Protein ID | Hirsu2|355 |
Gene name | |
Location | Contig_1069:6982..8883 |
Strand | + |
Gene length (bp) | 1901 |
Transcript length (bp) | 1440 |
Coding sequence length (bp) | 1440 |
Protein length (aa) | 480 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16010 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase | 1.4E-22 | 37 | 198 |
PF03188 | Cytochrom_B561 | Eukaryotic cytochrome b561 | 1.4E-06 | 257 | 354 |
PF10348 | DUF2427 | Domain of unknown function (DUF2427) | 2.0E-05 | 230 | 317 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide | 0.0788 | 0.0767 | 0.5085 | 0.4489 | 0.0956 | 0.0203 | 0.4197 | 0.5933 | 0.4968 | 0.0056 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 26 | 0.537594 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 230 | 252 | 22 |
2 | 265 | 287 | 22 |
3 | 297 | 316 | 19 |
4 | 335 | 357 | 22 |
5 | 361 | 383 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2468 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|355 MLLDLFWRAALAATAATVAGSPPAAAAQDDDGGQSTFVSPGGDLAFGFTVPDNGNSDVFFSLRVPVENAWGAVGL GSDDMKGALFLVIYRDESGRNVTFSPRLAYGNYEPQYYPDLRVEVLPGTGVVDGHMLFTARCTDHCRSWPAADSN SGYIDVTSPNQKAIYALGPRDGFRSNDPAADVKFHREFGVFTIDMKRTQGSPDAPVLSAASRSLGAELDYRRTGR ADYKAVLHATFMVVFLLVMFPLGVALLRLGRWARWHGLNQAVAVVGVLAGLAMGILASFHYQRSRGFRSHHQILG FIVVAFVLAQFALGLLHHQEHRKTQAPTRYSKVHVWLGRLIIFLGTLNAFFGFTFALNRKVGMALAGLIILGAFA LMFFSVGRQWLAKKNQRRDATNPRHGAPAGYQPQPWREPGQGPGPSGMPYPSEPPPGYEPPSQQIGLQPVSTSPA AASPWKSSDAKDFEDDPALGSTHRPREFA* |
Coding | >Hirsu2|355 ATGCTGCTCGACTTGTTCTGGCGCGCGGCGCTGGCTGCCACAGCAGCCACCGTCGCGGGCTCGCCCCCGGCGGCC GCGGCCCAAGATGACGACGGCGGCCAGTCGACCTTCGTCTCGCCCGGCGGCGACCTCGCCTTCGGCTTCACGGTG CCCGACAACGGCAACTCGGACGTCTTCTTCAGCCTGCGCGTGCCGGTCGAGAACGCGTGGGGCGCCGTCGGGCTC GGCAGCGACGACATGAAGGGCGCCCTCTTCCTCGTCATCTACCGCGACGAGAGCGGCCGCAACGTCACCTTCTCG CCGCGCCTCGCCTACGGCAACTACGAGCCCCAGTACTACCCGGACCTCCGCGTCGAGGTGCTGCCCGGCACCGGC GTCGTCGACGGCCACATGCTCTTCACCGCCCGCTGCACCGACCACTGCCGCAGCTGGCCCGCCGCCGACTCCAAC AGCGGCTACATCGACGTCACCTCGCCCAACCAAAAGGCCATCTACGCCCTCGGCCCGCGCGACGGCTTCCGCAGC AACGACCCGGCCGCCGACGTCAAGTTCCACCGCGAGTTCGGCGTCTTCACCATCGACATGAAGCGCACCCAGGGC