© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3579 |
| Gene name | |
| Location | Contig_195:17334..19878 |
| Strand | - |
| Gene length (bp) | 2544 |
| Transcript length (bp) | 1395 |
| Coding sequence length (bp) | 1395 |
| Protein length (aa) | 465 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04153 | NOT2_3_5 | NOT2 / NOT3 / NOT5 family | 4.1E-30 | 345 | 456 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87240|NOT2_SCHPO | General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 | 308 | 457 | 1.0E-31 |
| sp|Q9NZN8|CNOT2_HUMAN | CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 | 290 | 457 | 2.0E-25 |
| sp|Q8C5L3|CNOT2_MOUSE | CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=1 SV=2 | 290 | 457 | 3.0E-25 |
| sp|Q52JK6|VIP2_NICBE | Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 | 280 | 457 | 7.0E-24 |
| sp|Q9FPW4|VIP2_ARATH | Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 | 289 | 453 | 1.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87240|NOT2_SCHPO | General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not2 PE=1 SV=2 | 308 | 457 | 1.0E-31 |
| sp|Q9NZN8|CNOT2_HUMAN | CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1 | 290 | 457 | 2.0E-25 |
| sp|Q8C5L3|CNOT2_MOUSE | CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=1 SV=2 | 290 | 457 | 3.0E-25 |
| sp|Q52JK6|VIP2_NICBE | Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1 | 280 | 457 | 7.0E-24 |
| sp|Q9FPW4|VIP2_ARATH | Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana GN=VIP2 PE=1 SV=2 | 289 | 453 | 1.0E-21 |
| sp|P06100|NOT2_YEAST | General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC36 PE=1 SV=1 | 356 | 453 | 1.0E-18 |
| sp|Q94547|RGA_DROME | Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=1 SV=2 | 292 | 461 | 1.0E-18 |
| sp|Q8K0V4|CNOT3_MOUSE | CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1 | 372 | 457 | 8.0E-10 |
| sp|O75175|CNOT3_HUMAN | CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1 | 372 | 457 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0019222 | regulation of metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.6728 | 0.6614 | 0.0884 | 0.0193 | 0.0466 | 0.006 | 0.0837 | 0.0298 | 0.016 | 0.0294 |
