© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3563 |
| Gene name | |
| Location | Contig_1940:746..3268 |
| Strand | - |
| Gene length (bp) | 2522 |
| Transcript length (bp) | 1785 |
| Coding sequence length (bp) | 1785 |
| Protein length (aa) | 595 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 1.9E-21 | 209 | 361 |
| PF01699 | Na_Ca_ex | Sodium/calcium exchanger protein | 3.4E-23 | 442 | 584 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 175 | 592 | 3.0E-101 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 148 | 589 | 1.0E-81 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 156 | 589 | 1.0E-79 |
| sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 159 | 585 | 7.0E-79 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 191 | 588 | 5.0E-77 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99385|VCX1_YEAST | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 | 175 | 592 | 3.0E-101 |
| sp|Q8L783|CAX5_ARATH | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 | 148 | 589 | 1.0E-81 |
| sp|Q39254|CAX2_ARATH | Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 | 156 | 589 | 1.0E-79 |
| sp|Q39253|CAX1_ARATH | Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 | 159 | 585 | 7.0E-79 |
| sp|Q75XW3|CAX_APHHA | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 | 191 | 588 | 5.0E-77 |
| sp|Q5TKG3|CAX1B_ORYSJ | Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 | 194 | 585 | 2.0E-74 |
| sp|Q93Z81|CAX3_ARATH | Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 | 156 | 585 | 1.0E-73 |
| sp|Q9LFZ8|CAX6_ARATH | Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 | 165 | 589 | 3.0E-73 |
| sp|Q5KQN0|CAX2_ORYSJ | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 | 175 | 594 | 9.0E-71 |
| sp|P74072|CAX_SYNY3 | Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 | 190 | 588 | 8.0E-69 |
| sp|Q769E5|CAX1A_ORYSJ | Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 | 167 | 585 | 1.0E-68 |
| sp|Q6YXZ1|CAX4_ORYSJ | Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 | 179 | 593 | 5.0E-64 |
| sp|O59768|VCX1_SCHPO | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 | 180 | 589 | 9.0E-56 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 174 | 376 | 3.0E-35 |
| sp|Q6K1C4|CAX3_ORYSJ | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 | 441 | 589 | 3.0E-33 |
| sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 425 | 593 | 3.0E-32 |
| sp|Q9P7B3|YI14_SCHPO | Putative cation exchanger C521.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC521.04c PE=1 SV=1 | 207 | 579 | 1.0E-28 |
| sp|Q945S5|CAX4_ARATH | Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 | 177 | 361 | 2.0E-28 |
| sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 211 | 373 | 3.0E-27 |
| sp|P42839|VNX1_YEAST | Low affinity vacuolar monovalent cation/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VNX1 PE=1 SV=1 | 210 | 587 | 2.0E-25 |
| sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 438 | 585 | 2.0E-25 |
| sp|Q5KTQ9|CAX1C_ORYSJ | Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 | 176 | 369 | 3.0E-22 |
| sp|O34840|CHAA_BACSU | Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 | 440 | 585 | 2.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Transmembrane domain | 0.2433 | 0.0992 | 0.1863 | 0.6049 | 0.2837 | 0.0124 | 0.2519 | 0.5243 | 0.238 | 0.0176 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 183 | 205 | 22 |
| 2 | 209 | 228 | 19 |
| 3 | 241 | 263 | 22 |
| 4 | 273 | 295 | 22 |
| 5 | 302 | 324 | 22 |
| 6 | 339 | 361 | 22 |
| 7 | 438 | 460 | 22 |
| 8 | 470 | 489 | 19 |
| 9 | 506 | 528 | 22 |
| 10 | 543 | 561 | 18 |
| 11 | 566 | 588 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 1107 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3563 MSTLNHFRNRRQAHRFSRASAEQSWNPFRHVAWGPGRHADTWSPGRLEDQREEAEGARAGRADRLTHAATDPVPV RADSSNAMPGPFKADEAFTQSARKRDSDDKTSSNPSVDTETAGLRNRRPDDETAKSGAAAARPMAPAAAAAADRE CDADDEKGRKSRFFRHVQPKSPFTAANQLQRTFLNSWINVLLIAAPVGIALNYVGVSKVAVFVVNFVAIIPLAAM LSFATEEIALRTGETLGGLLNATFGNAVELIVAIIALIDNKVAIVKTSLIGSILSNLLLVMGCCFFFGGLRRPEQ HFNTTVAQTAASLLALAAASVIVPTVFDQAQDTGPDKVAALSRGTAVILLLVYAAYLFFQLKTHHGVFNEESQKV PAKPWSRAGISSGAIRQAFVMPGSLMSHGLPDQGENERLSRMLMNPARLDDDDDEEEEPQLHFLVALATLAGSTA IIALCAEFMVDSIDSVTKNGALSVEFVGLILLPIVGNAAEHATAVTVAIKDKMDLAIGVAIGSSMQIALLLIPLA VIIGWGQGNDEMNLSFDTFQVATMFAAVLVTNYLIGDGKSHWLEGFLLICLYAIIAVCSFYYPDSATKQ* |
| Coding | >Hirsu2|3563 ATGTCGACCTTAAATCATTTCCGCAACAGGCGCCAGGCGCACCGCTTCAGCCGCGCCAGCGCCGAGCAGTCCTGG AATCCTTTCCGTCACGTCGCCTGGGGCCCCGGACGCCACGCCGACACCTGGAGCCCCGGCCGCCTGGAGGACCAG AGAGAGGAAGCCGAGGGCGCGCGAGCAGGCCGAGCCGACCGGCTGACCCACGCCGCCACCGATCCCGTCCCCGTC CGCGCCGACTCCTCCAACGCCATGCCCGGACCCTTCAAGGCCGACGAAGCCTTCACTCAGTCCGCCCGGAAGCGC GACAGCGACGACAAGACGTCGTCCAACCCGTCCGTCGACACTGAAACGGCCGGCCTGCGCAACCGCAGACCCGAT GACGAGACGGCCAAGTCCGGCGCTGCCGCCGCACGCCCCATGGCCCCCGCCGCCGCCGCCGCCGCCGACCGGGAA TGCGACGCCGACGATGAAAAGGGCCGCAAGAGCCGCTTCTTCCGCCACGTCCAGCCCAAGTCTCCCTTCACCGCC GCCAACCAGCTGCAGCGGACCTTTCTCAACTCGTGGATCAACGTCCTCCTCATCGCCGCCCCCGTCGGCATCGCC CTCAACTATGTCGGCGTCTCCAAGGTGGCCGTCTTCGTCGTCAACTTCGTCGCCATCATCCCCCTCGCCGCCATG CTGAGCTTCGCGACCGAGGAGATCGCCCTGCGCACCGGCGAGACGCTCGGCGGCCTGCTCAACGCCACCTTTGGC AACGCCGTCGAGCTCATCGTCGCCATCATCGCCCTCATCGACAACAAGGTGGCCATCGTCAAGACGTCGCTCATC GGCTCCATCCTCTCCAACCTGCTCCTCGTCATGGGCTGCTGCTTCTTCTTCGGCGGCCTGCGCCGGCCCGAGCAG