Protein ID | Hirsu2|3534 |
Gene name | |
Location | Contig_193:8622..10734 |
Strand | - |
Gene length (bp) | 2112 |
Transcript length (bp) | 2034 |
Coding sequence length (bp) | 2034 |
Protein length (aa) | 678 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11500 | Cut12 | Cut12 conserved domain | 1.5E-41 | 126 | 248 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal | 0.5946 | 0.4496 | 0.1308 | 0.0821 | 0.1246 | 0.0151 | 0.0841 | 0.0716 | 0.3108 | 0.0379 |
Orthofinder run ID | 4 |
Orthogroup | 2458 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3534 MLGWMLKRGENAPDADAEDTTQLDQPDTPAPVFAARALKSALFGTPAPASDETRNQQNNRVSKRTASKAENASGT PSKLPGILLTPGTGTSRRKRVSFGYDVVGAAAKPGTGNDTAAARAGDGSRHQSANEQEEESGKGALANDSEGEWE EADDDEFGHDITLDLNEPHSQSGRFWKGEFEKYHQEAKAEMEKLLKYKQLAKSYARQKDSEAIHLAERLRDEQQK VIKMEKRIAENASHIVSRHRESSDTEHAELLAKLTRQTALAAQYRHRVQELENDLGDLMRQKEGASEGASRRRRT AAPASPMTQKTLLDTQRELRRARSQLRELDSLREEVSSLKARLKVAESQASRHAKEDTSSTEGNRARTLRTQLEQ ARGECATKDEELRQLKSDFEEFRKESETHEADTKAVLERAHAKISDLKKELKMLKAAGSDQQRPGGSGAEHEPAH GTVAARSAKRHEVAGRVSRSTDGDWRRHVAPDVDEQALSSTMARAQPRDEADSAAKPAAVALTERTNLGKPRWQP FVPRSPRNRAYLDNDAARRVREGAGPEDTAAPSLPVSAGPTADDEAQIDILRRIASRSGKADNKTRSSGPPPEDT AAPSLPVSTGPVSTNEQAQIDILRRIVSRSGQTGNKTRSSKLPPERRAAALARIEKRLAEKKRAPRRQGHDKENM RP* |
Coding | >Hirsu2|3534 ATGCTCGGGTGGATGTTGAAGCGCGGCGAAAACGCGCCAGACGCGGATGCCGAAGACACGACCCAACTTGATCAG CCCGACACACCTGCACCCGTGTTCGCGGCCCGGGCGCTCAAGAGCGCGCTCTTCGGGACACCGGCACCAGCAAGC GACGAGACTCGAAACCAGCAAAACAACAGAGTAAGCAAGAGGACGGCGTCCAAGGCAGAAAACGCCTCGGGAACG CCGTCAAAGCTACCTGGCATTCTTCTCACACCCGGCACCGGCACCTCGCGCCGAAAGCGTGTCTCCTTCGGCTAC GACGTCGTCGGCGCTGCCGCCAAGCCCGGGACCGGCAACGACACGGCAGCAGCAAGGGCCGGCGATGGATCCCGG CACCAGTCGGCCAACGAACAGGAAGAAGAAAGCGGAAAAGGCGCGCTCGCCAACGACTCCGAGGGCGAATGGGAA GAGGCCGACGACGACGAATTTGGCCATGACATCACCTTGGACCTCAATGAGCCGCACTCCCAGTCCGGGCGCTTC TGGAAAGGAGAGTTTGAGAAGTACCACCAAGAGGCCAAGGCAGAGATGGAGAAATTGCTCAAGTATAAGCAACTG