© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|358 |
| Gene name | |
| Location | Contig_107:2331..3911 |
| Strand | - |
| Gene length (bp) | 1580 |
| Transcript length (bp) | 1356 |
| Coding sequence length (bp) | 1356 |
| Protein length (aa) | 452 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01424 | R3H | R3H domain | 1.8E-14 | 184 | 243 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74853|FAP1H_SCHPO | FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fap1 PE=1 SV=1 | 8 | 403 | 8.0E-43 |
| sp|Q12986|NFX1_HUMAN | Transcriptional repressor NF-X1 OS=Homo sapiens GN=NFX1 PE=1 SV=2 | 3 | 266 | 4.0E-32 |
| sp|A6QLA0|NFX1_BOVIN | Transcriptional repressor NF-X1 OS=Bos taurus GN=NFX1 PE=2 SV=1 | 3 | 278 | 8.0E-32 |
| sp|B1AY10|NFX1_MOUSE | Transcriptional repressor NF-X1 OS=Mus musculus GN=Nfx1 PE=1 SV=1 | 3 | 266 | 4.0E-31 |
| sp|P53971|FAP1_YEAST | FKBP12-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAP1 PE=1 SV=1 | 5 | 387 | 3.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74853|FAP1H_SCHPO | FKBP12-associated protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fap1 PE=1 SV=1 | 8 | 403 | 8.0E-43 |
| sp|Q12986|NFX1_HUMAN | Transcriptional repressor NF-X1 OS=Homo sapiens GN=NFX1 PE=1 SV=2 | 3 | 266 | 4.0E-32 |
| sp|A6QLA0|NFX1_BOVIN | Transcriptional repressor NF-X1 OS=Bos taurus GN=NFX1 PE=2 SV=1 | 3 | 278 | 8.0E-32 |
| sp|B1AY10|NFX1_MOUSE | Transcriptional repressor NF-X1 OS=Mus musculus GN=Nfx1 PE=1 SV=1 | 3 | 266 | 4.0E-31 |
| sp|P53971|FAP1_YEAST | FKBP12-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAP1 PE=1 SV=1 | 5 | 387 | 3.0E-29 |
| sp|Q18034|NFX1_CAEEL | Transcriptional repressor NF-X1 homolog OS=Caenorhabditis elegans GN=nfx-1 PE=3 SV=1 | 3 | 241 | 1.0E-20 |
| sp|P40798|STC_DROME | Protein shuttle craft OS=Drosophila melanogaster GN=stc PE=1 SV=2 | 3 | 241 | 1.0E-17 |
| sp|Q9SY59|NFXL1_ARATH | NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1 | 8 | 314 | 1.0E-17 |
| sp|Q9FFK8|NFXL2_ARATH | NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana GN=NFXL2 PE=1 SV=2 | 11 | 134 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|358 MRHADVACPKCPFLVGKWCACGKEKLQSQPCHLQEAHCGRPCGKRLKCGLHSCRKLCHRPGECEDVQVPDKRCDQ VCGKTKLFCEHPCQKPCHGQTTCNESAACTAKAMVSCPCGLRLLEVKCLASSSNPAPPRPDVKCDDECLRMDRNR RLAAALNIDPSSHTNDHVPYSDISLKLFKENVAWAETQEREFRVFSKSPNEVRMRYKPMSSTYRQFLHALAEDYG LESRSEDVEPHRYVVVFKGSRFVSAPTKTLAQCVKIREMQAAEAAATSRPPSPPPGPGPEPFNSFLLTSPRFGLT VEEVKAALEGELASQPSIHFAISFLPTEEILLRATAHYSAFLSPAAMEQALTGLKPGLAKAVKGTGVAGSILLCR ADAGEHISRREDLSSKGSSGWSAVAGRAAARGPSAPPTEEAPARGGGRKLLGLRRKKAAEQGGGKTWDALGGDVE C* |
