© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3580 |
| Gene name | |
| Location | Contig_195:20470..21868 |
| Strand | - |
| Gene length (bp) | 1398 |
| Transcript length (bp) | 1125 |
| Coding sequence length (bp) | 1125 |
| Protein length (aa) | 375 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02492 | cobW | CobW/HypB/UreG, nucleotide-binding domain | 6.2E-50 | 27 | 224 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99MB4|CBWD1_RAT | COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 | 24 | 336 | 1.0E-88 |
| sp|Q8VEH6|CBWD1_MOUSE | COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=1 SV=1 | 9 | 356 | 4.0E-88 |
| sp|Q9BRT8|CBWD1_HUMAN | COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 | 5 | 356 | 7.0E-88 |
| sp|Q8IUF1|CBWD2_HUMAN | COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 | 5 | 356 | 9.0E-88 |
| sp|Q5JTY5|CBWD3_HUMAN | COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 | 5 | 356 | 3.0E-85 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99MB4|CBWD1_RAT | COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 | 24 | 336 | 1.0E-88 |
| sp|Q8VEH6|CBWD1_MOUSE | COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=1 SV=1 | 9 | 356 | 4.0E-88 |
| sp|Q9BRT8|CBWD1_HUMAN | COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 | 5 | 356 | 7.0E-88 |
| sp|Q8IUF1|CBWD2_HUMAN | COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 | 5 | 356 | 9.0E-88 |
| sp|Q5JTY5|CBWD3_HUMAN | COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 | 5 | 356 | 3.0E-85 |
| sp|Q5RIA9|CBWD5_HUMAN | COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1 | 5 | 356 | 1.0E-84 |
| sp|Q4V339|CBWD6_HUMAN | COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=3 SV=1 | 5 | 356 | 6.0E-84 |
| sp|O74310|YOG5_SCHPO | COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1 | 26 | 356 | 3.0E-72 |
| sp|P53729|YN8H_YEAST | Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1 | 14 | 369 | 5.0E-72 |
| sp|Q869Q0|Y4527_DICDI | COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1 | 25 | 251 | 5.0E-30 |
| sp|P94400|YCIC_BACSU | Putative metal chaperone YciC OS=Bacillus subtilis (strain 168) GN=yciC PE=2 SV=1 | 25 | 223 | 9.0E-30 |
| sp|Q9HZQ2|COBW_PSEAE | Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1 | 25 | 215 | 1.0E-29 |
| sp|P31521|P47K_PSECL | 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1 | 25 | 246 | 1.0E-26 |
| sp|A6NM15|CBWD7_HUMAN | Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7 PE=5 SV=3 | 133 | 356 | 5.0E-26 |