| Orthofinder run ID | 4 |
| Orthogroup | 2479 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3579 MNRPGAVQQTLRGMPGNFGGQPQPQAPGRSVSNRLPNGKLGNNGSGWAFGAGLPMGGAGFQNQAHQLGGNLSFAQ SLSGSQPATPLDLSEFPSLANNSQLAPAGQVSMWSGAGSRNPNGPVQRNQSTPVSSQPSGQDDLFNPASASRMQP NQAANGYMRSEHGANMMSSLGFGPPNTGSAHVQAHRGNGLLNALSANSRANEARSSPGAGAPDSSRAPDAKRPEE MRQRTAMFRDVGFSKPSTGNDGTIQAAGASSQLGAIGNDGSLGKSKDDKASRHPEAVDPLAGMAAVDKWGIKGLR TLMNNYPDFHAMVVGMDPNTLGLDLGSQELISPQIYSLFDEQPPRPTVTSSKFRLPDCYSVTNVQPIESKIQSFN EETLFWIFYSCPADVKQQMAAVELHSRNWRWHKKLQVWLTKDEHMNPQILSPNHERGYYIVWDANNWRKDRREFT LHYGDLDTTLNQGP* |
| Coding | >Hirsu2|3579 ATGAATCGGCCAGGAGCAGTACAGCAGACGCTACGGGGCATGCCTGGCAACTTCGGAGGCCAACCACAGCCCCAA GCGCCGGGAAGATCAGTATCGAATCGGTTACCGAACGGAAAATTAGGCAACAATGGGTCCGGCTGGGCCTTCGGT GCCGGCCTGCCGATGGGAGGTGCCGGCTTTCAAAATCAGGCGCACCAGCTGGGCGGCAACCTCAGTTTCGCACAG AGCTTGAGCGGGTCGCAACCTGCCACGCCGCTGGATCTGTCAGAGTTCCCCTCCCTCGCCAATAACTCGCAGCTG GCTCCGGCCGGTCAAGTGTCGATGTGGTCTGGCGCTGGCTCCCGGAACCCCAACGGTCCCGTCCAGCGCAACCAG TCCACCCCGGTGTCCTCCCAGCCCTCAGGGCAAGACGACCTGTTTAACCCCGCGTCCGCGTCTCGGATGCAGCCA AACCAAGCTGCCAACGGGTACATGCGATCGGAGCACGGCGCCAACATGATGTCATCGTTAGGATTTGGGCCTCCA AACACCGGCTCGGCGCACGTGCAGGCGCACCGAGGAAACGGTTTGCTGAACGCTCTGTCTGCAAACAGCCGGGCC AACGAGGCACGGTCGTCGCCCGGGGCGGGAGCTCCAGATTCGTCGCGAGCACCGGACGCCAAACGGCCCGAGGAA ATGAGGCAGAGGACCGCCATGTTCCGCGACGTTGGCTTCAGCAAGCCTTCCACTGGCAACGACGGGACGATACAA GCAGCCGGCGCCTCGAGTCAACTCGGCGCCATAGGGAATGACGGCTCGCTTGGCAAGTCGAAAGACGACAAGGCC AGCCGCCACCCCGAAGCCGTGGACCCTCTGGCCGGCATGGCAGCAGTAGATAAGTGGGGCATCAAGGGTTTGCGG ACTCTGATGAACAACTACCCTGATTTTCACGCCATGGTGGTAGGCATGGATCCAAACACGCTCGGGCTCGACCTG GGCTCTCAAGAGCTCATCTCTCCGCAAATCTACTCACTCTTTGACGAGCAGCCGCCCAGGCCGACGGTGACGTCG AGCAAGTTCAGACTGCCCGACTGCTACAGCGTCACGAACGTGCAGCCCATCGAGAGCAAGATCCAGAGCTTCAAC GAGGAAACGTTATTCTGGATCTTCTACAGCTGTCCGGCCGACGTCAAGCAACAAATGGCAGCGGTGGAACTGCAC TCGCGGAACTGGCGATGGCACAAGAAGCTGCAAGTCTGGCTGACCAAGGACGAGCACATGAACCCGCAAATCCTG AGCCCGAACCACGAGCGAGGCTACTACATCGTGTGGGACGCCAACAACTGGCGGAAAGACCGAAGAGAATTCACG CTGCACTACGGCGACCTGGACACGACGCTGAATCAAGGGCCCTGA |
