© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3565 |
| Gene name | |
| Location | Contig_1942:1959..3837 |
| Strand | - |
| Gene length (bp) | 1878 |
| Transcript length (bp) | 1878 |
| Coding sequence length (bp) | 1878 |
| Protein length (aa) | 626 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05327 | RRN3 | RNA polymerase I specific transcription initiation factor RRN3 | 4.0E-171 | 4 | 585 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10110|RRN3_SCHPO | RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrn3 PE=3 SV=1 | 8 | 587 | 7.0E-68 |
| sp|B2RS91|RRN3_MOUSE | RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1 | 67 | 582 | 5.0E-51 |
| sp|Q9NYV6|RRN3_HUMAN | RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1 | 46 | 582 | 7.0E-48 |
| sp|Q5R4N9|RRN3_PONAB | RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1 | 34 | 582 | 2.0E-46 |
| sp|P36070|RRN3_YEAST | RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRN3 PE=1 SV=1 | 148 | 597 | 5.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10110|RRN3_SCHPO | RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrn3 PE=3 SV=1 | 8 | 587 | 7.0E-68 |
| sp|B2RS91|RRN3_MOUSE | RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1 | 67 | 582 | 5.0E-51 |
| sp|Q9NYV6|RRN3_HUMAN | RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1 | 46 | 582 | 7.0E-48 |
| sp|Q5R4N9|RRN3_PONAB | RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1 | 34 | 582 | 2.0E-46 |
| sp|P36070|RRN3_YEAST | RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRN3 PE=1 SV=1 | 148 | 597 | 5.0E-36 |
| sp|P48322|YPJ1_CAEEL | Uncharacterized protein C36E8.1 OS=Caenorhabditis elegans GN=C36E8.1 PE=3 SV=1 | 76 | 453 | 7.0E-11 |
| sp|Q2M238|RN3P1_HUMAN | Putative RRN3-like protein RRN3P1 OS=Homo sapiens GN=RRN3P1 PE=5 SV=1 | 355 | 506 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0001181 | RNA polymerase I general transcription initiation factor activity | Yes |
