Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3532
Gene name
LocationContig_193:5897..7168
Strand+
Gene length (bp)1271
Transcript length (bp)1206
Coding sequence length (bp)1206
Protein length (aa) 402

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16131 Torus Torus domain 2.9E-41 45 150
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-07 187 237

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q51TF7|CWC2_MAGO7 Pre-mRNA-splicing factor CWC2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CWC2 PE=3 SV=2 48 399 0.0E+00
sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc2 PE=3 SV=1 48 399 7.0E-172
sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc2 PE=3 SV=1 48 399 4.0E-165
sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans GN=CWC2 PE=3 SV=1 48 399 8.0E-158
sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf2 PE=1 SV=2 47 399 4.0E-119
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Swissprot ID Swissprot Description Start End E-value
sp|Q51TF7|CWC2_MAGO7 Pre-mRNA-splicing factor CWC2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CWC2 PE=3 SV=2 48 399 0.0E+00
sp|Q5BB35|CWC2_EMENI Pre-mRNA-splicing factor cwc2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc2 PE=3 SV=1 48 399 7.0E-172
sp|Q4WU07|CWC2_ASPFU Pre-mRNA-splicing factor cwc2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc2 PE=3 SV=1 48 399 4.0E-165
sp|Q6T412|CWC2_LEPMC Pre-mRNA-splicing factor CWC2 OS=Leptosphaeria maculans GN=CWC2 PE=3 SV=1 48 399 8.0E-158
sp|P87126|CWC2_SCHPO Pre-mRNA-splicing factor cwf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf2 PE=1 SV=2 47 399 4.0E-119
sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC2 PE=3 SV=1 47 311 2.0E-113
sp|Q6BLU8|CWC2_DEBHA Pre-mRNA-splicing factor CWC2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC2 PE=3 SV=2 44 282 2.0E-84
sp|P0CR14|CWC2_CRYNJ Pre-mRNA-splicing factor CWC2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC2 PE=3 SV=1 43 276 5.0E-81
sp|P0CR15|CWC2_CRYNB Pre-mRNA-splicing factor CWC2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC2 PE=3 SV=1 43 276 5.0E-81
sp|Q59W50|CWC2_CANAL Pre-mRNA-splicing factor CWC2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC2 PE=3 SV=1 47 399 6.0E-63
sp|Q4PA86|CWC2_USTMA Pre-mRNA-splicing factor CWC2 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC2 PE=3 SV=2 47 400 5.0E-62
sp|Q6CT50|CWC2_KLULA Pre-mRNA-splicing factor CWC2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CWC2 PE=3 SV=1 45 292 1.0E-54
sp|Q54PH5|CWC2_DICDI Pre-mRNA-splicing factor cwc2 OS=Dictyostelium discoideum GN=cwc2 PE=3 SV=1 47 271 7.0E-52