GCAAAATCCTATGCCCGGCAAAAGGACTCGGAAGCCATCCACCTCGCCGAGCGGCTCCGGGACGAGCAGCAAAAG GTCATCAAGATGGAGAAGAGGATAGCAGAGAACGCGTCCCACATCGTCTCGAGGCATCGCGAGTCCTCGGATACC GAACACGCCGAGCTGCTCGCCAAGCTCACGAGGCAGACCGCGCTCGCGGCCCAGTACCGCCACCGAGTCCAGGAG CTGGAAAACGACCTCGGCGACCTGATGCGCCAAAAGGAAGGGGCTTCGGAAGGCGCGAGCCGGCGGAGGCGGACG GCGGCGCCGGCATCGCCGATGACGCAGAAGACGCTACTGGACACTCAACGCGAGCTTCGACGAGCCCGGAGCCAG CTGAGAGAGCTCGATTCGCTCCGCGAGGAAGTCTCGTCTCTGAAAGCTCGCCTCAAGGTCGCAGAGTCCCAGGCG AGCAGGCACGCAAAGGAGGACACGAGCTCCACGGAAGGAAACAGGGCTCGGACCCTGAGGACTCAGCTCGAACAG GCGCGAGGAGAGTGCGCGACGAAGGACGAGGAGTTACGGCAGCTGAAGAGCGACTTTGAGGAGTTCAGGAAGGAG AGCGAGACGCACGAGGCGGACACCAAGGCGGTTCTGGAGCGAGCCCACGCGAAGATATCCGACCTGAAAAAGGAA CTCAAGATGCTGAAGGCTGCCGGGTCCGATCAGCAGCGACCCGGCGGGTCCGGAGCCGAGCACGAACCGGCCCAC GGTACCGTCGCCGCTCGGAGTGCAAAGCGTCACGAGGTTGCCGGAAGAGTGAGCAGGTCTACGGATGGGGACTGG CGGCGGCACGTCGCGCCCGACGTGGACGAACAGGCCCTGTCGTCGACGATGGCGCGAGCCCAGCCCCGCGACGAG GCGGATTCCGCGGCGAAGCCAGCTGCGGTCGCCCTGACGGAGAGGACGAACCTCGGGAAGCCTAGGTGGCAGCCC TTCGTACCCCGGTCGCCGAGGAACAGAGCCTACCTCGACAACGACGCCGCGAGACGTGTGCGCGAAGGAGCCGGG CCCGAGGATACTGCAGCGCCGAGCCTGCCGGTCTCGGCCGGGCCAACGGCGGACGATGAGGCACAAATCGATATC CTGCGCCGCATCGCCAGTCGCTCGGGGAAGGCCGACAACAAGACGCGCAGCAGCGGGCCCCCTCCCGAGGATACT GCAGCGCCGAGTTTGCCGGTCTCGACCGGGCCAGTGTCGACGAACGAACAGGCACAAATCGACATCCTGCGCCGC ATCGTCAGCCGCTCAGGGCAGACCGGCAACAAGACGCGCAGCAGCAAGCTCCCGCCCGAGCGGCGTGCGGCGGCG CTCGCGCGGATCGAGAAGCGACTGGCGGAGAAGAAACGGGCACCGAGACGCCAAGGACACGACAAGGAAAACATG CGGCCATGA |
Transcript | >Hirsu2|3534 ATGCTCGGGTGGATGTTGAAGCGCGGCGAAAACGCGCCAGACGCGGATGCCGAAGACACGACCCAACTTGATCAG CCCGACACACCTGCACCCGTGTTCGCGGCCCGGGCGCTCAAGAGCGCGCTCTTCGGGACACCGGCACCAGCAAGC GACGAGACTCGAAACCAGCAAAACAACAGAGTAAGCAAGAGGACGGCGTCCAAGGCAGAAAACGCCTCGGGAACG CCGTCAAAGCTACCTGGCATTCTTCTCACACCCGGCACCGGCACCTCGCGCCGAAAGCGTGTCTCCTTCGGCTAC GACGTCGTCGGCGCTGCCGCCAAGCCCGGGACCGGCAACGACACGGCAGCAGCAAGGGCCGGCGATGGATCCCGG CACCAGTCGGCCAACGAACAGGAAGAAGAAAGCGGAAAAGGCGCGCTCGCCAACGACTCCGAGGGCGAATGGGAA