Protein ID | Hirsu2|3574 |
Gene name | |
Location | Contig_195:46..1080 |
Strand | - |
Gene length (bp) | 1034 |
Transcript length (bp) | 942 |
Coding sequence length (bp) | 942 |
Protein length (aa) | 314 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03398 | Ist1 | Regulator of Vps4 activity in the MVB pathway | 5.7E-59 | 12 | 173 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q3ZBV1|IST1_BOVIN | IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1 | 10 | 196 | 6.0E-37 |
sp|P53990|IST1_HUMAN | IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1 | 10 | 196 | 9.0E-37 |
sp|Q568Z6|IST1_RAT | IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1 | 10 | 196 | 1.0E-35 |
sp|Q5R6G8|IST1_PONAB | IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1 | 10 | 196 | 1.0E-35 |
sp|Q9CX00|IST1_MOUSE | IST1 homolog OS=Mus musculus GN=Ist1 PE=1 SV=1 | 10 | 196 | 1.0E-35 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q3ZBV1|IST1_BOVIN | IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1 | 10 | 196 | 6.0E-37 |
sp|P53990|IST1_HUMAN | IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1 | 10 | 196 | 9.0E-37 |
sp|Q568Z6|IST1_RAT | IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1 | 10 | 196 | 1.0E-35 |
sp|Q5R6G8|IST1_PONAB | IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1 | 10 | 196 | 1.0E-35 |
sp|Q9CX00|IST1_MOUSE | IST1 homolog OS=Mus musculus GN=Ist1 PE=1 SV=1 | 10 | 196 | 1.0E-35 |
sp|P53843|IST1_YEAST | Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1 SV=1 | 1 | 174 | 9.0E-28 |
sp|Q54I39|IST1L_DICDI | IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1 | 10 | 189 | 2.0E-27 |
sp|O74490|IST1_SCHPO | Vacuolar protein sorting-associated protein ist1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ist1 PE=3 SV=1 | 8 | 183 | 3.0E-21 |
GO Term | Description | Terminal node |
---|---|---|
GO:0015031 | protein transport | Yes |
GO:0033036 | macromolecule localization | No |
GO:0008104 | protein localization | No |
GO:0051641 | cellular localization | No |
GO:0009987 | cellular process | No |
GO:0070727 | cellular macromolecule localization | No |
GO:0051179 | localization | No |
GO:0071702 | organic substance transport | No |
GO:0071705 | nitrogen compound transport | No |
GO:0008150 | biological_process | No |
GO:0051234 | establishment of localization | No |
GO:0045184 | establishment of protein localization | No |
GO:0006810 | transport | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal | 0.721 | 0.486 | 0.0904 | 0.0471 | 0.1741 | 0.0014 | 0.1176 | 0.1571 | 0.195 | 0.1611 |
Orthofinder run ID | 4 |
Orthogroup | 2475 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3574 MAPQATLVTRLKVQLKLAIARLRMVQQRDEQLGKTHRRAMAQLLEAGKVDSATIRVENIIRADITTELHEMLELY CELLLARAGLLEGAGCDPGLEEAVKSIMYAAPKTEIKELGTVRLLLAEKYGKEFAMQAMDNADGKVNHKVVRKLS VEPPRLELVQGYLEEISKAYGVDWPKRSVKSTPPPPDLLDDGGDDDDDDDDDNNPSGAQAQKALQEPMAVAAATR KLSSRGDEEQELGRATPPKGLGGPASPLTVTPPRMTTDNVHPRVTLGSMELKPNAKTEAAPTPKARGPEGTVPDI NDLERRFAALKKR* |
