Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3578
Gene name
LocationContig_195:15707..16337
Strand-
Gene length (bp)630
Transcript length (bp)561
Coding sequence length (bp)561
Protein length (aa) 187

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02845 CUE CUE domain 3.8E-10 46 86

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6BKU8|CUE1_DEBHA Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CUE1 PE=3 SV=1 50 183 4.0E-11
sp|Q59NY7|CUE1_CANAL Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CUE1 PE=3 SV=2 47 181 3.0E-06

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 33 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3578
MANDQISLPYLAVILVMSGLIIRYLFFSAAPAQRPATSPEALQRSREAAVERIQQMFPQAERRSILWDLQRNGGN
IQSTTERILAGRLDTPPVTFQPPPAPAQPAPSASAASATRPAEKSSQPDLITRYNLKGKLDSPAADETGGRGWSS
NREERQSSLQRRRDEMILAARRKMEAKMAAEKAKEG*
Coding >Hirsu2|3578
ATGGCCAACGACCAGATCTCGCTGCCGTACCTGGCGGTCATCTTGGTCATGTCGGGGCTCATAATCCGATACCTG
TTCTTCTCAGCAGCCCCGGCGCAGAGACCCGCAACATCACCGGAGGCGCTGCAGCGGTCGAGGGAGGCGGCCGTG
GAGCGGATCCAGCAAATGTTCCCTCAAGCCGAGAGAAGAAGTATTCTGTGGGATCTGCAGCGCAACGGAGGAAAC
ATCCAGAGTACGACAGAACGGATCCTCGCCGGTCGACTGGACACGCCCCCCGTCACCTTCCAACCGCCGCCGGCC
CCGGCCCAACCAGCGCCAAGCGCGAGTGCTGCGTCGGCAACGAGGCCGGCTGAGAAATCGTCGCAGCCGGATCTG
ATCACGCGTTACAACCTCAAGGGCAAGCTGGACTCGCCAGCTGCGGACGAGACGGGCGGCAGGGGGTGGAGCTCG
AACCGGGAAGAGCGACAATCGTCGCTGCAACGGAGGCGCGACGAGATGATACTGGCGGCGCGGCGGAAGATGGAG
GCCAAAATGGCGGCCGAGAAAGCGAAGGAAGGGTAG
Transcript >Hirsu2|3578
ATGGCCAACGACCAGATCTCGCTGCCGTACCTGGCGGTCATCTTGGTCATGTCGGGGCTCATAATCCGATACCTG
TTCTTCTCAGCAGCCCCGGCGCAGAGACCCGCAACATCACCGGAGGCGCTGCAGCGGTCGAGGGAGGCGGCCGTG
GAGCGGATCCAGCAAATGTTCCCTCAAGCCGAGAGAAGAAGTATTCTGTGGGATCTGCAGCGCAACGGAGGAAAC
ATCCAGAGTACGACAGAACGGATCCTCGCCGGTCGACTGGACACGCCCCCCGTCACCTTCCAACCGCCGCCGGCC
CCGGCCCAACCAGCGCCAAGCGCGAGTGCTGCGTCGGCAACGAGGCCGGCTGAGAAATCGTCGCAGCCGGATCTG
ATCACGCGTTACAACCTCAAGGGCAAGCTGGACTCGCCAGCTGCGGACGAGACGGGCGGCAGGGGGTGGAGCTCG
AACCGGGAAGAGCGACAATCGTCGCTGCAACGGAGGCGCGACGAGATGATACTGGCGGCGCGGCGGAAGATGGAG
GCCAAAATGGCGGCCGAGAAAGCGAAGGAAGGGTAG
Gene >Hirsu2|3578
ATGGCCAACGACCAGATCTCGCTGCCGTACCTGGCGGTCATCTTGGTCATGTCGGGGCTCATAATCCGATACCTG
TTCTTCTCAGCAGCCCCGGCGCAGAGACCCGCAACATCACCGGAGGCGCTGCAGCGGTCGAGGGAGGCGGCCGTG
GAGCGGATCCAGCAAATGTTCCCTCAAGCCGAGAGAAGAAGTATTCTGTGGGATCTGCAGCGCAACGGAGGAAAC
ATCCAGAGTACGACAGAACGGATCCTCGCCGGTCGACTGGACACGGTAGGGGACCCTCGCACCCGAATGCCATCC
CGCTGCGCCGGAACGGACACTACTGACGTGAGGAACTAGCCCCCCGTCACCTTCCAACCGCCGCCGGCCCCGGCC
CAACCAGCGCCAAGCGCGAGTGCTGCGTCGGCAACGAGGCCGGCTGAGAAATCGTCGCAGCCGGATCTGATCACG
CGTTACAACCTCAAGGGCAAGCTGGACTCGCCAGCTGCGGACGAGACGGGCGGCAGGGGGTGGAGCTCGAACCGG
GAAGAGCGACAATCGTCGCTGCAACGGAGGCGCGACGAGATGATACTGGCGGCGCGGCGGAAGATGGAGGCCAAA
ATGGCGGCCGAGAAAGCGAAGGAAGGGTAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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