CACTTCAACACCACCGTCGCCCAGACGGCCGCCTCGCTGCTGGCCCTCGCCGCCGCCTCCGTCATCGTGCCGACC GTCTTCGACCAGGCCCAGGACACCGGCCCCGACAAGGTGGCCGCCCTGTCCCGCGGCACCGCCGTCATCCTCCTG CTCGTCTACGCCGCCTACCTCTTCTTCCAGCTCAAGACGCACCACGGCGTCTTCAACGAGGAGAGCCAGAAGGTG CCGGCCAAGCCGTGGAGCCGCGCTGGCATCAGCTCCGGCGCCATACGCCAGGCCTTCGTCATGCCCGGCTCCCTC ATGTCCCACGGCCTGCCCGACCAGGGCGAGAACGAGCGCCTGTCGCGGATGCTCATGAACCCGGCCCGCCTCGAC GACGACGACGACGAAGAGGAGGAGCCGCAGCTGCATTTCCTCGTCGCCCTCGCCACCCTGGCCGGCTCCACCGCC ATCATCGCCCTCTGCGCCGAGTTCATGGTCGACTCCATCGACTCCGTCACCAAGAACGGCGCCCTGTCCGTCGAG TTCGTCGGCCTCATCCTGCTGCCCATCGTCGGCAACGCCGCCGAGCACGCCACCGCCGTCACCGTCGCCATCAAG GACAAGATGGACCTCGCCATCGGCGTCGCCATCGGCTCCAGCATGCAGATCGCCCTGCTCCTCATCCCCCTGGCC GTCATCATCGGCTGGGGCCAGGGCAACGACGAGATGAACCTGAGCTTCGACACCTTCCAGGTCGCCACCATGTTC GCCGCCGTGCTGGTGACCAACTATCTCATCGGCGACGGCAAGAGCCACTGGCTCGAGGGCTTCCTGCTCATCTGC CTCTACGCCATCATCGCCGTCTGCTCGTTCTATTACCCCGACTCGGCCACCAAGCAGTAG |
| Transcript | >Hirsu2|3563 ATGTCGACCTTAAATCATTTCCGCAACAGGCGCCAGGCGCACCGCTTCAGCCGCGCCAGCGCCGAGCAGTCCTGG AATCCTTTCCGTCACGTCGCCTGGGGCCCCGGACGCCACGCCGACACCTGGAGCCCCGGCCGCCTGGAGGACCAG AGAGAGGAAGCCGAGGGCGCGCGAGCAGGCCGAGCCGACCGGCTGACCCACGCCGCCACCGATCCCGTCCCCGTC CGCGCCGACTCCTCCAACGCCATGCCCGGACCCTTCAAGGCCGACGAAGCCTTCACTCAGTCCGCCCGGAAGCGC GACAGCGACGACAAGACGTCGTCCAACCCGTCCGTCGACACTGAAACGGCCGGCCTGCGCAACCGCAGACCCGAT GACGAGACGGCCAAGTCCGGCGCTGCCGCCGCACGCCCCATGGCCCCCGCCGCCGCCGCCGCCGCCGACCGGGAA TGCGACGCCGACGATGAAAAGGGCCGCAAGAGCCGCTTCTTCCGCCACGTCCAGCCCAAGTCTCCCTTCACCGCC GCCAACCAGCTGCAGCGGACCTTTCTCAACTCGTGGATCAACGTCCTCCTCATCGCCGCCCCCGTCGGCATCGCC CTCAACTATGTCGGCGTCTCCAAGGTGGCCGTCTTCGTCGTCAACTTCGTCGCCATCATCCCCCTCGCCGCCATG CTGAGCTTCGCGACCGAGGAGATCGCCCTGCGCACCGGCGAGACGCTCGGCGGCCTGCTCAACGCCACCTTTGGC AACGCCGTCGAGCTCATCGTCGCCATCATCGCCCTCATCGACAACAAGGTGGCCATCGTCAAGACGTCGCTCATC GGCTCCATCCTCTCCAACCTGCTCCTCGTCATGGGCTGCTGCTTCTTCTTCGGCGGCCTGCGCCGGCCCGAGCAG CACTTCAACACCACCGTCGCCCAGACGGCCGCCTCGCTGCTGGCCCTCGCCGCCGCCTCCGTCATCGTGCCGACC GTCTTCGACCAGGCCCAGGACACCGGCCCCGACAAGGTGGCCGCCCTGTCCCGCGGCACCGCCGTCATCCTCCTG CTCGTCTACGCCGCCTACCTCTTCTTCCAGCTCAAGACGCACCACGGCGTCTTCAACGAGGAGAGCCAGAAGGTG CCGGCCAAGCCGTGGAGCCGCGCTGGCATCAGCTCCGGCGCCATACGCCAGGCCTTCGTCATGCCCGGCTCCCTC ATGTCCCACGGCCTGCCCGACCAGGGCGAGAACGAGCGCCTGTCGCGGATGCTCATGAACCCGGCCCGCCTCGAC GACGACGACGACGAAGAGGAGGAGCCGCAGCTGCATTTCCTCGTCGCCCTCGCCACCCTGGCCGGCTCCACCGCC ATCATCGCCCTCTGCGCCGAGTTCATGGTCGACTCCATCGACTCCGTCACCAAGAACGGCGCCCTGTCCGTCGAG TTCGTCGGCCTCATCCTGCTGCCCATCGTCGGCAACGCCGCCGAGCACGCCACCGCCGTCACCGTCGCCATCAAG GACAAGATGGACCTCGCCATCGGCGTCGCCATCGGCTCCAGCATGCAGATCGCCCTGCTCCTCATCCCCCTGGCC GTCATCATCGGCTGGGGCCAGGGCAACGACGAGATGAACCTGAGCTTCGACACCTTCCAGGTCGCCACCATGTTC GCCGCCGTGCTGGTGACCAACTATCTCATCGGCGACGGCAAGAGCCACTGGCTCGAGGGCTTCCTGCTCATCTGC CTCTACGCCATCATCGCCGTCTGCTCGTTCTATTACCCCGACTCGGCCACCAAGCAGTAG |
