Protein ID | Hirsu2|3552 |
Gene name | |
Location | Contig_1938:285..2019 |
Strand | - |
Gene length (bp) | 1734 |
Transcript length (bp) | 1512 |
Coding sequence length (bp) | 1512 |
Protein length (aa) | 504 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01896 | DNA_primase_S | DNA primase small subunit | 9.1E-64 | 188 | 418 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14215|PRI1_SCHPO | DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri1 PE=1 SV=1 | 76 | 503 | 8.0E-164 |
sp|P20664|PRI1_MOUSE | DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1 | 86 | 483 | 2.0E-114 |
sp|P49642|PRI1_HUMAN | DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1 | 89 | 483 | 5.0E-114 |
sp|P10363|PRI1_YEAST | DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI1 PE=1 SV=2 | 92 | 499 | 7.0E-111 |
sp|Q24317|PRI1_DROME | DNA primase small subunit OS=Drosophila melanogaster GN=DNApol-alpha50 PE=2 SV=2 | 67 | 493 | 7.0E-95 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14215|PRI1_SCHPO | DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pri1 PE=1 SV=1 | 76 | 503 | 8.0E-164 |
sp|P20664|PRI1_MOUSE | DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1 | 86 | 483 | 2.0E-114 |
sp|P49642|PRI1_HUMAN | DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1 | 89 | 483 | 5.0E-114 |
sp|P10363|PRI1_YEAST | DNA primase small subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRI1 PE=1 SV=2 | 92 | 499 | 7.0E-111 |
sp|Q24317|PRI1_DROME | DNA primase small subunit OS=Drosophila melanogaster GN=DNApol-alpha50 PE=2 SV=2 | 67 | 493 | 7.0E-95 |
sp|Q25998|PRI1_PLAFK | DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1 | 95 | 484 | 4.0E-76 |
sp|Q7KQM1|PRI1_PLAF7 | DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0366 PE=3 SV=1 | 95 | 484 | 4.0E-76 |
sp|P34471|PRI1_CAEEL | DNA primase small subunit OS=Caenorhabditis elegans GN=pri-1 PE=3 SV=1 | 89 | 484 | 1.0E-66 |
sp|O29516|PRIS_ARCFU | DNA primase small subunit PriS OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=priS PE=3 SV=2 | 119 | 271 | 2.0E-06 |
sp|A3MUU9|PRIS_PYRCJ | DNA primase small subunit PriS OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=priS PE=3 SV=1 | 108 | 272 | 4.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003896 | DNA primase activity | Yes |
