
| sp|P42856|ZB14_MAIZE | 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1 | 2 | 113 | 2.0E-12 |
| sp|O07817|HITA_NEIGO | Protein HitA OS=Neisseria gonorrhoeae GN=hitA PE=3 SV=1 | 1 | 102 | 1.0E-11 |
| sp|Q5RF69|HINT1_PONAB | Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3 | 5 | 113 | 3.0E-11 |
| sp|P62959|HINT1_RAT | Histidine triad nucleotide-binding protein 1 OS=Rattus norvegicus GN=Hint1 PE=1 SV=5 | 5 | 113 | 3.0E-11 |
| sp|P70349|HINT1_MOUSE | Histidine triad nucleotide-binding protein 1 OS=Mus musculus GN=Hint1 PE=1 SV=3 | 5 | 113 | 3.0E-11 |
| sp|P53795|HINT_CAEEL | Histidine triad nucleotide-binding protein 1 OS=Caenorhabditis elegans GN=hint-1 PE=3 SV=1 | 4 | 113 | 4.0E-11 |
| sp|P49773|HINT1_HUMAN | Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2 | 5 | 113 | 4.0E-11 |
| sp|P32084|Y1390_SYNE7 | Uncharacterized HIT-like protein Synpcc7942_1390 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1390 PE=3 SV=1 | 5 | 113 | 7.0E-11 |
| sp|P80912|HINT1_RABIT | Histidine triad nucleotide-binding protein 1 OS=Oryctolagus cuniculus GN=HINT1 PE=1 SV=2 | 5 | 113 | 7.0E-11 |
| sp|P62958|HINT1_BOVIN | Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1 PE=1 SV=2 | 5 | 113 | 1.0E-10 |
| sp|Q9Z863|YHIT_CHLPN | HIT-like protein CPn_0488/CP_0266/CPj0488/CpB0508 OS=Chlamydia pneumoniae GN=CPn_0488 PE=3 SV=1 | 5 | 99 | 2.0E-10 |
| sp|Q23921|PKIA_DICDI | Protein pkiA OS=Dictyostelium discoideum GN=pkiA PE=1 SV=2 | 4 | 113 | 3.0E-10 |
| sp|P42855|ZB14_BRAJU | 14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=2 SV=1 | 4 | 113 | 5.0E-10 |
| sp|Q9D0S9|HINT2_MOUSE | Histidine triad nucleotide-binding protein 2, mitochondrial OS=Mus musculus GN=Hint2 PE=1 SV=1 | 5 | 113 | 9.0E-10 |
| sp|P73481|YHIT_SYNY3 | Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1234 PE=3 SV=1 | 5 | 113 | 2.0E-09 |
| sp|Q8SQ21|HINT2_BOVIN | Histidine triad nucleotide-binding protein 2, mitochondrial OS=Bos taurus GN=HINT2 PE=2 SV=1 | 5 | 113 | 5.0E-09 |
| sp|Q9BX68|HINT2_HUMAN | Histidine triad nucleotide-binding protein 2, mitochondrial OS=Homo sapiens GN=HINT2 PE=1 SV=1 | 2 | 113 | 1.0E-08 |
| sp|Q9ZDL1|YHIT_RICPR | Uncharacterized HIT-like protein RP317 OS=Rickettsia prowazekii (strain Madrid E) GN=RP317 PE=3 SV=1 | 5 | 99 | 1.0E-07 |
| sp|Q9CPS6|HINT3_MOUSE | Histidine triad nucleotide-binding protein 3 OS=Mus musculus GN=Hint3 PE=1 SV=1 | 2 | 99 | 1.0E-07 |
| sp|P44956|Y961_HAEIN | HIT-like protein HI_0961 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0961 PE=1 SV=1 | 4 | 99 | 1.0E-07 |
| sp|P9WML3|YHI1_MYCTU | Uncharacterized HIT-like protein Rv0759c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0759c PE=1 SV=1 | 4 | 100 | 2.0E-07 |
| sp|P9WML2|YHI1_MYCTO | Uncharacterized HIT-like protein MT0784 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0784 PE=3 SV=1 | 4 | 100 | 2.0E-07 |
