© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3557 |
| Gene name | |
| Location | Contig_194:6709..7189 |
| Strand | + |
| Gene length (bp) | 480 |
| Transcript length (bp) | 480 |
| Coding sequence length (bp) | 480 |
| Protein length (aa) | 160 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13695 | zf-3CxxC | Zinc-binding domain | 2.1E-22 | 53 | 150 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5262 | 0.9198 | 0.0592 | 0.0429 | 0.095 | 0.0045 | 0.0521 | 0.0804 | 0.011 | 0.0045 |
| Orthofinder run ID | 4 |
| Orthogroup | 5147 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3557 MARKKSKQAQNMKWSMYPELHDEVSELLEDDDLYFDFVNYEPSRGPIKTYVTNIMGKFICRNSTCGANGWSSKVI AIKIRMYTGAQYNAQVYHQRCKECESLSEPILDDSYAERVAYRIKKWCGVDVERPPYHGESKGPHESALCEGCRD NNCPWLKRS* |
| Coding | >Hirsu2|3557 ATGGCGCGGAAAAAGTCAAAGCAGGCTCAGAACATGAAATGGTCCATGTATCCAGAGTTACATGACGAGGTCAGC GAGCTACTTGAGGACGACGACCTCTATTTCGACTTCGTCAATTACGAACCATCACGCGGACCTATAAAAACATAC GTCACGAACATCATGGGGAAATTCATTTGCCGTAATAGCACCTGCGGCGCGAACGGATGGTCCAGCAAGGTGATT GCGATCAAAATACGGATGTATACAGGTGCGCAATACAACGCGCAAGTCTACCATCAGAGATGCAAAGAATGCGAG AGCCTCAGCGAGCCTATTCTAGACGACTCGTATGCGGAACGAGTCGCCTACCGCATCAAAAAATGGTGTGGCGTC GACGTTGAACGGCCTCCTTATCATGGCGAAAGCAAGGGTCCGCACGAGTCAGCTTTGTGTGAGGGTTGTCGAGAC AACAACTGCCCGTGGCTGAAGAGATCCTAG |
| Transcript | >Hirsu2|3557 ATGGCGCGGAAAAAGTCAAAGCAGGCTCAGAACATGAAATGGTCCATGTATCCAGAGTTACATGACGAGGTCAGC GAGCTACTTGAGGACGACGACCTCTATTTCGACTTCGTCAATTACGAACCATCACGCGGACCTATAAAAACATAC GTCACGAACATCATGGGGAAATTCATTTGCCGTAATAGCACCTGCGGCGCGAACGGATGGTCCAGCAAGGTGATT GCGATCAAAATACGGATGTATACAGGTGCGCAATACAACGCGCAAGTCTACCATCAGAGATGCAAAGAATGCGAG AGCCTCAGCGAGCCTATTCTAGACGACTCGTATGCGGAACGAGTCGCCTACCGCATCAAAAAATGGTGTGGCGTC GACGTTGAACGGCCTCCTTATCATGGCGAAAGCAAGGGTCCGCACGAGTCAGCTTTGTGTGAGGGTTGTCGAGAC AACAACTGCCCGTGGCTGAAGAGATCCTAG |
| Gene | >Hirsu2|3557 ATGGCGCGGAAAAAGTCAAAGCAGGCTCAGAACATGAAATGGTCCATGTATCCAGAGTTACATGACGAGGTCAGC GAGCTACTTGAGGACGACGACCTCTATTTCGACTTCGTCAATTACGAACCATCACGCGGACCTATAAAAACATAC GTCACGAACATCATGGGGAAATTCATTTGCCGTAATAGCACCTGCGGCGCGAACGGATGGTCCAGCAAGGTGATT GCGATCAAAATACGGATGTATACAGGTGCGCAATACAACGCGCAAGTCTACCATCAGAGATGCAAAGAATGCGAG AGCCTCAGCGAGCCTATTCTAGACGACTCGTATGCGGAACGAGTCGCCTACCGCATCAAAAAATGGTGTGGCGTC GACGTTGAACGGCCTCCTTATCATGGCGAAAGCAAGGGTCCGCACGAGTCAGCTTTGTGTGAGGGTTGTCGAGAC AACAACTGCCCGTGGCTGAAGAGATCCTAG |