| sp|P24203|YJIA_ECOLI | Uncharacterized GTP-binding protein YjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3 | 26 | 331 | 4.0E-25 |
| sp|P29937|COBW_PSEDE | Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3 | 25 | 217 | 7.0E-25 |
| sp|P33030|YEIR_ECOLI | Zinc-binding GTPase YeiR OS=Escherichia coli (strain K12) GN=yeiR PE=1 SV=2 | 29 | 290 | 5.0E-12 |
| sp|P22042|YTR2_SPIAU | Uncharacterized protein in trpE 3'region (Fragment) OS=Spirochaeta aurantia PE=4 SV=1 | 23 | 65 | 2.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.7266 | 0.3955 | 0.0355 | 0.027 | 0.288 | 0.0102 | 0.1438 | 0.1318 | 0.2145 | 0.0992 |
| Orthofinder run ID | 4 |
| Orthogroup | 2481 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3580 MPPDEDAPPDLVDTAGETLEELSVKVPITIVTGYLGAGKTTLLNYILTAQHGKKIAVIMNEFGDSLDIEKSLTVN KGEEKFEEWLEVGNGCICCSVKDTGVNAIESLMEKKGAFDYILLETTGLADPGNLAPLFWVDDGLASTIYLDGIV TLVDAKNIFRSLEDPSGKVDGDDSHRDKGPLMTTAHVQISHADVVVINKADLVSDDELRRVKERIQSINGLAKVH VTEKSVVPRLDGFLLDLHAYDQFDEHEARAKGHSHLDPAIATICIPVPRLQPHQLDDVDRWLRSVLWENRLPEAS SQGDFEIHRSKGRIILQDGSVRMLQGVREVFELTEAPKLEEAQPAEGKIILIGRRVAGVDFEGSFSKTINCGQE* |
| Coding | >Hirsu2|3580 ATGCCGCCGGACGAGGATGCCCCTCCAGATTTGGTTGACACTGCGGGGGAGACACTCGAGGAGCTGTCGGTCAAG GTTCCCATCACGATAGTGACCGGGTATCTCGGAGCCGGGAAGACTACTCTCTTAAACTACATTCTCACAGCCCAG CATGGCAAGAAGATCGCCGTCATCATGAACGAGTTTGGTGATTCACTGGATATCGAAAAGTCCCTGACCGTCAAC AAGGGCGAGGAGAAGTTTGAGGAGTGGCTCGAAGTCGGAAACGGCTGCATATGCTGCTCCGTCAAGGACACTGGC GTGAACGCCATCGAGTCGCTCATGGAAAAGAAGGGCGCTTTCGATTACATACTGCTCGAGACAACCGGCCTGGCG GACCCTGGCAACCTAGCACCACTCTTCTGGGTAGACGACGGTCTCGCCAGCACGATATACCTGGACGGCATCGTG ACCCTGGTCGATGCCAAGAACATATTCCGCAGCCTCGAGGACCCGAGCGGCAAGGTAGATGGCGACGATTCGCAC CGAGACAAGGGTCCGTTGATGACGACGGCGCATGTGCAAATCTCGCATGCGGACGTCGTCGTCATCAACAAGGCC GACCTGGTGAGCGATGATGAGCTCCGCCGGGTCAAGGAGAGGATACAGTCCATCAATGGCCTAGCAAAGGTGCAT GTGACGGAGAAGAGCGTTGTGCCTCGGCTGGACGGCTTCTTGCTTGATCTACATGCCTATGATCAATTCGACGAG CATGAGGCCAGAGCCAAAGGACACAGCCACCTGGATCCGGCCATCGCTACGATTTGCATACCCGTTCCGCGGCTG CAGCCGCATCAGCTGGACGACGTCGATCGCTGGCTACGTTCGGTGCTCTGGGAGAACAGACTGCCGGAAGCAAGC AGTCAGGGCGACTTCGAGATCCATCGCTCCAAGGGCCGCATCATCTTGCAAGACGGAAGTGTGCGGATGCTGCAA GGCGTCAGAGAGGTTTTTGAGCTCACCGAGGCTCCGAAGCTCGAGGAAGCACAGCCCGCAGAGGGGAAGATCATC CTCATCGGCCGACGCGTGGCGGGCGTGGATTTCGAGGGCAGCTTTAGCAAGACCATCAACTGCGGACAAGAGTAG |