| Transcript | >Hirsu2|3579 ATGAATCGGCCAGGAGCAGTACAGCAGACGCTACGGGGCATGCCTGGCAACTTCGGAGGCCAACCACAGCCCCAA GCGCCGGGAAGATCAGTATCGAATCGGTTACCGAACGGAAAATTAGGCAACAATGGGTCCGGCTGGGCCTTCGGT GCCGGCCTGCCGATGGGAGGTGCCGGCTTTCAAAATCAGGCGCACCAGCTGGGCGGCAACCTCAGTTTCGCACAG AGCTTGAGCGGGTCGCAACCTGCCACGCCGCTGGATCTGTCAGAGTTCCCCTCCCTCGCCAATAACTCGCAGCTG GCTCCGGCCGGTCAAGTGTCGATGTGGTCTGGCGCTGGCTCCCGGAACCCCAACGGTCCCGTCCAGCGCAACCAG TCCACCCCGGTGTCCTCCCAGCCCTCAGGGCAAGACGACCTGTTTAACCCCGCGTCCGCGTCTCGGATGCAGCCA AACCAAGCTGCCAACGGGTACATGCGATCGGAGCACGGCGCCAACATGATGTCATCGTTAGGATTTGGGCCTCCA AACACCGGCTCGGCGCACGTGCAGGCGCACCGAGGAAACGGTTTGCTGAACGCTCTGTCTGCAAACAGCCGGGCC AACGAGGCACGGTCGTCGCCCGGGGCGGGAGCTCCAGATTCGTCGCGAGCACCGGACGCCAAACGGCCCGAGGAA ATGAGGCAGAGGACCGCCATGTTCCGCGACGTTGGCTTCAGCAAGCCTTCCACTGGCAACGACGGGACGATACAA GCAGCCGGCGCCTCGAGTCAACTCGGCGCCATAGGGAATGACGGCTCGCTTGGCAAGTCGAAAGACGACAAGGCC AGCCGCCACCCCGAAGCCGTGGACCCTCTGGCCGGCATGGCAGCAGTAGATAAGTGGGGCATCAAGGGTTTGCGG ACTCTGATGAACAACTACCCTGATTTTCACGCCATGGTGGTAGGCATGGATCCAAACACGCTCGGGCTCGACCTG GGCTCTCAAGAGCTCATCTCTCCGCAAATCTACTCACTCTTTGACGAGCAGCCGCCCAGGCCGACGGTGACGTCG AGCAAGTTCAGACTGCCCGACTGCTACAGCGTCACGAACGTGCAGCCCATCGAGAGCAAGATCCAGAGCTTCAAC GAGGAAACGTTATTCTGGATCTTCTACAGCTGTCCGGCCGACGTCAAGCAACAAATGGCAGCGGTGGAACTGCAC TCGCGGAACTGGCGATGGCACAAGAAGCTGCAAGTCTGGCTGACCAAGGACGAGCACATGAACCCGCAAATCCTG AGCCCGAACCACGAGCGAGGCTACTACATCGTGTGGGACGCCAACAACTGGCGGAAAGACCGAAGAGAATTCACG CTGCACTACGGCGACCTGGACACGACGCTGAATCAAGGGCCCTGA |
| Gene | >Hirsu2|3579 ATGAATCGGCCAGGTAGGACAAGCCCCGAGCCCCTTGATTTCCATGCCCGTCTTCAGCCTTGGGCACCCCGCGCC CATATAATCCAGTGGAAGGCGACCAGCACGGCGCACGCGCACGCCCGCGAATCATGACGATGCCGTACGACGACG ACGGTCCCGGCGATTCCACCCCCGCGATCGGCTGCCCGATGCCCGGCCGCCGCCGGCGACGTACCAGACGCGGCT CGCAATTGACGTACGATCCATGCCGGTCCGGCGTGGCGAAGCCCGCGTGCTCCCGGTCCAGGAAGCTCCGGGGCG ACGGCCCTCCGTCCTCGACTCGACACATGCCCCATGATGCCCCCTCATTCCGGTACCCTCGCGGTGGATCACGCT CGAGAATGACGGGAGGCTAACGGGGAACGCAAAGGAGCAGTACAGCAGACGCTACGGGGCATGCCTGGCAACTTC GGAGGCCAACCACAGCCCCAAGCGCCGGGAAGATCAGTATCGAATCGGTTACCGAACGGAAAATTAGGTACGAGG