| GO:0006361 | transcription initiation from RNA polymerase I promoter | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006352 | DNA-templated transcription, initiation | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0140223 | general transcription initiation factor activity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5068 | 0.7449 | 0.1064 | 0.0325 | 0.0662 | 0.0034 | 0.0947 | 0.1292 | 0.1164 | 0.0171 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 92 | 114 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2472 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3565 MADVKLEVRLALEEHLRGNDGQYDSLKELFANDKQRYLPPVVGEDDDTLKPHELQVYVMALTSCIPMLKDKECNG LVRTVLRCSWLGRDDAFVRVFTHFLAALVSAQGSYLVAVLSMMVDKFRLTRPSSWSVPDFPEIGRDAMRERLHSS LQYLLQMFPAAAAVLENLLSAKFPFLDESMRTHMAYVRNLVQVKAYVPELRDEILDLILDRLVKMDSQMQVDLED LDDDVTAAVMYALRDGRRRGLDWEEEEEGDGDGSDSGQDSDNESADSDEQDYDQEAMRVKTVKENVEKMDAVLDT LFGLYAPHFAQPGSDRAFDMFTVLLREFEQMVLPTYKSRHTQFLIFHFAQRHERLTDAFCGQLMAAAFQGSRPNV LKQAAAAYLASFVARGAQVPGSLVRTMFLLLLHHLEQYRRRFEPLCRGPDLKRFHPYYSLVQATLYIFCFRWREL VASAPEAVDPDDAATYVGQELEWIGACQRELSVQLFGKLNPLKVCAPVIVDEFARLAHRLGFLYVYPLVESNKRI RLSQFLSSTYATGGALRDAGYEAQSESFHQLDPYFPFDPYQLPVSKRWLEGDYVHWESVPGLNAGEDDDSDDTGE AGGDDEDEEDQDKLEEETATDSDGA* |
| Coding | >Hirsu2|3565 ATGGCCGACGTCAAGCTGGAGGTGCGGCTGGCGCTGGAGGAGCACCTGCGGGGAAACGACGGGCAGTACGACTCG CTCAAGGAGCTGTTCGCCAACGACAAGCAGAGATACCTGCCGCCGGTGGTGGGCGAGGACGACGACACGCTCAAG CCGCACGAGCTCCAGGTGTACGTCATGGCGCTGACGAGCTGCATCCCGATGCTCAAGGACAAGGAGTGCAACGGG CTGGTGCGGACGGTGCTGCGCTGCTCTTGGCTGGGGCGCGACGACGCCTTCGTCCGGGTTTTCACCCACTTTTTG GCGGCGCTGGTGAGCGCGCAGGGCTCGTACCTGGTGGCGGTCCTGTCGATGATGGTGGACAAGTTCCGGCTCACG CGGCCGTCGTCGTGGTCGGTGCCCGACTTCCCCGAGATCGGGCGCGACGCGATGCGCGAGCGGCTCCACTCGTCG CTGCAGTACCTGCTGCAAATGTTCCCGGCGGCGGCGGCGGTGCTGGAGAACCTGCTGAGCGCCAAGTTCCCCTTC CTGGACGAGTCGATGAGGACGCACATGGCGTACGTGCGGAACCTGGTGCAGGTCAAGGCGTACGTGCCGGAGCTG CGGGACGAGATCCTGGACCTGATCCTGGACCGGCTCGTCAAGATGGACTCGCAGATGCAGGTGGACCTGGAGGAC CTGGACGACGACGTGACGGCGGCCGTTATGTACGCGCTGCGCGACGGCCGGCGGCGCGGGCTGGACTGGGAGGAG GAGGAGGAGGGGGACGGGGACGGGTCGGACTCGGGCCAGGACAGCGACAACGAGTCGGCCGACAGCGACGAGCAG GACTACGACCAGGAGGCGATGCGGGTCAAGACGGTCAAGGAGAACGTGGAGAAGATGGACGCGGTGCTGGACACG CTCTTCGGCCTGTACGCGCCGCACTTTGCGCAGCCGGGGTCGGACCGGGCGTTCGACATGTTCACGGTGCTGCTG CGCGAGTTCGAGCAGATGGTGCTGCCGACGTACAAGTCGCGGCACACGCAGTTCCTCATCTTCCACTTCGCGCAG CGGCACGAGCGGCTCACGGACGCCTTCTGCGGGCAGCTGATGGCGGCGGCCTTCCAGGGCAGCCGGCCCAACGTG CTGAAGCAGGCGGCGGCGGCGTACCTGGCCAGCTTCGTGGCGCGGGGCGCGCAGGTGCCGGGCAGCCTGGTGCGG ACCATGTTCCTGCTGCTGCTGCACCACCTGGAGCAGTACCGGCGGCGGTTCGAGCCGCTGTGCCGCGGGCCGGAC