GO:0006269 | DNA replication, synthesis of RNA primer | Yes |
GO:0008152 | metabolic process | No |
GO:0097747 | RNA polymerase activity | No |
GO:0034654 | nucleobase-containing compound biosynthetic process | No |
GO:0009987 | cellular process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0032774 | RNA biosynthetic process | No |
GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044271 | cellular nitrogen compound biosynthetic process | No |
GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0009058 | biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0019438 | aromatic compound biosynthetic process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0140098 | catalytic activity, acting on RNA | No |
GO:0016779 | nucleotidyltransferase activity | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0018130 | heterocycle biosynthetic process | No |
GO:0140640 | catalytic activity, acting on a nucleic acid | No |
GO:0044238 | primary metabolic process | No |
GO:0034062 | 5'-3' RNA polymerase activity | No |
GO:0016070 | RNA metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:1901362 | organic cyclic compound biosynthetic process | No |
GO:0016740 | transferase activity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.4287 | 0.8421 | 0.068 | 0.0594 | 0.293 | 0.0015 | 0.0483 | 0.0349 | 0.0155 | 0.0005 |
Orthofinder run ID | 4 |
Orthogroup | 5145 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3552 MPHPVAAEPGRRPPDAVDEAAMDEDGRAPGEDGRALPGEAGRQVALDDLFADVDSDDDFLDDAPAEEAAVKEEEE DGSEAGPALRASDPEVMRSFYQRLFPWRQLFQWLNHGPSPSNDFANREFAFTLQNDAYLRYQSFATADLLRKDVL RLMPSRFEIGPVYSTNPRDRKTLRNSSAFRPLAKELCFDIDLTDYDDVRTCCDKANICAKCWRFVTMAIKVVDAA LRHDFGFAHILWVYSGRRGAHAWVCDRKARALDDPKRKAIAGYLEVVRGGAQSGKKVNVRRPLHPHLSRSLDILK AHFQEDVLVTQDPWASNEQAERLLQLLPDRTLNESLRRKWAATPGRDSAAKWADIDAAAKAGASKQLVPRALLEA KQDVVLEYTYPRLDIEVSKKLNHLLKSPFVVHPGTGRVCVPIDAARPDDFDPLAVPTVQGLLAEIDAWQADAAGD EADADAKKGGPADWEKTSLRPYVDYFRAFVAALMRDEREVRVKRERDEDSMEF* |