TCCCCCGACGCCCCCGTCCTGTCCGCCGCCTCCCGCAGTCTCGGCGCCGAGCTCGACTACCGCCGCACCGGCCGC GCCGACTACAAGGCCGTCCTGCACGCCACCTTCATGGTCGTCTTTCTGCTCGTCATGTTCCCCCTCGGCGTCGCC CTCCTCCGCCTCGGCCGCTGGGCCCGCTGGCACGGCCTCAACCAGGCCGTCGCCGTCGTCGGCGTCCTCGCCGGC CTCGCCATGGGCATCCTCGCCAGCTTCCACTATCAGAGGTCGAGAGGCTTCCGCTCTCACCACCAAATCCTCGGC TTCATCGTCGTCGCCTTCGTCCTAGCTCAGTTCGCCCTCGGCCTCCTCCACCACCAGGAGCACCGCAAGACCCAG GCACCTACCAGGTACAGCAAGGTGCACGTCTGGCTGGGAAGGCTCATCATCTTCCTCGGCACCCTCAACGCCTTC TTCGGCTTTACCTTTGCCCTCAACCGCAAGGTGGGCATGGCGCTGGCCGGCCTCATCATCCTCGGCGCCTTCGCC CTCATGTTCTTCTCCGTCGGGCGGCAATGGCTTGCCAAGAAGAACCAGCGCCGTGACGCCACCAATCCGCGCCAC GGCGCGCCTGCGGGGTACCAACCGCAGCCGTGGCGCGAGCCTGGCCAGGGCCCCGGCCCGTCGGGCATGCCCTAT CCGTCCGAGCCGCCGCCGGGGTACGAGCCGCCATCGCAGCAGATTGGCCTGCAGCCCGTATCGACGTCGCCCGCC GCGGCCTCGCCCTGGAAGAGCTCCGATGCCAAGGACTTCGAGGACGACCCCGCTCTCGGGAGCACGCATCGGCCG CGAGAGTTTGCGTAA |
Transcript | >Hirsu2|355 ATGCTGCTCGACTTGTTCTGGCGCGCGGCGCTGGCTGCCACAGCAGCCACCGTCGCGGGCTCGCCCCCGGCGGCC GCGGCCCAAGATGACGACGGCGGCCAGTCGACCTTCGTCTCGCCCGGCGGCGACCTCGCCTTCGGCTTCACGGTG CCCGACAACGGCAACTCGGACGTCTTCTTCAGCCTGCGCGTGCCGGTCGAGAACGCGTGGGGCGCCGTCGGGCTC GGCAGCGACGACATGAAGGGCGCCCTCTTCCTCGTCATCTACCGCGACGAGAGCGGCCGCAACGTCACCTTCTCG CCGCGCCTCGCCTACGGCAACTACGAGCCCCAGTACTACCCGGACCTCCGCGTCGAGGTGCTGCCCGGCACCGGC GTCGTCGACGGCCACATGCTCTTCACCGCCCGCTGCACCGACCACTGCCGCAGCTGGCCCGCCGCCGACTCCAAC AGCGGCTACATCGACGTCACCTCGCCCAACCAAAAGGCCATCTACGCCCTCGGCCCGCGCGACGGCTTCCGCAGC AACGACCCGGCCGCCGACGTCAAGTTCCACCGCGAGTTCGGCGTCTTCACCATCGACATGAAGCGCACCCAGGGC TCCCCCGACGCCCCCGTCCTGTCCGCCGCCTCCCGCAGTCTCGGCGCCGAGCTCGACTACCGCCGCACCGGCCGC GCCGACTACAAGGCCGTCCTGCACGCCACCTTCATGGTCGTCTTTCTGCTCGTCATGTTCCCCCTCGGCGTCGCC CTCCTCCGCCTCGGCCGCTGGGCCCGCTGGCACGGCCTCAACCAGGCCGTCGCCGTCGTCGGCGTCCTCGCCGGC CTCGCCATGGGCATCCTCGCCAGCTTCCACTATCAGAGGTCGAGAGGCTTCCGCTCTCACCACCAAATCCTCGGC TTCATCGTCGTCGCCTTCGTCCTAGCTCAGTTCGCCCTCGGCCTCCTCCACCACCAGGAGCACCGCAAGACCCAG GCACCTACCAGGTACAGCAAGGTGCACGTCTGGCTGGGAAGGCTCATCATCTTCCTCGGCACCCTCAACGCCTTC TTCGGCTTTACCTTTGCCCTCAACCGCAAGGTGGGCATGGCGCTGGCCGGCCTCATCATCCTCGGCGCCTTCGCC CTCATGTTCTTCTCCGTCGGGCGGCAATGGCTTGCCAAGAAGAACCAGCGCCGTGACGCCACCAATCCGCGCCAC GGCGCGCCTGCGGGGTACCAACCGCAGCCGTGGCGCGAGCCTGGCCAGGGCCCCGGCCCGTCGGGCATGCCCTAT CCGTCCGAGCCGCCGCCGGGGTACGAGCCGCCATCGCAGCAGATTGGCCTGCAGCCCGTATCGACGTCGCCCGCC GCGGCCTCGCCCTGGAAGAGCTCCGATGCCAAGGACTTCGAGGACGACCCCGCTCTCGGGAGCACGCATCGGCCG CGAGAGTTTGCGTAA |