| Coding | >Hirsu2|358 ATGCGGCACGCCGACGTTGCTTGCCCGAAGTGCCCCTTTCTCGTCGGAAAGTGGTGCGCCTGCGGCAAAGAAAAG CTCCAGAGCCAGCCATGCCACCTGCAAGAGGCGCACTGTGGCAGGCCCTGCGGCAAGAGGCTCAAGTGCGGGCTG CACAGTTGCCGGAAGCTATGCCATCGACCCGGCGAATGCGAGGATGTCCAGGTTCCGGACAAACGTTGCGACCAG GTCTGTGGCAAGACAAAGCTCTTCTGCGAGCATCCGTGCCAGAAACCGTGCCACGGGCAGACCACCTGCAACGAG TCTGCTGCTTGCACCGCCAAAGCCATGGTCAGCTGTCCCTGCGGCCTTCGTCTGCTGGAGGTGAAATGCCTGGCA AGCAGCTCGAACCCGGCACCCCCCAGGCCGGACGTCAAGTGCGATGACGAGTGTCTCCGGATGGATCGTAACCGC CGCCTCGCAGCCGCGCTCAACATTGACCCGTCGTCGCACACCAACGACCACGTTCCCTACTCGGACATTTCCCTC AAGCTGTTCAAGGAGAACGTGGCGTGGGCCGAGACGCAGGAGCGTGAGTTCCGCGTCTTCTCGAAGAGCCCGAAC GAGGTCAGGATGCGCTACAAACCCATGTCGTCTACGTACCGGCAGTTCCTGCACGCCCTGGCGGAAGATTACGGC CTCGAGAGCAGAAGCGAGGACGTCGAGCCGCATCGCTATGTCGTCGTCTTCAAGGGCTCCCGATTCGTGTCTGCG CCGACCAAGACGCTGGCGCAGTGCGTCAAGATCCGCGAGATGCAGGCGGCGGAGGCGGCGGCGACGTCGCGGCCC CCCAGCCCGCCTCCCGGGCCGGGCCCCGAACCATTCAACAGTTTCCTCCTGACGTCGCCCCGGTTCGGCCTTACC GTGGAAGAAGTCAAGGCGGCGCTGGAGGGAGAACTGGCTTCGCAGCCGTCGATACACTTCGCCATCAGCTTTCTC CCGACCGAAGAGATTCTCCTCCGGGCCACGGCCCACTACTCGGCGTTCCTGTCGCCGGCCGCCATGGAACAAGCG CTCACGGGCCTGAAGCCGGGCCTCGCCAAGGCGGTCAAGGGCACCGGCGTGGCGGGCAGCATCCTGCTCTGCCGT GCGGACGCGGGCGAGCACATCTCGCGACGGGAGGACCTGAGCAGCAAGGGCAGTTCGGGGTGGAGCGCCGTGGCG GGAAGGGCGGCGGCTCGGGGCCCGTCGGCCCCACCAACGGAGGAGGCGCCGGCGCGGGGCGGCGGGCGCAAGCTC CTGGGCCTGCGGAGGAAGAAGGCGGCGGAGCAGGGGGGCGGCAAGACGTGGGACGCCCTGGGGGGAGACGTCGAG TGCTGA |
| Transcript | >Hirsu2|358 ATGCGGCACGCCGACGTTGCTTGCCCGAAGTGCCCCTTTCTCGTCGGAAAGTGGTGCGCCTGCGGCAAAGAAAAG CTCCAGAGCCAGCCATGCCACCTGCAAGAGGCGCACTGTGGCAGGCCCTGCGGCAAGAGGCTCAAGTGCGGGCTG CACAGTTGCCGGAAGCTATGCCATCGACCCGGCGAATGCGAGGATGTCCAGGTTCCGGACAAACGTTGCGACCAG GTCTGTGGCAAGACAAAGCTCTTCTGCGAGCATCCGTGCCAGAAACCGTGCCACGGGCAGACCACCTGCAACGAG TCTGCTGCTTGCACCGCCAAAGCCATGGTCAGCTGTCCCTGCGGCCTTCGTCTGCTGGAGGTGAAATGCCTGGCA AGCAGCTCGAACCCGGCACCCCCCAGGCCGGACGTCAAGTGCGATGACGAGTGTCTCCGGATGGATCGTAACCGC CGCCTCGCAGCCGCGCTCAACATTGACCCGTCGTCGCACACCAACGACCACGTTCCCTACTCGGACATTTCCCTC AAGCTGTTCAAGGAGAACGTGGCGTGGGCCGAGACGCAGGAGCGTGAGTTCCGCGTCTTCTCGAAGAGCCCGAAC GAGGTCAGGATGCGCTACAAACCCATGTCGTCTACGTACCGGCAGTTCCTGCACGCCCTGGCGGAAGATTACGGC