Coding | >Hirsu2|3552 ATGCCGCACCCGGTAGCCGCGGAGCCGGGGCGGCGCCCGCCCGACGCGGTCGACGAGGCGGCGATGGACGAGGAC GGTCGCGCGCCGGGAGAGGACGGTCGCGCACTGCCTGGCGAGGCCGGGAGGCAGGTCGCGCTGGACGATCTGTTC GCCGACGTCGACTCGGACGATGACTTTCTTGACGACGCGCCCGCGGAGGAGGCGGCGGTGAAGGAGGAGGAGGAG GATGGCTCGGAGGCGGGGCCGGCGCTCCGGGCGTCGGACCCGGAGGTCATGCGCAGCTTCTACCAGCGGCTCTTC CCCTGGCGCCAGCTTTTCCAGTGGCTCAACCACGGGCCCAGCCCTAGTAACGACTTTGCGAACCGCGAGTTCGCC TTCACCCTTCAGAACGACGCCTACCTGCGCTACCAGTCCTTTGCCACGGCCGACCTCCTACGCAAGGACGTGCTC CGGCTGATGCCGTCGCGCTTCGAGATCGGCCCCGTCTACAGCACGAACCCGCGCGACCGCAAGACGCTGCGCAAC TCGTCCGCATTCCGGCCGCTGGCCAAGGAGCTCTGCTTCGACATCGACCTGACGGACTACGACGACGTGCGCACC TGCTGCGACAAGGCCAACATCTGCGCCAAGTGCTGGCGCTTCGTGACCATGGCCATCAAGGTCGTCGACGCCGCC CTGCGCCACGACTTCGGCTTCGCCCACATCCTCTGGGTCTACTCCGGCCGCCGCGGCGCCCACGCCTGGGTCTGC GACCGCAAGGCCCGCGCGCTCGACGACCCTAAGAGGAAGGCGATCGCCGGTTACCTCGAAGTTGTCAGGGGCGGC GCGCAGAGCGGCAAGAAGGTCAATGTCCGGCGGCCGCTGCATCCTCATCTCTCCCGCAGCCTCGACATCCTCAAG GCCCACTTCCAGGAGGATGTGCTCGTCACGCAGGATCCCTGGGCCTCGAACGAGCAGGCCGAGCGGCTGCTGCAG CTGCTGCCGGACCGGACGCTTAACGAGTCGCTGCGGCGCAAGTGGGCGGCCACCCCCGGGCGCGACTCGGCCGCC AAGTGGGCCGACATTGACGCCGCGGCCAAGGCCGGCGCCAGCAAGCAGCTGGTGCCGCGGGCGCTGCTCGAGGCC AAGCAGGACGTCGTGCTCGAGTACACGTACCCGCGCCTCGACATCGAGGTCAGCAAGAAGCTCAACCATCTGCTC AAGAGCCCGTTCGTCGTCCACCCGGGCACCGGCCGCGTCTGCGTGCCCATCGACGCCGCCCGCCCGGACGACTTC GACCCGCTGGCCGTGCCGACCGTCCAGGGCCTGCTGGCCGAGATCGACGCCTGGCAGGCCGACGCCGCCGGCGAC GAGGCCGACGCCGACGCCAAGAAGGGGGGACCGGCGGACTGGGAGAAGACGAGCCTGCGGCCGTACGTCGACTAC TTCCGCGCCTTCGTCGCCGCGCTCATGCGCGACGAGCGGGAGGTGCGGGTCAAGAGGGAGCGGGACGAGGACTCG ATGGAGTTTTGA |
Transcript | >Hirsu2|3552 ATGCCGCACCCGGTAGCCGCGGAGCCGGGGCGGCGCCCGCCCGACGCGGTCGACGAGGCGGCGATGGACGAGGAC GGTCGCGCGCCGGGAGAGGACGGTCGCGCACTGCCTGGCGAGGCCGGGAGGCAGGTCGCGCTGGACGATCTGTTC GCCGACGTCGACTCGGACGATGACTTTCTTGACGACGCGCCCGCGGAGGAGGCGGCGGTGAAGGAGGAGGAGGAG GATGGCTCGGAGGCGGGGCCGGCGCTCCGGGCGTCGGACCCGGAGGTCATGCGCAGCTTCTACCAGCGGCTCTTC CCCTGGCGCCAGCTTTTCCAGTGGCTCAACCACGGGCCCAGCCCTAGTAACGACTTTGCGAACCGCGAGTTCGCC TTCACCCTTCAGAACGACGCCTACCTGCGCTACCAGTCCTTTGCCACGGCCGACCTCCTACGCAAGGACGTGCTC CGGCTGATGCCGTCGCGCTTCGAGATCGGCCCCGTCTACAGCACGAACCCGCGCGACCGCAAGACGCTGCGCAAC TCGTCCGCATTCCGGCCGCTGGCCAAGGAGCTCTGCTTCGACATCGACCTGACGGACTACGACGACGTGCGCACC TGCTGCGACAAGGCCAACATCTGCGCCAAGTGCTGGCGCTTCGTGACCATGGCCATCAAGGTCGTCGACGCCGCC CTGCGCCACGACTTCGGCTTCGCCCACATCCTCTGGGTCTACTCCGGCCGCCGCGGCGCCCACGCCTGGGTCTGC GACCGCAAGGCCCGCGCGCTCGACGACCCTAAGAGGAAGGCGATCGCCGGTTACCTCGAAGTTGTCAGGGGCGGC GCGCAGAGCGGCAAGAAGGTCAATGTCCGGCGGCCGCTGCATCCTCATCTCTCCCGCAGCCTCGACATCCTCAAG GCCCACTTCCAGGAGGATGTGCTCGTCACGCAGGATCCCTGGGCCTCGAACGAGCAGGCCGAGCGGCTGCTGCAG CTGCTGCCGGACCGGACGCTTAACGAGTCGCTGCGGCGCAAGTGGGCGGCCACCCCCGGGCGCGACTCGGCCGCC