Coding | >Hirsu2|3574 ATGGCTCCGCAGGCGACGCTCGTGACTCGGCTCAAGGTGCAGCTCAAGCTGGCCATCGCCCGGCTGCGGATGGTG CAGCAGCGCGACGAGCAGCTGGGCAAGACGCACCGGCGGGCCATGGCGCAGCTGCTGGAGGCGGGCAAGGTGGAC TCGGCGACGATCCGAGTCGAGAACATCATCCGGGCCGACATCACGACCGAGCTGCACGAGATGCTTGAGCTGTAC TGCGAGCTGCTGCTGGCCCGGGCCGGCCTGCTCGAGGGCGCCGGTTGCGACCCGGGCCTGGAGGAGGCCGTCAAG AGCATCATGTACGCGGCGCCCAAGACGGAGATCAAGGAGCTCGGCACCGTGCGCCTGCTGCTGGCCGAGAAGTAC GGCAAAGAGTTCGCCATGCAGGCCATGGACAACGCCGACGGCAAGGTCAACCACAAGGTCGTACGCAAGCTGAGC GTCGAGCCGCCCCGCCTTGAGCTGGTCCAGGGCTACCTGGAGGAAATCTCCAAGGCCTACGGCGTCGACTGGCCG AAGCGAAGCGTTAAGTCGACCCCGCCGCCGCCCGACCTCCTGGACGACGGCGGCGATGACGACGACGACGACGAC GACGACAACAATCCGTCGGGTGCCCAGGCCCAGAAGGCGCTGCAGGAGCCCATGGCCGTCGCCGCCGCGACGAGA AAGCTGTCGTCCCGAGGCGACGAGGAGCAGGAGCTGGGCCGCGCCACGCCGCCCAAGGGGCTCGGCGGCCCGGCC AGCCCGCTGACGGTGACGCCGCCGCGGATGACGACGGACAACGTCCACCCGCGCGTCACCCTCGGTTCCATGGAG CTCAAGCCGAACGCGAAGACGGAGGCGGCGCCGACGCCCAAGGCGAGAGGGCCGGAAGGCACGGTGCCGGACATC AACGACCTGGAGCGGCGCTTTGCCGCCCTCAAAAAACGGTGA |
Transcript | >Hirsu2|3574 ATGGCTCCGCAGGCGACGCTCGTGACTCGGCTCAAGGTGCAGCTCAAGCTGGCCATCGCCCGGCTGCGGATGGTG CAGCAGCGCGACGAGCAGCTGGGCAAGACGCACCGGCGGGCCATGGCGCAGCTGCTGGAGGCGGGCAAGGTGGAC TCGGCGACGATCCGAGTCGAGAACATCATCCGGGCCGACATCACGACCGAGCTGCACGAGATGCTTGAGCTGTAC TGCGAGCTGCTGCTGGCCCGGGCCGGCCTGCTCGAGGGCGCCGGTTGCGACCCGGGCCTGGAGGAGGCCGTCAAG AGCATCATGTACGCGGCGCCCAAGACGGAGATCAAGGAGCTCGGCACCGTGCGCCTGCTGCTGGCCGAGAAGTAC GGCAAAGAGTTCGCCATGCAGGCCATGGACAACGCCGACGGCAAGGTCAACCACAAGGTCGTACGCAAGCTGAGC GTCGAGCCGCCCCGCCTTGAGCTGGTCCAGGGCTACCTGGAGGAAATCTCCAAGGCCTACGGCGTCGACTGGCCG AAGCGAAGCGTTAAGTCGACCCCGCCGCCGCCCGACCTCCTGGACGACGGCGGCGATGACGACGACGACGACGAC GACGACAACAATCCGTCGGGTGCCCAGGCCCAGAAGGCGCTGCAGGAGCCCATGGCCGTCGCCGCCGCGACGAGA AAGCTGTCGTCCCGAGGCGACGAGGAGCAGGAGCTGGGCCGCGCCACGCCGCCCAAGGGGCTCGGCGGCCCGGCC AGCCCGCTGACGGTGACGCCGCCGCGGATGACGACGGACAACGTCCACCCGCGCGTCACCCTCGGTTCCATGGAG CTCAAGCCGAACGCGAAGACGGAGGCGGCGCCGACGCCCAAGGCGAGAGGGCCGGAAGGCACGGTGCCGGACATC AACGACCTGGAGCGGCGCTTTGCCGCCCTCAAAAAACGGTGA |
Gene | >Hirsu2|3574 ATGGCTCCGCAGGCGACGCTCGTGGTATGCCGCCCCTGTCCCTCTTCCTCCGCCTCTCCCTCCGGGCCGACGGTG ACGCGACAGCGGCTGACACAAGGGCGCGCGCCGGCGGGCAGACTCGGCTCAAGGTGCAGCTCAAGCTGGCCATCG CCCGGCTGCGGATGGTGCAGCAGCGCGACGAGCAGCTGGGCAAGACGCACCGGCGGGCCATGGCGCAGCTGCTGG AGGCGGGCAAGGTGGACTCGGCGACGATCCGAGTCGAGAACATCATCCGGGCCGACATCACGACCGAGCTGCACG AGATGCTTGAGCTGTACTGCGAGCTGCTGCTGGCCCGGGCCGGCCTGCTCGAGGGCGCCGGTTGCGACCCGGGCC TGGAGGAGGCCGTCAAGAGCATCATGTACGCGGCGCCCAAGACGGAGATCAAGGAGCTCGGCACCGTGCGCCTGC TGCTGGCCGAGAAGTACGGCAAAGAGTTCGCCATGCAGGCCATGGACAACGCCGACGGCAAGGTCAACCACAAGG TCGTACGCAAGCTGAGCGTCGAGCCGCCCCGCCTTGAGCTGGTCCAGGGCTACCTGGAGGAAATCTCCAAGGCCT ACGGCGTCGACTGGCCGAAGCGAAGCGTTAAGTCGACCCCGCCGCCGCCCGACCTCCTGGACGACGGCGGCGATG ACGACGACGACGACGACGACGACAACAATCCGTCGGGTGCCCAGGCCCAGAAGGCGCTGCAGGAGCCCATGGCCG TCGCCGCCGCGACGAGAAAGCTGTCGTCCCGAGGCGACGAGGAGCAGGAGCTGGGCCGCGCCACGCCGCCCAAGG GGCTCGGCGGCCCGGCCAGCCCGCTGACGGTGACGCCGCCGCGGATGACGACGGACAACGTCCACCCGCGCGTCA CCCTCGGTTCCATGGAGCTCAAGCCGAACGCGAAGACGGAGGCGGCGCCGACGCCCAAGGCGAGAGGGCCGGAAG GCACGGTGCCGGACATCAACGACCTGGAGCGGCGCTTTGCCGCCCTCAAAAAACGGTGA |