| Transcript | >Hirsu2|3580 ATGCCGCCGGACGAGGATGCCCCTCCAGATTTGGTTGACACTGCGGGGGAGACACTCGAGGAGCTGTCGGTCAAG GTTCCCATCACGATAGTGACCGGGTATCTCGGAGCCGGGAAGACTACTCTCTTAAACTACATTCTCACAGCCCAG CATGGCAAGAAGATCGCCGTCATCATGAACGAGTTTGGTGATTCACTGGATATCGAAAAGTCCCTGACCGTCAAC AAGGGCGAGGAGAAGTTTGAGGAGTGGCTCGAAGTCGGAAACGGCTGCATATGCTGCTCCGTCAAGGACACTGGC GTGAACGCCATCGAGTCGCTCATGGAAAAGAAGGGCGCTTTCGATTACATACTGCTCGAGACAACCGGCCTGGCG GACCCTGGCAACCTAGCACCACTCTTCTGGGTAGACGACGGTCTCGCCAGCACGATATACCTGGACGGCATCGTG ACCCTGGTCGATGCCAAGAACATATTCCGCAGCCTCGAGGACCCGAGCGGCAAGGTAGATGGCGACGATTCGCAC CGAGACAAGGGTCCGTTGATGACGACGGCGCATGTGCAAATCTCGCATGCGGACGTCGTCGTCATCAACAAGGCC GACCTGGTGAGCGATGATGAGCTCCGCCGGGTCAAGGAGAGGATACAGTCCATCAATGGCCTAGCAAAGGTGCAT GTGACGGAGAAGAGCGTTGTGCCTCGGCTGGACGGCTTCTTGCTTGATCTACATGCCTATGATCAATTCGACGAG CATGAGGCCAGAGCCAAAGGACACAGCCACCTGGATCCGGCCATCGCTACGATTTGCATACCCGTTCCGCGGCTG CAGCCGCATCAGCTGGACGACGTCGATCGCTGGCTACGTTCGGTGCTCTGGGAGAACAGACTGCCGGAAGCAAGC AGTCAGGGCGACTTCGAGATCCATCGCTCCAAGGGCCGCATCATCTTGCAAGACGGAAGTGTGCGGATGCTGCAA GGCGTCAGAGAGGTTTTTGAGCTCACCGAGGCTCCGAAGCTCGAGGAAGCACAGCCCGCAGAGGGGAAGATCATC CTCATCGGCCGACGCGTGGCGGGCGTGGATTTCGAGGGCAGCTTTAGCAAGACCATCAACTGCGGACAAGAGTAG |
| Gene | >Hirsu2|3580 ATGCCGCCGGACGAGGATGCCCCTCCAGATTTGGTTGACACTGCGGGGGAGACACTCGAGGAGCTGTCGGTCAAG GTTCCCATCACGATAGTGACCGGTAGGTAGAAGCCGGCTGCGCAAGGGTACACCTGCTCAAATAAGCTGCACCAG GGTATCTCGGAGCCGGGAAGACTACTCTCTTAAACTACATTCTCACAGCCCAGCATGGCAAGAAGATCGCCGTCA TCATGAACGGTCAGGGAGTCCATCACCCGACCTGGCAAGACTCTTGCTGACCCCGTCCAGAGTTTGGTGATTGTG AGTGACAAGAGTGGCATGAGTTGTGGGAAGCATCTAATCACCCTGCAGCACTGGATATCGAAAAGTCCCTGACCG TCAACAAGGGCGAGGAGAAGTTTGAGGAGTGGCTCGAAGTCGGAAACGGCTGCATATGCTGCTCCGTCAAGTGCG CTGGCCCGCCCAGAAGCCAGCATCGTTTCCCAAGGTACTCACGACTGGCTTAGGGACACTGGCGTGAACGCCATC GAGTCGCTCATGGAAAAGAAGGGCGCTTTCGATTACATACTGCTCGAGACAACCGGCCTGGCGGACCCTGGCAAC CTAGCACCACTCTTCTGGGTAGACGACGGTCTCGCCAGCACGATATACCTGGACGGCATCGTGACCCTGGTCGAT GCCAAGAACATATTCCGCAGCCTCGAGGACCCGAGCGGCAAGGTAGATGGCGACGATTCGCACCGAGACAAGGGT CCGTTGATGACGACGGCGCATGTGCAAATCTCGCATGCGGACGTCGTCGTCATCAACAAGGCCGACCTGGTGAGC GATGATGAGCTCCGCCGGGTCAAGGAGAGGATACAGTCCATCAATGGCCTAGCAAAGGTGCATGTGACGGAGAAG AGCGTTGTGCCTCGGCTGGACGGCTTCTTGCTTGATCTACATGCCTATGATCAATTCGACGAGCATGAGGCCAGA GCCAAAGGACACAGCCACCTGGATCCGGTCAGTGTCGCGCAGCCCTCTGCGCAGAGCCGACAGCGCGAAACGAGC TGACTTTGACAGGCCATCGCTACGATTTGCATACCCGTTCCGCGGCTGCAGCCGCATCAGCTGGACGACGTCGAT CGCTGGCTACGTTCGGTGCTCTGGGAGAACAGACTGCCGGAAGCAAGCAGTCAGGGCGACTTCGAGATCCATCGC TCCAAGGGCCGCATCATCTTGCAAGACGGAAGTGTGCGGATGCTGCAAGGCGTCAGAGAGGTTTTTGAGCTCACC GAGGCTCCGAAGCTCGAGGAAGCACAGCCCGCAGAGGGGAAGATCATCCTCATCGGCCGACGCGTGGCGGGCGTG GATTTCGAGGGCAGCTTTAGCAAGACCATCAACTGCGGACAAGAGTAG |