GAGGCCGACGACGACGAATTTGGCCATGACATCACCTTGGACCTCAATGAGCCGCACTCCCAGTCCGGGCGCTTC TGGAAAGGAGAGTTTGAGAAGTACCACCAAGAGGCCAAGGCAGAGATGGAGAAATTGCTCAAGTATAAGCAACTG GCAAAATCCTATGCCCGGCAAAAGGACTCGGAAGCCATCCACCTCGCCGAGCGGCTCCGGGACGAGCAGCAAAAG GTCATCAAGATGGAGAAGAGGATAGCAGAGAACGCGTCCCACATCGTCTCGAGGCATCGCGAGTCCTCGGATACC GAACACGCCGAGCTGCTCGCCAAGCTCACGAGGCAGACCGCGCTCGCGGCCCAGTACCGCCACCGAGTCCAGGAG CTGGAAAACGACCTCGGCGACCTGATGCGCCAAAAGGAAGGGGCTTCGGAAGGCGCGAGCCGGCGGAGGCGGACG GCGGCGCCGGCATCGCCGATGACGCAGAAGACGCTACTGGACACTCAACGCGAGCTTCGACGAGCCCGGAGCCAG CTGAGAGAGCTCGATTCGCTCCGCGAGGAAGTCTCGTCTCTGAAAGCTCGCCTCAAGGTCGCAGAGTCCCAGGCG AGCAGGCACGCAAAGGAGGACACGAGCTCCACGGAAGGAAACAGGGCTCGGACCCTGAGGACTCAGCTCGAACAG GCGCGAGGAGAGTGCGCGACGAAGGACGAGGAGTTACGGCAGCTGAAGAGCGACTTTGAGGAGTTCAGGAAGGAG AGCGAGACGCACGAGGCGGACACCAAGGCGGTTCTGGAGCGAGCCCACGCGAAGATATCCGACCTGAAAAAGGAA CTCAAGATGCTGAAGGCTGCCGGGTCCGATCAGCAGCGACCCGGCGGGTCCGGAGCCGAGCACGAACCGGCCCAC GGTACCGTCGCCGCTCGGAGTGCAAAGCGTCACGAGGTTGCCGGAAGAGTGAGCAGGTCTACGGATGGGGACTGG CGGCGGCACGTCGCGCCCGACGTGGACGAACAGGCCCTGTCGTCGACGATGGCGCGAGCCCAGCCCCGCGACGAG GCGGATTCCGCGGCGAAGCCAGCTGCGGTCGCCCTGACGGAGAGGACGAACCTCGGGAAGCCTAGGTGGCAGCCC TTCGTACCCCGGTCGCCGAGGAACAGAGCCTACCTCGACAACGACGCCGCGAGACGTGTGCGCGAAGGAGCCGGG CCCGAGGATACTGCAGCGCCGAGCCTGCCGGTCTCGGCCGGGCCAACGGCGGACGATGAGGCACAAATCGATATC CTGCGCCGCATCGCCAGTCGCTCGGGGAAGGCCGACAACAAGACGCGCAGCAGCGGGCCCCCTCCCGAGGATACT GCAGCGCCGAGTTTGCCGGTCTCGACCGGGCCAGTGTCGACGAACGAACAGGCACAAATCGACATCCTGCGCCGC ATCGTCAGCCGCTCAGGGCAGACCGGCAACAAGACGCGCAGCAGCAAGCTCCCGCCCGAGCGGCGTGCGGCGGCG CTCGCGCGGATCGAGAAGCGACTGGCGGAGAAGAAACGGGCACCGAGACGCCAAGGACACGACAAGGAAAACATG CGGCCATGA |