| sp|P0A5B6|YHI1_MYCBO | Uncharacterized HIT-like protein Mb0782c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0782c PE=3 SV=1 | 4 | 100 | 2.0E-07 |
| sp|O84390|YHIT_CHLTR | Uncharacterized HIT-like protein CT_385 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_385 PE=3 SV=1 | 5 | 91 | 8.0E-07 |
| sp|P49774|YHI1_MYCLE | Uncharacterized HIT-like protein ML2237 OS=Mycobacterium leprae (strain TN) GN=ML2237 PE=3 SV=2 | 3 | 100 | 1.0E-06 |
| sp|Q8K3P7|HINT3_RAT | Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus GN=Hint3 PE=2 SV=2 | 2 | 104 | 2.0E-06 |
| sp|Q9PK09|Y664_CHLMU | Uncharacterized HIT-like protein TC_0664 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0664 PE=3 SV=1 | 4 | 91 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.654 | 0.4465 | 0.0463 | 0.094 | 0.1774 | 0.0111 | 0.0827 | 0.1234 | 0.0388 | 0.1571 |
| Orthofinder run ID | 4 |
| Orthogroup | 6108 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3593 MAACIFCRIIKGEIPCMKLFESEKTLAFLDIGPLSRGHALVIPKHHGQTLVDIPDDHLIEILPTLKKLVTATGAT DYNILQNNGTIAHQQVHHVHFHMIPKPNETEGLKIGWPATTVDMDKLNVLCEDIRSKM* |
| Coding | >Hirsu2|3593 ATGGCAGCCTGTATCTTCTGTCGCATCATCAAGGGCGAGATACCCTGCATGAAACTCTTTGAGAGCGAAAAAACG CTCGCCTTCCTCGACATCGGTCCTCTCAGCAGGGGCCATGCTCTCGTCATTCCCAAGCACCATGGCCAGACGCTG GTAGATATACCCGACGACCACTTAATTGAGATTCTACCTACACTGAAGAAGCTCGTCACGGCGACTGGCGCCACC GACTACAATATCCTCCAAAACAACGGCACCATAGCCCACCAGCAGGTTCACCACGTCCACTTCCATATGATACCC AAGCCGAATGAGACTGAGGGCCTGAAAATCGGATGGCCTGCTACGACCGTCGACATGGACAAGCTAAATGTGCTT TGTGAGGACATCAGGTCCAAGATGTAG |
| Transcript | >Hirsu2|3593 ATGGCAGCCTGTATCTTCTGTCGCATCATCAAGGGCGAGATACCCTGCATGAAACTCTTTGAGAGCGAAAAAACG CTCGCCTTCCTCGACATCGGTCCTCTCAGCAGGGGCCATGCTCTCGTCATTCCCAAGCACCATGGCCAGACGCTG GTAGATATACCCGACGACCACTTAATTGAGATTCTACCTACACTGAAGAAGCTCGTCACGGCGACTGGCGCCACC GACTACAATATCCTCCAAAACAACGGCACCATAGCCCACCAGCAGGTTCACCACGTCCACTTCCATATGATACCC AAGCCGAATGAGACTGAGGGCCTGAAAATCGGATGGCCTGCTACGACCGTCGACATGGACAAGCTAAATGTGCTT TGTGAGGACATCAGGTCCAAGATGTAG |
| Gene | >Hirsu2|3593 ATGGCAGCCTGTATCTTCTGTCGCATCATCAAGGGTAGCTCGCCGACATCATACATGGACCATGTACGAAGTCGC GCCAAGTTGTGCTCAGTCGCTGACGTTGCGGCTCCGAATGATTGCAGGCGAGATACCCTGCATGAAACTCTTTGA GAGCGAAAAAACGCTCGCCTTCCTCGACATCGGTCCTCTCAGCAGGGGCCATGCTGTGCGTTCCCTGTGAATTCT TGGACTTCTTGCTGCTCACCCATCCTTGCTCGCGGCGAGCTTTCTCGACAACGTTCCAACAGCTCGTCATTCCCA AGCACCATGGCCAGACGCTGGTAGATATACCCGACGACCACTTAATTGAGATTCTAGTGAGTGCCATCGTCGATA CCAAATCTCGTCACCAACACCGCTCACTATTCTACCTCTGAGCAGCCTACACTGAAGAAGCTCGTCACGGCGACT GGCGCCACCGACTACAATATCCTCCAAAACAACGGCACCATAGCCCACCAGCAGGTTCACCACGTAAGCCATCGC GGGTAGTCTTTTCCAGAACATCGAAATCTGACTCGGCCTTACGACCAGGTCCACTTCCATATGGTTCGCGCGCCC GTGGCTCTCGCCCCCAAACCAGCCGCAGACAGCTGACGCAAACCGCGGTCAGATACCCAAGCCGAATGAGACTGA GGGCCTGAAAATCGGATGGCCTGCTACGACCGTCGACATGGACAAGCTAAATGTGCTTTGTGAGGACATCAGGTC CAAGATGTAG |