CTCAAGCGCTTCCACCCGTACTACTCGCTCGTGCAGGCGACGCTGTACATCTTCTGCTTCCGGTGGCGGGAGCTG GTGGCGTCGGCGCCGGAGGCGGTGGACCCGGACGACGCGGCGACGTACGTCGGCCAGGAGCTGGAGTGGATCGGG GCGTGCCAGCGCGAGCTGTCGGTGCAGCTGTTCGGCAAGCTGAACCCGCTCAAGGTGTGCGCGCCGGTCATCGTG GACGAGTTCGCCAGGCTGGCGCACCGGCTCGGCTTCCTGTACGTCTACCCGCTGGTGGAGAGCAACAAGCGGATC CGGCTGAGCCAGTTCCTGTCGTCGACGTACGCGACGGGCGGCGCGCTGCGCGACGCGGGCTACGAGGCGCAGAGC GAGAGCTTCCACCAGCTGGACCCGTACTTCCCCTTCGACCCGTACCAGCTGCCGGTCAGCAAGCGGTGGCTGGAG GGCGACTACGTGCACTGGGAGTCGGTGCCGGGGCTCAACGCCGGCGAGGACGATGACAGCGACGACACGGGCGAG GCGGGCGGCGACGACGAGGACGAAGAGGACCAGGACAAGCTCGAGGAAGAGACGGCGACGGACAGCGACGGGGCG TGA |
| Transcript | >Hirsu2|3565 ATGGCCGACGTCAAGCTGGAGGTGCGGCTGGCGCTGGAGGAGCACCTGCGGGGAAACGACGGGCAGTACGACTCG CTCAAGGAGCTGTTCGCCAACGACAAGCAGAGATACCTGCCGCCGGTGGTGGGCGAGGACGACGACACGCTCAAG CCGCACGAGCTCCAGGTGTACGTCATGGCGCTGACGAGCTGCATCCCGATGCTCAAGGACAAGGAGTGCAACGGG CTGGTGCGGACGGTGCTGCGCTGCTCTTGGCTGGGGCGCGACGACGCCTTCGTCCGGGTTTTCACCCACTTTTTG GCGGCGCTGGTGAGCGCGCAGGGCTCGTACCTGGTGGCGGTCCTGTCGATGATGGTGGACAAGTTCCGGCTCACG CGGCCGTCGTCGTGGTCGGTGCCCGACTTCCCCGAGATCGGGCGCGACGCGATGCGCGAGCGGCTCCACTCGTCG CTGCAGTACCTGCTGCAAATGTTCCCGGCGGCGGCGGCGGTGCTGGAGAACCTGCTGAGCGCCAAGTTCCCCTTC CTGGACGAGTCGATGAGGACGCACATGGCGTACGTGCGGAACCTGGTGCAGGTCAAGGCGTACGTGCCGGAGCTG CGGGACGAGATCCTGGACCTGATCCTGGACCGGCTCGTCAAGATGGACTCGCAGATGCAGGTGGACCTGGAGGAC CTGGACGACGACGTGACGGCGGCCGTTATGTACGCGCTGCGCGACGGCCGGCGGCGCGGGCTGGACTGGGAGGAG GAGGAGGAGGGGGACGGGGACGGGTCGGACTCGGGCCAGGACAGCGACAACGAGTCGGCCGACAGCGACGAGCAG GACTACGACCAGGAGGCGATGCGGGTCAAGACGGTCAAGGAGAACGTGGAGAAGATGGACGCGGTGCTGGACACG CTCTTCGGCCTGTACGCGCCGCACTTTGCGCAGCCGGGGTCGGACCGGGCGTTCGACATGTTCACGGTGCTGCTG CGCGAGTTCGAGCAGATGGTGCTGCCGACGTACAAGTCGCGGCACACGCAGTTCCTCATCTTCCACTTCGCGCAG CGGCACGAGCGGCTCACGGACGCCTTCTGCGGGCAGCTGATGGCGGCGGCCTTCCAGGGCAGCCGGCCCAACGTG CTGAAGCAGGCGGCGGCGGCGTACCTGGCCAGCTTCGTGGCGCGGGGCGCGCAGGTGCCGGGCAGCCTGGTGCGG ACCATGTTCCTGCTGCTGCTGCACCACCTGGAGCAGTACCGGCGGCGGTTCGAGCCGCTGTGCCGCGGGCCGGAC CTCAAGCGCTTCCACCCGTACTACTCGCTCGTGCAGGCGACGCTGTACATCTTCTGCTTCCGGTGGCGGGAGCTG GTGGCGTCGGCGCCGGAGGCGGTGGACCCGGACGACGCGGCGACGTACGTCGGCCAGGAGCTGGAGTGGATCGGG GCGTGCCAGCGCGAGCTGTCGGTGCAGCTGTTCGGCAAGCTGAACCCGCTCAAGGTGTGCGCGCCGGTCATCGTG GACGAGTTCGCCAGGCTGGCGCACCGGCTCGGCTTCCTGTACGTCTACCCGCTGGTGGAGAGCAACAAGCGGATC CGGCTGAGCCAGTTCCTGTCGTCGACGTACGCGACGGGCGGCGCGCTGCGCGACGCGGGCTACGAGGCGCAGAGC GAGAGCTTCCACCAGCTGGACCCGTACTTCCCCTTCGACCCGTACCAGCTGCCGGTCAGCAAGCGGTGGCTGGAG GGCGACTACGTGCACTGGGAGTCGGTGCCGGGGCTCAACGCCGGCGAGGACGATGACAGCGACGACACGGGCGAG GCGGGCGGCGACGACGAGGACGAAGAGGACCAGGACAAGCTCGAGGAAGAGACGGCGACGGACAGCGACGGGGCG TGA |