Gene | >Hirsu2|3534 ATGCTCGGGTGGATGTTGAAGCGCGGCGAAAACGCGCCAGACGCGGATGCCGAAGGTATCCGCTCCCTATTCCTC CACACGATTGCAAGCTGCCGCAGTGCGCCAGAGAAGCTAACATTGATCATTGGCATAGACACGACCCAACTTGAT CAGCCCGACACACCTGCACCCGTGTTCGCGGCCCGGGCGCTCAAGAGCGCGCTCTTCGGGACACCGGCACCAGCA AGCGACGAGACTCGAAACCAGCAAAACAACAGAGTAAGCAAGAGGACGGCGTCCAAGGCAGAAAACGCCTCGGGA ACGCCGTCAAAGCTACCTGGCATTCTTCTCACACCCGGCACCGGCACCTCGCGCCGAAAGCGTGTCTCCTTCGGC TACGACGTCGTCGGCGCTGCCGCCAAGCCCGGGACCGGCAACGACACGGCAGCAGCAAGGGCCGGCGATGGATCC CGGCACCAGTCGGCCAACGAACAGGAAGAAGAAAGCGGAAAAGGCGCGCTCGCCAACGACTCCGAGGGCGAATGG GAAGAGGCCGACGACGACGAATTTGGCCATGACATCACCTTGGACCTCAATGAGCCGCACTCCCAGTCCGGGCGC TTCTGGAAAGGAGAGTTTGAGAAGTACCACCAAGAGGCCAAGGCAGAGATGGAGAAATTGCTCAAGTATAAGCAA CTGGCAAAATCCTATGCCCGGCAAAAGGACTCGGAAGCCATCCACCTCGCCGAGCGGCTCCGGGACGAGCAGCAA AAGGTCATCAAGATGGAGAAGAGGATAGCAGAGAACGCGTCCCACATCGTCTCGAGGCATCGCGAGTCCTCGGAT ACCGAACACGCCGAGCTGCTCGCCAAGCTCACGAGGCAGACCGCGCTCGCGGCCCAGTACCGCCACCGAGTCCAG GAGCTGGAAAACGACCTCGGCGACCTGATGCGCCAAAAGGAAGGGGCTTCGGAAGGCGCGAGCCGGCGGAGGCGG ACGGCGGCGCCGGCATCGCCGATGACGCAGAAGACGCTACTGGACACTCAACGCGAGCTTCGACGAGCCCGGAGC CAGCTGAGAGAGCTCGATTCGCTCCGCGAGGAAGTCTCGTCTCTGAAAGCTCGCCTCAAGGTCGCAGAGTCCCAG GCGAGCAGGCACGCAAAGGAGGACACGAGCTCCACGGAAGGAAACAGGGCTCGGACCCTGAGGACTCAGCTCGAA CAGGCGCGAGGAGAGTGCGCGACGAAGGACGAGGAGTTACGGCAGCTGAAGAGCGACTTTGAGGAGTTCAGGAAG GAGAGCGAGACGCACGAGGCGGACACCAAGGCGGTTCTGGAGCGAGCCCACGCGAAGATATCCGACCTGAAAAAG GAACTCAAGATGCTGAAGGCTGCCGGGTCCGATCAGCAGCGACCCGGCGGGTCCGGAGCCGAGCACGAACCGGCC CACGGTACCGTCGCCGCTCGGAGTGCAAAGCGTCACGAGGTTGCCGGAAGAGTGAGCAGGTCTACGGATGGGGAC TGGCGGCGGCACGTCGCGCCCGACGTGGACGAACAGGCCCTGTCGTCGACGATGGCGCGAGCCCAGCCCCGCGAC GAGGCGGATTCCGCGGCGAAGCCAGCTGCGGTCGCCCTGACGGAGAGGACGAACCTCGGGAAGCCTAGGTGGCAG CCCTTCGTACCCCGGTCGCCGAGGAACAGAGCCTACCTCGACAACGACGCCGCGAGACGTGTGCGCGAAGGAGCC GGGCCCGAGGATACTGCAGCGCCGAGCCTGCCGGTCTCGGCCGGGCCAACGGCGGACGATGAGGCACAAATCGAT ATCCTGCGCCGCATCGCCAGTCGCTCGGGGAAGGCCGACAACAAGACGCGCAGCAGCGGGCCCCCTCCCGAGGAT ACTGCAGCGCCGAGTTTGCCGGTCTCGACCGGGCCAGTGTCGACGAACGAACAGGCACAAATCGACATCCTGCGC CGCATCGTCAGCCGCTCAGGGCAGACCGGCAACAAGACGCGCAGCAGCAAGCTCCCGCCCGAGCGGCGTGCGGCG GCGCTCGCGCGGATCGAGAAGCGACTGGCGGAGAAGAAACGGGCACCGAGACGCCAAGGACACGACAAGGAAAAC ATGCGGCCATGA |