CGGGCGAGAGCGAGCCAACGTAGACAGCTGTCGGGCCTTGGCTGACGGTCCGGCCGGATTGCTGGCACAGGCAAC AATGGGTCCGGCTGGGCCTTCGGTGCCGGCCTGCCGATGGGAGGTGCCGGCTTTCAAAATCAGGCGCACCAGCTG GGCGGCAACCTCAGTTTCGCACAGAGCTTGAGCGGGTCGCAACCTGCCACGCCGCTGGATCTGTCGTACGTACCT GCACTTCCTTTCCCCTTGCACTCTTCTCCTTCACCCTCGCGCCCCTCGCCCTCGCCCTCCCCCGGCCCCTCGCCC AGCAGCAGCAAAGAAGGCCTCACTCGACCATGCCGAAGCGATCACGACTCGCCAGCAAGGCCCGCGCCGGGGCCG AGCCGACCGCCCCTGCCCAGCCATCGCCCGGTTTGGCTTACTCCGCCGTAGTCAAGGGGTACTACGCATGATTTT CCTTGTCCCTGTTTGGCTCTGCCCTCGCTCCCCCGGTGCCGTTCCGTACGACGTGTTGCGACGGGGAGGCCTACT GACTGACTGCCCCGGATAGAGAGTTCCCCTCCCTCGCCAATAACTCGCAGCTGGCTCCGGCCGGTCAAGTGTCGA TGTGGTCTGGCGCTGGCTCCCGGAACCCCAACGGTCCCGTCCAGCGCAACCAGTCCACCCCGGTGTCCTCCCAGC CCTCAGGGCAAGACGACCTGTTTAACCCCGCGTCCGCGTCTCGGATGCAGCCAAACCAAGGTTCGTCCCTCTTCG CCGCAAGACGGAACGCGCCAGCCATCTCTCAGGTCCGACTGAGCAACGTTGACGACCCAGCTCCGCTGAGCAAAG CTGCCAACGGGTACATGCGATCGGAGCACGGCGCCAACATGATGTCATCGTTAGGATTTGGGCCTCCAAACACCG GCTCGGCGCACGTGCAGGCGCACCGAGGAAACGGTTTGCTGAACGCTCTGTCTGCAAACAGCCGGGCCAACGAGG CACGGTCGTCGCCCGGGGCGGGAGCTCCAGGTAGTCTCGACCGCGGCGAAATCACTGCAGCGCATGCTGACTCGA GCCAGATTCGTCGCGAGCACCGGACGCCAAACGGCCCGAGGAAATGAGGCAGAGGACCGCCATGTTCCGCGACGT TGGCTTCAGCAAGCCTTCCACTGGCAACGACGGGACGATACAAGCAGCCGGCGCCTCGAGTCAACTCGGCGCCAT AGGGAATGACGGCTCGCTTGGCAAGTCGAAAGACGACAAGGCCAGCCGCCACCCCGAAGCCGTGGACCCTCTGGC CGGCATGGCAGCAGTAGATAAGTGGGGCATCAAGGGTTTGCGGACTCTGATGAACAACTACCCTGATTTTCACGC CATGGTGGTAGGCATGGATCCAAACACGCTCGGGCTCGACCTGGGCTCTCAAGAGTAAGGCGTTCCCCGGCACGG CGCGTGAGCGATGGAGGACGATGACACTGACACGCTGCAGGCTCATCTCTCCGCAAATCTACTCACTCTTTGACG AGCAGCCGCCCAGGCCGACGGTGACGTCGAGCAAGTTCAGACTGCCCGACTGCTACAGCGTCACGAACGTGCAGC CCATCGAGAGCAAGATCCAGAGCTTCAACGAGGAAACGTTATTCTGGATCTTCTACAGCTGTCCGGCCGACGTCA AGCAACAAATGGCAGCGGTGGAACTGTGAGCCCTCTCCTCATGTCGACAACCACCCACGCGCGCGGGCATCCTGC TAACATGGAGACTCGCGTAGGCACTCGCGGAACTGGCGATGGCACAAGAAGCTGCAAGTCTGGCTGACCAAGGAC GAGCACATGAACCCGCAAATCCTGAGCCCGAACCACGAGCGAGGCTACTACATCGTGTGGGACGCCAACAACTGG CGGAAAGACCGAGTACGAGCCCAAGAACTGTCCTCCCTTCTACCCCCCTTGACGATGGCACTGGAACTGACTGCT GCGCCTCCGCAGAGAGAATTCACGCTGCACTACGGCGACCTGGACACGACGCTGAATCAAGGGCCCTGA |