Protein ID | Hirsu2|3533 |
Gene name | |
Location | Contig_193:7269..8238 |
Strand | - |
Gene length (bp) | 969 |
Transcript length (bp) | 969 |
Coding sequence length (bp) | 969 |
Protein length (aa) | 323 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01730 | UreF | UreF | 4.8E-15 | 73 | 276 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14016|UREF_SCHPO | Uncharacterized urease accessory protein UreF-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.13 PE=3 SV=1 | 33 | 129 | 2.0E-14 |
sp|O14016|UREF_SCHPO | Uncharacterized urease accessory protein UreF-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.13 PE=3 SV=1 | 223 | 322 | 1.0E-13 |
sp|Q9XHZ3|UREF_ARATH | Urease accessory protein F OS=Arabidopsis thaliana GN=UREF PE=2 SV=1 | 171 | 322 | 7.0E-09 |
sp|Q0E3L5|UREF_ORYSJ | Urease accessory protein F OS=Oryza sativa subsp. japonica GN=UREF PE=2 SV=2 | 221 | 320 | 7.0E-09 |
sp|E0ZS46|UREF_ORYSI | Urease accessory protein F OS=Oryza sativa subsp. indica GN=UREF PE=2 SV=1 | 221 | 320 | 7.0E-09 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14016|UREF_SCHPO | Uncharacterized urease accessory protein UreF-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.13 PE=3 SV=1 | 33 | 129 | 2.0E-14 |
sp|O14016|UREF_SCHPO | Uncharacterized urease accessory protein UreF-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29A4.13 PE=3 SV=1 | 223 | 322 | 1.0E-13 |
sp|Q9XHZ3|UREF_ARATH | Urease accessory protein F OS=Arabidopsis thaliana GN=UREF PE=2 SV=1 | 171 | 322 | 7.0E-09 |
sp|Q0E3L5|UREF_ORYSJ | Urease accessory protein F OS=Oryza sativa subsp. japonica GN=UREF PE=2 SV=2 | 221 | 320 | 7.0E-09 |
sp|E0ZS46|UREF_ORYSI | Urease accessory protein F OS=Oryza sativa subsp. indica GN=UREF PE=2 SV=1 | 221 | 320 | 7.0E-09 |
sp|Q0BQ38|UREF_GRABC | Urease accessory protein UreF OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ureF PE=3 SV=1 | 229 | 322 | 1.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016151 | nickel cation binding | Yes |
GO:0006807 | nitrogen compound metabolic process | Yes |
GO:0008152 | metabolic process | No |
GO:0046872 | metal ion binding | No |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0003674 | molecular_function | No |
GO:0008150 | biological_process | No |
GO:0043169 | cation binding | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.6766 | 0.3712 | 0.0793 | 0.026 | 0.218 | 0.0287 | 0.1458 | 0.1177 | 0.1448 | 0.0993 |
Orthofinder run ID | 4 |
Orthogroup | 5144 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3533 MEEAALQRQIAELSARLARLRGAAPPPAPPSPHFLLLLADSALPIGSFAFSSGLESCLAHAAAWPAFFPLSMAAL ASAALPFVLAAHRRPCALVALDDEADAAAVCAVARRASVAQGRALLGVWERSFAPALRDSGAASCSSSAAASATS SSSTTASATSSSSAAASATSSSSTTASAASSSSAASSASSPEAAASILAHFAALLRDSSSASAADDVPPPVAAHL APLFGAVCAFAGLDLRQAAYVFMLSHAKALVSAAVRASVFGPYHGHRLLAGHQLRHMIDALVDREWDTPSDEAGQ SVPIMDLWVGRHELLYSRIFNS* |