CTCGAGAGCAGAAGCGAGGACGTCGAGCCGCATCGCTATGTCGTCGTCTTCAAGGGCTCCCGATTCGTGTCTGCG CCGACCAAGACGCTGGCGCAGTGCGTCAAGATCCGCGAGATGCAGGCGGCGGAGGCGGCGGCGACGTCGCGGCCC CCCAGCCCGCCTCCCGGGCCGGGCCCCGAACCATTCAACAGTTTCCTCCTGACGTCGCCCCGGTTCGGCCTTACC GTGGAAGAAGTCAAGGCGGCGCTGGAGGGAGAACTGGCTTCGCAGCCGTCGATACACTTCGCCATCAGCTTTCTC CCGACCGAAGAGATTCTCCTCCGGGCCACGGCCCACTACTCGGCGTTCCTGTCGCCGGCCGCCATGGAACAAGCG CTCACGGGCCTGAAGCCGGGCCTCGCCAAGGCGGTCAAGGGCACCGGCGTGGCGGGCAGCATCCTGCTCTGCCGT GCGGACGCGGGCGAGCACATCTCGCGACGGGAGGACCTGAGCAGCAAGGGCAGTTCGGGGTGGAGCGCCGTGGCG GGAAGGGCGGCGGCTCGGGGCCCGTCGGCCCCACCAACGGAGGAGGCGCCGGCGCGGGGCGGCGGGCGCAAGCTC CTGGGCCTGCGGAGGAAGAAGGCGGCGGAGCAGGGGGGCGGCAAGACGTGGGACGCCCTGGGGGGAGACGTCGAG TGCTGA |
| Gene | >Hirsu2|358 ATGCGGCACGCGTGCGCCGGAGTGTCGCTTCAACTGCCAAAGACGACCCGACTGCGGCCATCCTCCCATCGACCA CGGCTGCCACCCCAGCGACGTTGCTTGCCCGAAGTGCCCCTTTCTCGTCGGAAAGTGGTGCGCCTGCGGCAAAGA AAAGCTCCAGAGCCAGCCATGCCACCTGCAAGAGGCGCACTGTGGCAGGCCCTGCGGCAAGAGGCTCAAGTGCGG GTATGTTGTGATCGTCCCTCGCCGGGACCGGCTTGACCCGGTGACGGCCAGCCATGCTAACAAAGTCCTTCCGTC CCGGCTCCAGGCTGCACAGTTGCCGGAAGCTATGCCATCGACCCGGCGAATGCGAGGATGTCCAGGTTCCGGACA AACGTTGCGACCAGGTCTGTGGCAAGACAAAGCTCTTCTGCGAGCATCCGTGCCAGAAACCGTGCCACGGGCAGA CCAGTAAGCCTGACACCGTGAGACGCGATGGCTGCAAGACATGGACGAACTGACAGACCGAAGCCTGCAACGAGT CTGCTGCTTGCACCGCCAAAGCCATGGTCAGCTGTCCCTGCGGCCTTCGTCTGCTGGAGGTGAAATGCCTGGCAA GCAGCTCGAACCCGGCACCCCCCAGGCCGGACGTCAAGTGCGATGACGAGTGTCTCCGGATGGATCGTAACCGCC GCCTCGCAGCCGCGCTCAACATTGACCCGTCGTCGCACACCAACGACCACGTTCCCTACTCGGACATTTCCCTCA AGCTGTTCAAGGAGAACGTGGCGTGGGCCGAGACGCAGGAGCGTGAGTTCCGCGTCTTCTCGAAGAGCCCGAACG AGGTCAGGATGCGCTACAAACCCATGTCGTCTACGTACCGGCAGTTCCTGCACGCCCTGGCGGAAGATTACGGCC TCGAGAGCAGAAGCGAGGACGTCGAGCCGCATCGCTATGTCGTCGTCTTCAAGGGCTCCCGATTCGTGTCTGCGC CGACCAAGACGCTGGCGCAGTGCGTCAAGATCCGCGAGATGCAGGCGGCGGAGGCGGCGGCGACGTCGCGGCCCC CCAGCCCGCCTCCCGGGCCGGGCCCCGAACCATTCAACAGTTTCCTCCTGACGTCGCCCCGGTTCGGCCTTACCG TGGAAGAAGTCAAGGCGGCGCTGGAGGGAGAACTGGCTTCGCAGCCGTCGATACACTTCGCCATCAGCTTTCTCC CGACCGAAGAGATTCTCCTCCGGGCCACGGCCCACTACTCGGCGTTCCTGTCGCCGGCCGCCATGGAACAAGCGC TCACGGGCCTGAAGCCGGGCCTCGCCAAGGCGGTCAAGGGCACCGGCGTGGCGGGCAGCATCCTGCTCTGCCGTG CGGACGCGGGCGAGCACATCTCGCGACGGGAGGACCTGAGCAGCAAGGGCAGTTCGGGGTGGAGCGCCGTGGCGG GAAGGGCGGCGGCTCGGGGCCCGTCGGCCCCACCAACGGAGGAGGCGCCGGCGCGGGGCGGCGGGCGCAAGCTCC TGGGCCTGCGGAGGAAGAAGGCGGCGGAGCAGGGGGGCGGCAAGACGTGGGACGCCCTGGGGGGAGACGTCGAGT GCTGA |