AAGTGGGCCGACATTGACGCCGCGGCCAAGGCCGGCGCCAGCAAGCAGCTGGTGCCGCGGGCGCTGCTCGAGGCC AAGCAGGACGTCGTGCTCGAGTACACGTACCCGCGCCTCGACATCGAGGTCAGCAAGAAGCTCAACCATCTGCTC AAGAGCCCGTTCGTCGTCCACCCGGGCACCGGCCGCGTCTGCGTGCCCATCGACGCCGCCCGCCCGGACGACTTC GACCCGCTGGCCGTGCCGACCGTCCAGGGCCTGCTGGCCGAGATCGACGCCTGGCAGGCCGACGCCGCCGGCGAC GAGGCCGACGCCGACGCCAAGAAGGGGGGACCGGCGGACTGGGAGAAGACGAGCCTGCGGCCGTACGTCGACTAC TTCCGCGCCTTCGTCGCCGCGCTCATGCGCGACGAGCGGGAGGTGCGGGTCAAGAGGGAGCGGGACGAGGACTCG ATGGAGTTTTGA |
Gene | >Hirsu2|3552 ATGCCGCACCCGGTAGCCGCGGAGCCGGGGCGGCGCCCGCCCGACGCGGTCGACGAGGCGGCGATGGACGAGGAC GGTCGCGCGCCGGGAGAGGACGGTCGCGCACTGCCTGGCGAGGCCGGGAGGCAGGTCGCGCTGGACGATCTGTTC GCCGACGTCGACTCGGACGATGACTTTCTTGACGACGCGCCCGCGGAGGAGGCGGCGGTGAAGGAGGAGGAGGAG GATGGCTCGGAGGCGGGGCCGGCGCTCCGGGCGTCGGACCCGGAGGTCATGCGCAGCTTCTACCAGCGGCTCTTC CCCTGGCGCCAGCTTTTCCAGTGGCTCAACCACGGGCCCAGCCCTAGTAACGACTTTGCGAACCGCGAGTTCGCC TTCACCCTTCAGAACGACGCCTACCTGCGCTACCAGTCCTTTGCCACGGCCGACCTGTGCGTCGGCCCTCCCCTC TCTCTTACAAACACACACTCCCTTCCCCCCTTGACGAGTCGACGGTCCGCTGACGAAGTTTTTGCCTCCTGGGCA GCCTACGCAAGGACGTGCTCCGGCTGATGCCGTCGCGCTTCGAGATCGGCCCCGTCTACAGCACGAACCCGCGCG ACCGCAAGACGCTGCGCAACTCGTCCGCATTCCGGCCGCTGGCCAAGGAGCTCTGCTTCGACATCGACCTGACGG ACTACGACGACGTGCGCACCTGCTGCGACAAGGCCAACATCTGCGCCAAGTGCTGGCGCTTCGTGACCATGGCCA TCAAGGTCGTCGACGCCGCCCTGCGCCACGACTTCGGCTTCGCCCACATCCTCTGGGTCTACTCCGGCCGCCGCG GCGCCCACGCCTGGGTCTGCGACCGCAAGGCCCGCGCGCTCGACGACCCTAAGAGGAAGGCGATCGCCGGTTACC TCGAAGTTGTCAGGGGCGGCGCGCAGAGCGGCAAGAAGGTCAATGTCCGGCGGCCGCTGCATCCTCATCTCTCGT ACGTTCCTCTCTCTCCCTCCGCCCCCTTAGCACATCTACGGAAAAACACGGCCGATGAGAGAGCGACGATGATGA TGGGGGGACGACGGGCGGCTCAGAAAGGCTGACTCGCGCGACACCTGCAGCCGCAGCCTCGACATCCTCAAGGCC CACTTCCAGGAGGATGTGCTCGTCACGCAGGATCCCTGGGCCTCGAACGAGCAGGCCGAGCGGCTGCTGCAGCTG CTGCCGGACCGGACGCTTAACGAGTCGCTGCGGCGCAAGTGGGCGGCCACCCCCGGGCGCGACTCGGCCGCCAAG TGGGCCGACATTGACGCCGCGGCCAAGGCCGGCGCCAGCAAGCAGCTGGTGCCGCGGGCGCTGCTCGAGGCCAAG CAGGACGTCGTGCTCGAGTACACGTACCCGCGCCTCGACATCGAGGTCAGCAAGAAGCTCAACCATCTGCTCAAG AGCCCGTTCGTCGTCCACCCGGGCACCGGCCGCGTCTGCGTGCCCATCGACGCCGCCCGCCCGGACGACTTCGAC CCGCTGGCCGTGCCGACCGTCCAGGGCCTGCTGGCCGAGATCGACGCCTGGCAGGCCGACGCCGCCGGCGACGAG GCCGACGCCGACGCCAAGAAGGGGGGACCGGCGGACTGGGAGAAGACGAGCCTGCGGCCGTACGTCGACTACTTC CGCGCCTTCGTCGCCGCGCTCATGCGCGACGAGCGGGAGGTGCGGGTCAAGAGGGAGCGGGACGAGGACTCGATG GAGTTTTGA |