sp|Q12046|CWC2_YEAST Pre-mRNA-splicing factor CWC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC2 PE=1 SV=1 47 254 1.0E-49
sp|Q6FNR8|CWC2_CANGA Pre-mRNA-splicing factor CWC2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CWC2 PE=3 SV=1 45 272 4.0E-39
sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis thaliana GN=At2g29580 PE=2 SV=1 111 284 3.0E-11
sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis thaliana GN=At1g07360 PE=2 SV=1 111 248 8.0E-10
sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1 85 283 1.0E-08
sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1 111 304 3.0E-08
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.2848 0.8473 0.0403 0.0246 0.0425 0.0037 0.0328 0.0085 0.0358 0.0023

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2457
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|1337
Ophiocordyceps australis map64 (Brazil) OphauB2|6012
Ophiocordyceps camponoti-floridani Ophcf2|06802
Ophiocordyceps camponoti-rufipedis Ophun1|1124
Ophiocordyceps kimflemingae Ophio5|4128
Ophiocordyceps subramaniannii Hirsu2|3532 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3532
MAEVEGQTATAAAAHPGGDDLALATTTDIAAPAEKKTVKKIVRRKRRPARAQVDADSISSEPPPQTGTIFNIWYN
KWSGGDRESYQQTHAKGRCNIATDSGYTKADNSAGSYFCARFARGLCPRGQDCDYLHRLPGQFDIFSPNVDCFGR
EKFADYRDDMGGVGSFMRQNRTIYVGRIHVTDDIEEIVARHFAEWGQIERIRVLNSRGVGFITYTNEANAQFARE
AMANQSLDHDEILNVRWATADPNPMAQKREARRIEEQAAAAIRKALPAEFVAEIEGKDPEARKRRRIESSYGLEG
YQAPDEVHFARGAQAVNPIGREGYATEQQQPLAIEGQQPSTESAAQPEQTSDQGGGIFSSSTLAALSRAKVTVAS
KPKAATGGAATGPLVGYGSDSDDDDE*
Coding >Hirsu2|3532
ATGGCCGAGGTCGAAGGCCAGACGGCTACGGCCGCCGCCGCTCACCCCGGTGGCGACGACCTGGCTCTTGCGACG
ACCACCGACATCGCGGCGCCTGCGGAGAAGAAGACGGTCAAGAAGATCGTTCGCAGAAAGAGACGTCCGGCGCGA
GCACAGGTCGACGCGGACAGCATAAGCTCGGAGCCCCCGCCTCAGACAGGCACGATATTCAACATTTGGTACAAC
AAGTGGTCCGGGGGCGACCGCGAGTCGTACCAGCAAACCCACGCCAAGGGGCGCTGCAACATCGCCACAGACAGC
GGCTACACCAAGGCCGACAACTCTGCCGGGAGCTACTTCTGCGCGCGGTTCGCGCGAGGTCTCTGCCCGAGGGGC
CAAGACTGTGACTACCTCCACCGGCTCCCCGGCCAGTTCGATATCTTCAGCCCCAACGTCGACTGCTTCGGCCGG
GAAAAGTTTGCCGACTACAGAGACGACATGGGCGGCGTTGGCAGCTTCATGAGGCAGAACAGGACCATCTATGTC
GGGCGCATACACGTGACGGACGATATCGAGGAGATTGTGGCGCGTCATTTCGCCGAATGGGGGCAGATCGAACGC
ATACGCGTATTAAACTCGAGAGGAGTGGGCTTCATCACCTACACCAACGAGGCGAACGCCCAGTTTGCGCGGGAA
GCGATGGCGAATCAGTCCTTGGACCACGACGAAATCCTCAACGTGCGATGGGCGACGGCCGACCCCAACCCCATG
GCGCAGAAGCGCGAAGCGCGTCGGATCGAGGAACAGGCGGCCGCGGCCATCCGAAAGGCTCTACCCGCAGAGTTC
GTGGCAGAGATCGAGGGCAAGGACCCCGAGGCGAGGAAGCGGAGGCGGATAGAGAGCAGCTACGGCCTGGAGGGC
TACCAGGCGCCGGACGAGGTGCACTTCGCCCGGGGCGCCCAGGCCGTGAACCCCATCGGGCGCGAGGGCTACGCG