| Gene | >Hirsu2|3565 ATGGCCGACGTCAAGCTGGAGGTGCGGCTGGCGCTGGAGGAGCACCTGCGGGGAAACGACGGGCAGTACGACTCG CTCAAGGAGCTGTTCGCCAACGACAAGCAGAGATACCTGCCGCCGGTGGTGGGCGAGGACGACGACACGCTCAAG CCGCACGAGCTCCAGGTGTACGTCATGGCGCTGACGAGCTGCATCCCGATGCTCAAGGACAAGGAGTGCAACGGG CTGGTGCGGACGGTGCTGCGCTGCTCTTGGCTGGGGCGCGACGACGCCTTCGTCCGGGTTTTCACCCACTTTTTG GCGGCGCTGGTGAGCGCGCAGGGCTCGTACCTGGTGGCGGTCCTGTCGATGATGGTGGACAAGTTCCGGCTCACG CGGCCGTCGTCGTGGTCGGTGCCCGACTTCCCCGAGATCGGGCGCGACGCGATGCGCGAGCGGCTCCACTCGTCG CTGCAGTACCTGCTGCAAATGTTCCCGGCGGCGGCGGCGGTGCTGGAGAACCTGCTGAGCGCCAAGTTCCCCTTC CTGGACGAGTCGATGAGGACGCACATGGCGTACGTGCGGAACCTGGTGCAGGTCAAGGCGTACGTGCCGGAGCTG CGGGACGAGATCCTGGACCTGATCCTGGACCGGCTCGTCAAGATGGACTCGCAGATGCAGGTGGACCTGGAGGAC CTGGACGACGACGTGACGGCGGCCGTTATGTACGCGCTGCGCGACGGCCGGCGGCGCGGGCTGGACTGGGAGGAG GAGGAGGAGGGGGACGGGGACGGGTCGGACTCGGGCCAGGACAGCGACAACGAGTCGGCCGACAGCGACGAGCAG GACTACGACCAGGAGGCGATGCGGGTCAAGACGGTCAAGGAGAACGTGGAGAAGATGGACGCGGTGCTGGACACG CTCTTCGGCCTGTACGCGCCGCACTTTGCGCAGCCGGGGTCGGACCGGGCGTTCGACATGTTCACGGTGCTGCTG CGCGAGTTCGAGCAGATGGTGCTGCCGACGTACAAGTCGCGGCACACGCAGTTCCTCATCTTCCACTTCGCGCAG CGGCACGAGCGGCTCACGGACGCCTTCTGCGGGCAGCTGATGGCGGCGGCCTTCCAGGGCAGCCGGCCCAACGTG CTGAAGCAGGCGGCGGCGGCGTACCTGGCCAGCTTCGTGGCGCGGGGCGCGCAGGTGCCGGGCAGCCTGGTGCGG ACCATGTTCCTGCTGCTGCTGCACCACCTGGAGCAGTACCGGCGGCGGTTCGAGCCGCTGTGCCGCGGGCCGGAC CTCAAGCGCTTCCACCCGTACTACTCGCTCGTGCAGGCGACGCTGTACATCTTCTGCTTCCGGTGGCGGGAGCTG GTGGCGTCGGCGCCGGAGGCGGTGGACCCGGACGACGCGGCGACGTACGTCGGCCAGGAGCTGGAGTGGATCGGG GCGTGCCAGCGCGAGCTGTCGGTGCAGCTGTTCGGCAAGCTGAACCCGCTCAAGGTGTGCGCGCCGGTCATCGTG GACGAGTTCGCCAGGCTGGCGCACCGGCTCGGCTTCCTGTACGTCTACCCGCTGGTGGAGAGCAACAAGCGGATC CGGCTGAGCCAGTTCCTGTCGTCGACGTACGCGACGGGCGGCGCGCTGCGCGACGCGGGCTACGAGGCGCAGAGC GAGAGCTTCCACCAGCTGGACCCGTACTTCCCCTTCGACCCGTACCAGCTGCCGGTCAGCAAGCGGTGGCTGGAG GGCGACTACGTGCACTGGGAGTCGGTGCCGGGGCTCAACGCCGGCGAGGACGATGACAGCGACGACACGGGCGAG GCGGGCGGCGACGACGAGGACGAAGAGGACCAGGACAAGCTCGAGGAAGAGACGGCGACGGACAGCGACGGGGCG TGA |