Coding | >Hirsu2|3533 ATGGAGGAAGCGGCGCTGCAGAGGCAGATAGCCGAGCTGTCGGCGCGGCTGGCGCGGCTGCGCGGCGCGGCCCCA CCGCCGGCCCCGCCGTCGCCGCACTTCCTACTGCTGCTGGCCGACTCGGCCCTGCCGATCGGCTCCTTCGCCTTC AGCAGCGGGCTGGAGTCGTGCCTGGCGCACGCGGCCGCCTGGCCGGCCTTCTTCCCGCTGTCGATGGCGGCCCTG GCGTCGGCCGCGCTGCCGTTCGTGCTGGCTGCCCACCGCCGGCCCTGCGCGCTGGTGGCGCTCGACGACGAGGCT GACGCGGCGGCTGTGTGTGCGGTTGCGCGCCGTGCCAGCGTCGCGCAGGGCCGCGCGCTGCTCGGCGTGTGGGAG AGGTCGTTTGCGCCCGCTCTGCGGGACTCCGGCGCCGCGTCTTGCTCGTCTTCTGCCGCCGCCTCTGCTACGTCC TCGTCTTCTACCACCGCCTCTGCTACGTCCTCGTCTTCTGCCGCCGCCTCTGCTACGTCCTCGTCTTCTACCACC GCCTCTGCTGCGTCTTCTTCTTCTGCCGCCTCCTCCGCTTCCTCGCCCGAGGCCGCGGCGTCCATCCTCGCACAC TTCGCCGCCCTGCTCCGGGACTCGTCGTCAGCATCGGCGGCCGACGACGTCCCGCCCCCCGTCGCGGCCCACCTG GCGCCGCTGTTCGGCGCCGTCTGCGCCTTCGCCGGCCTCGACCTCCGCCAGGCCGCCTACGTCTTCATGCTCAGC CACGCCAAGGCCCTGGTCTCGGCCGCCGTCCGGGCCAGCGTCTTCGGCCCCTACCACGGCCACCGGCTCCTGGCC GGCCACCAGCTGCGGCACATGATCGACGCCCTCGTCGACCGCGAGTGGGACACGCCGAGCGACGAGGCCGGCCAG AGCGTCCCCATTATGGACCTGTGGGTCGGGCGGCACGAGCTCCTGTACTCGAGGATCTTCAACAGCTGA |
Transcript | >Hirsu2|3533 ATGGAGGAAGCGGCGCTGCAGAGGCAGATAGCCGAGCTGTCGGCGCGGCTGGCGCGGCTGCGCGGCGCGGCCCCA CCGCCGGCCCCGCCGTCGCCGCACTTCCTACTGCTGCTGGCCGACTCGGCCCTGCCGATCGGCTCCTTCGCCTTC AGCAGCGGGCTGGAGTCGTGCCTGGCGCACGCGGCCGCCTGGCCGGCCTTCTTCCCGCTGTCGATGGCGGCCCTG GCGTCGGCCGCGCTGCCGTTCGTGCTGGCTGCCCACCGCCGGCCCTGCGCGCTGGTGGCGCTCGACGACGAGGCT GACGCGGCGGCTGTGTGTGCGGTTGCGCGCCGTGCCAGCGTCGCGCAGGGCCGCGCGCTGCTCGGCGTGTGGGAG AGGTCGTTTGCGCCCGCTCTGCGGGACTCCGGCGCCGCGTCTTGCTCGTCTTCTGCCGCCGCCTCTGCTACGTCC TCGTCTTCTACCACCGCCTCTGCTACGTCCTCGTCTTCTGCCGCCGCCTCTGCTACGTCCTCGTCTTCTACCACC GCCTCTGCTGCGTCTTCTTCTTCTGCCGCCTCCTCCGCTTCCTCGCCCGAGGCCGCGGCGTCCATCCTCGCACAC TTCGCCGCCCTGCTCCGGGACTCGTCGTCAGCATCGGCGGCCGACGACGTCCCGCCCCCCGTCGCGGCCCACCTG GCGCCGCTGTTCGGCGCCGTCTGCGCCTTCGCCGGCCTCGACCTCCGCCAGGCCGCCTACGTCTTCATGCTCAGC CACGCCAAGGCCCTGGTCTCGGCCGCCGTCCGGGCCAGCGTCTTCGGCCCCTACCACGGCCACCGGCTCCTGGCC GGCCACCAGCTGCGGCACATGATCGACGCCCTCGTCGACCGCGAGTGGGACACGCCGAGCGACGAGGCCGGCCAG AGCGTCCCCATTATGGACCTGTGGGTCGGGCGGCACGAGCTCCTGTACTCGAGGATCTTCAACAGCTGA |
Gene | >Hirsu2|3533 ATGGAGGAAGCGGCGCTGCAGAGGCAGATAGCCGAGCTGTCGGCGCGGCTGGCGCGGCTGCGCGGCGCGGCCCCA CCGCCGGCCCCGCCGTCGCCGCACTTCCTACTGCTGCTGGCCGACTCGGCCCTGCCGATCGGCTCCTTCGCCTTC AGCAGCGGGCTGGAGTCGTGCCTGGCGCACGCGGCCGCCTGGCCGGCCTTCTTCCCGCTGTCGATGGCGGCCCTG GCGTCGGCCGCGCTGCCGTTCGTGCTGGCTGCCCACCGCCGGCCCTGCGCGCTGGTGGCGCTCGACGACGAGGCT GACGCGGCGGCTGTGTGTGCGGTTGCGCGCCGTGCCAGCGTCGCGCAGGGCCGCGCGCTGCTCGGCGTGTGGGAG AGGTCGTTTGCGCCCGCTCTGCGGGACTCCGGCGCCGCGTCTTGCTCGTCTTCTGCCGCCGCCTCTGCTACGTCC TCGTCTTCTACCACCGCCTCTGCTACGTCCTCGTCTTCTGCCGCCGCCTCTGCTACGTCCTCGTCTTCTACCACC GCCTCTGCTGCGTCTTCTTCTTCTGCCGCCTCCTCCGCTTCCTCGCCCGAGGCCGCGGCGTCCATCCTCGCACAC TTCGCCGCCCTGCTCCGGGACTCGTCGTCAGCATCGGCGGCCGACGACGTCCCGCCCCCCGTCGCGGCCCACCTG GCGCCGCTGTTCGGCGCCGTCTGCGCCTTCGCCGGCCTCGACCTCCGCCAGGCCGCCTACGTCTTCATGCTCAGC CACGCCAAGGCCCTGGTCTCGGCCGCCGTCCGGGCCAGCGTCTTCGGCCCCTACCACGGCCACCGGCTCCTGGCC GGCCACCAGCTGCGGCACATGATCGACGCCCTCGTCGACCGCGAGTGGGACACGCCGAGCGACGAGGCCGGCCAG AGCGTCCCCATTATGGACCTGTGGGTCGGGCGGCACGAGCTCCTGTACTCGAGGATCTTCAACAGCTGA |