| Gene | >Hirsu2|3563 ATGTCGACCTGTGAGTGCCGTTGATTTTGAGAAAATTGGACCTCGTCTTTCCCTCTGTCTCCTTTTTTTCTGAGA AAAAAAAAAACACCCACGGCCGTTTGTGTCCACCTGCCTTTTCCATCACAGGCAACATCGCCATCATCACCAGCA CCCTCATGTTACTACTCCCCATGTCCCCCTCTGCTGCCGAACAGCCAGTGAGCCGGCCGGGCAGGCGCTAGAATC GGCGCCGCCTCGGCCTTCAAACAAGCTTGCTCGACGGTCGGAACCCAAATAGGGCCCGATTCGTCACCCGTCGCC ACCCCTTTGTCCCCCTCCTGTTCAGTGCCGTCTTATCCAGGAGACGCGCGCTCGCATCATGATCCTCACCAAGCC TGCACAGCCCCCCTCCGTTGGCGTACGTGCGCAGTTCAAGAGGCCGGCTCGTCCCTTGGACGCACTCCACCGTCC CTCTTTACCCTGTCACAAACCTTGGCTTCTCCTAGTCTAAACCTCTTAAGGTCCCGGCGCGACTGCACTCCCCCT CGGGTCCCTATCCCGTCCTTTTGAGAACAGCCTTCTTCCTCTCGCACTGCCGCCCATGCCCTCGCTCGGCGCCCT CTCCCTCCCCGTCCTCCCCCGCTTCGCTCCGCCGACGCCGAGCCAGCATCTCTGCCGCGCTGACCAACGACTGCC ATGGTAGTAAATCATTTCCGCAACAGGCGCCAGGCGCACCGCTTCAGCCGCGCCAGCGCCGAGCAGTCCTGGAAT CCTTTCCGTCACGTCGCCTGGGGCCCCGGACGCCACGCCGACACCTGGAGCCCCGGCCGCCTGGAGGACCAGAGA GAGGAAGCCGAGGGCGCGCGAGCAGGCCGAGCCGACCGGCTGACCCACGCCGCCACCGATCCCGTCCCCGTCCGC GCCGACTCCTCCAACGCCATGCCCGGACCCTTCAAGGCCGACGAAGCCTTCACTCAGTCCGCCCGGAAGCGCGAC AGCGACGACAAGACGTCGTCCAACCCGTCCGTCGACACTGAAACGGCCGGCCTGCGCAACCGCAGACCCGATGAC GAGACGGCCAAGTCCGGCGCTGCCGCCGCACGCCCCATGGCCCCCGCCGCCGCCGCCGCCGCCGACCGGGAATGC GACGCCGACGATGAAAAGGGCCGCAAGAGCCGCTTCTTCCGCCACGTCCAGCCCAAGTCTCCCTTCACCGCCGCC AACCAGCTGCAGCGGACCTTTCTCAACTCGTGGATCAACGTCCTCCTCATCGCCGCCCCCGTCGGCATCGCCCTC AACTATGTCGGCGTCTCCAAGGTGGCCGTCTTCGTCGTCAACTTCGTCGCCATCATCCCCCTCGCCGCCATGCTG AGCTTCGCGACCGAGGAGATCGCCCTGCGCACCGGCGAGACGCTCGGCGGCCTGCTCAACGCCACCTTTGGCAAC GCCGTCGAGCTCATCGTCGCCATCATCGCCCTCATCGACAACAAGGTGGCCATCGTCAAGACGTCGCTCATCGGC TCCATCCTCTCCAACCTGCTCCTCGTCATGGGCTGCTGCTTCTTCTTCGGCGGCCTGCGCCGGCCCGAGCAGCAC TTCAACACCACCGTCGCCCAGACGGCCGCCTCGCTGCTGGCCCTCGCCGCCGCCTCCGTCATCGTGCCGACCGTC TTCGACCAGGCCCAGGACACCGGCCCCGACAAGGTGGCCGCCCTGTCCCGCGGCACCGCCGTCATCCTCCTGCTC GTCTACGCCGCCTACCTCTTCTTCCAGCTCAAGACGCACCACGGCGTCTTCAACGAGGAGAGCCAGAAGGTGCCG GCCAAGCCGTGGAGCCGCGCTGGCATCAGCTCCGGCGCCATACGCCAGGCCTTCGTCATGCCCGGCTCCCTCATG TCCCACGGCCTGCCCGACCAGGGCGAGAACGAGCGCCTGTCGCGGATGCTCATGAACCCGGCCCGCCTCGACGAC GACGACGACGAAGAGGAGGAGCCGCAGCTGCATTTCCTCGTCGCCCTCGCCACCCTGGCCGGCTCCACCGCCATC ATCGCCCTCTGCGCCGAGTTCATGGTCGACTCCATCGACTCCGTCACCAAGAACGGCGCCCTGTCCGTCGAGTTC GTCGGCCTCATCCTGCTGCCCATCGTCGGCAACGCCGCCGAGCACGCCACCGCCGTCACCGTCGCCATCAAGGAC AAGATGGACCTCGCCATCGGCGTCGCCATCGGCTCCAGCATGCAGATCGCCCTGCTCCTCATCCCCCTGGCCGTC ATCATCGGCTGGGGCCAGGGCAACGACGAGATGAACCTGAGCTTCGACACCTTCCAGGTCGCCACCATGTTCGCC GCCGTGCTGGTGACCAACTATCTCATCGGCGACGGCAAGAGCCACTGGCTCGAGGGCTTCCTGCTCATCTGCCTC TACGCCATCATCGCCGTCTGCTCGTTCTGTGAGTCTCACCCTGGACGTTTTGCCCCAGCTCTCCGGCGCGCGATT GCTGACCCGCCCTTGTAGATTACCCCGACTCGGCCACCAAGCAGTAG |