Gene | >Hirsu2|355 ATGCTGCTCGACTTGTTCTGGCGCGCGGCGCTGGCTGCCACAGGTGCGATCTCTGAGCGAACCCCTCCTCTTGCT CCTCCTCCTCCACCGCCAAGGGCCCCATCGTGGCTTTGATGCGGGGACGCTTTTGCCAACGTCATCCCTGTCTCT TCCTCCTTTTCCGAGCTCCTTGTCTCCCTCCTGCTCCTGCTCCTGCTCCTGCTCCTCGTCCTCCTGCTGCTCCTC TTCCTTCTCCTCCTCCACGATGCCTCCTCCTCCACGATGCTTCCCTCTGCAGCACGCAAAGCTGGTCCCTTGATT TGCCGTCGTCGTTCGCCTGCTGACGGACGAGAGCACACGGCCTACAGCAGCCACCGTCGCGGGCTCGCCCCCGGC GGCCGCGGCCCAAGATGACGACGGCGGCCAGTCGACCTTCGTCTCGCCCGGCGGCGACCTCGCCTTCGGCTTCAC GGTGCCCGACAACGGCAACTCGGACGTCTTCTTCAGCCTGCGCGTGCCGGTCGAGAACGCGTGGGGCGCCGTCGG GCTCGGCAGCGACGACATGAAGGGCGCCCTCTTCCTCGTCATCTACCGCGACGAGAGCGGCCGCAACGTCACCTT CTCGCCGCGCCTCGCCTACGGCAACTACGAGCCCCAGTACTACCCGGACCTCCGCGTCGAGGTGCTGCCCGGCAC CGGCGTCGTCGACGGCCACATGCTCTTCACCGCCCGCTGCACCGACCACTGCCGCAGCTGGCCCGCCGCCGACTC CAACAGCGGCTACATCGACGTCACCTCGCCCAACCAAAAGGCCATCTACGCCCTCGGCCCGCGCGACGGCTTCCG CAGCAACGACCCGGCCGCCGACGTCAAGTTCCACCGCGAGTTCGGCGTCTTCACCATCGACATGAAGCGCACCCA GGGCTCCCCCGACGCCCCCGTCCTGTCCGCCGCCTCCCGCAGTCTCGGCGCCGAGCTCGACTACCGCCGCACCGG CCGCGCCGACTACAAGGCCGTCCTGCACGCCACCTTCATGGTCGTCTTTCTGCTCGTCATGTTCCCCCTCGGCGT CGCCCTCCTCCGCCTCGGCCGCTGGGCCCGCTGGCACGGCCTCAACCAGGCCGTCGCCGTCGTCGGCGTCCTCGC CGGCCTCGCCATGGGCATCCTCGCCAGCTTCCACTATCAGAGGGTCCGTCACTCGTCTTCTCCCCCCCCCTTCCC CTTTGCGCTTGCCCCCGTGAATGTTGACTGACGGACGCCATCCCCCCCGTCCCCAGTCGAGAGGCTTCCGCTCTC ACCACCAAATCCTCGGCTTCATCGTCGTCGCCTTCGTCCTAGCTCAGTTCGCCCTCGGCCTCCTCCACCACCAGG AGCACCGCAAGACCCAGGCACCTACCAGGTACAGCAAGGTGCACGTCTGGCTGGGAAGGCTCATCATCTTCCTCG GCACCCTCAACGCCTTCTTGTACGTCCGGTCCTGGACCGACCCCCTCTCTCCTCCCCAACCCCACGCGCTGACCG CCCGCCCTCGCAGCGGCTTTACCTTTGCCCTCAACCGCAAGGTGGGCATGGCGCTGGCCGGCCTCATCATCCTCG GCGCCTTCGCCCTCATGTTCTTCTCCGTCGGGCGGCAATGGCTTGCCAAGAAGAACCAGCGCCGTGACGCCACCA ATCCGCGCCACGGCGCGCCTGCGGGGTACCAACCGCAGCCGTGGCGCGAGCCTGGCCAGGGCCCCGGCCCGTCGG GCATGCCCTATCCGTCCGAGCCGCCGCCGGGGTACGAGCCGCCATCGCAGCAGATTGGCCTGCAGCCCGTATCGA CGTCGCCCGCCGCGGCCTCGCCCTGGAAGAGCTCCGATGCCAAGGACTTCGAGGACGACCCCGCTCTCGGGAGCA CGCATCGGCCGCGAGAGTTTGCGTAA |