ACGGAGCAACAACAGCCGTTGGCGATCGAGGGCCAGCAGCCGTCGACAGAAAGCGCGGCGCAGCCCGAGCAGACG
TCGGACCAGGGCGGTGGAATCTTCTCAAGCAGCACTCTCGCGGCCCTGAGCAGGGCAAAGGTGACGGTGGCATCC
AAGCCAAAAGCGGCGACGGGAGGGGCGGCGACAGGGCCGCTGGTGGGCTACGGCAGCGACAGCGACGACGACGAC
GAGTGA
Transcript >Hirsu2|3532
ATGGCCGAGGTCGAAGGCCAGACGGCTACGGCCGCCGCCGCTCACCCCGGTGGCGACGACCTGGCTCTTGCGACG
ACCACCGACATCGCGGCGCCTGCGGAGAAGAAGACGGTCAAGAAGATCGTTCGCAGAAAGAGACGTCCGGCGCGA
GCACAGGTCGACGCGGACAGCATAAGCTCGGAGCCCCCGCCTCAGACAGGCACGATATTCAACATTTGGTACAAC
AAGTGGTCCGGGGGCGACCGCGAGTCGTACCAGCAAACCCACGCCAAGGGGCGCTGCAACATCGCCACAGACAGC
GGCTACACCAAGGCCGACAACTCTGCCGGGAGCTACTTCTGCGCGCGGTTCGCGCGAGGTCTCTGCCCGAGGGGC
CAAGACTGTGACTACCTCCACCGGCTCCCCGGCCAGTTCGATATCTTCAGCCCCAACGTCGACTGCTTCGGCCGG
GAAAAGTTTGCCGACTACAGAGACGACATGGGCGGCGTTGGCAGCTTCATGAGGCAGAACAGGACCATCTATGTC
GGGCGCATACACGTGACGGACGATATCGAGGAGATTGTGGCGCGTCATTTCGCCGAATGGGGGCAGATCGAACGC
ATACGCGTATTAAACTCGAGAGGAGTGGGCTTCATCACCTACACCAACGAGGCGAACGCCCAGTTTGCGCGGGAA
GCGATGGCGAATCAGTCCTTGGACCACGACGAAATCCTCAACGTGCGATGGGCGACGGCCGACCCCAACCCCATG
GCGCAGAAGCGCGAAGCGCGTCGGATCGAGGAACAGGCGGCCGCGGCCATCCGAAAGGCTCTACCCGCAGAGTTC
GTGGCAGAGATCGAGGGCAAGGACCCCGAGGCGAGGAAGCGGAGGCGGATAGAGAGCAGCTACGGCCTGGAGGGC
TACCAGGCGCCGGACGAGGTGCACTTCGCCCGGGGCGCCCAGGCCGTGAACCCCATCGGGCGCGAGGGCTACGCG
ACGGAGCAACAACAGCCGTTGGCGATCGAGGGCCAGCAGCCGTCGACAGAAAGCGCGGCGCAGCCCGAGCAGACG
TCGGACCAGGGCGGTGGAATCTTCTCAAGCAGCACTCTCGCGGCCCTGAGCAGGGCAAAGGTGACGGTGGCATCC
AAGCCAAAAGCGGCGACGGGAGGGGCGGCGACAGGGCCGCTGGTGGGCTACGGCAGCGACAGCGACGACGACGAC
GAGTGA
Gene >Hirsu2|3532
ATGGCCGAGGTCGAAGGCCAGACGGCTACGGCCGCCGCCGCTCACCCCGGTGGCGACGACCTGGCTCTTGCGACG
ACCACCGACATCGCGGCGCCTGCGGAGAAGAAGACGGTCAAGAAGATCGTTCGCAGAAAGAGACGTCCGGCGCGA
GCACAGGTCGACGCGGACAGCATAAGCTCGGAGCCCCCGCCTCAGACAGGCACGATATTCAACATTTGGTACAAC
AAGTGGTCCGGGGGCGACCGCGAGTCGTACCAGCAAACCCACGCCAAGGGGCGCTGCAACATCGCCACAGACAGC
GGCTACACCAAGGCCGACAACTCTGCCGGGAGCTACTTCTGCGCGCGGTTCGCGCGAGGTCTCTGCCCGAGGGGC
CAAGACTGTGACTACCTCCACCGGCTCCCCGGCCAGTTCGATATCTTCAGCCCCAACGTCGACTGCTTCGGCCGG
GAAAAGTTTGCCGACTACAGAGACGACATGGGCGGCGTTGGCAGCTTCATGAGGCAGAACAGGACCATCTATGTC
GGGCGCATACACGTGACGGACGATATCGAGGAGATTGTGGCGCGTCATTTCGCCGAATGGGGGCAGATCGAACGC
AGTGAGTAACGCGCACGAACCCGCGATGCCGGCACCCCTCCCCCCGATACTGACCCGCGCGCGCAGTACGCGTAT
TAAACTCGAGAGGAGTGGGCTTCATCACCTACACCAACGAGGCGAACGCCCAGTTTGCGCGGGAAGCGATGGCGA
ATCAGTCCTTGGACCACGACGAAATCCTCAACGTGCGATGGGCGACGGCCGACCCCAACCCCATGGCGCAGAAGC
GCGAAGCGCGTCGGATCGAGGAACAGGCGGCCGCGGCCATCCGAAAGGCTCTACCCGCAGAGTTCGTGGCAGAGA
TCGAGGGCAAGGACCCCGAGGCGAGGAAGCGGAGGCGGATAGAGAGCAGCTACGGCCTGGAGGGCTACCAGGCGC
CGGACGAGGTGCACTTCGCCCGGGGCGCCCAGGCCGTGAACCCCATCGGGCGCGAGGGCTACGCGACGGAGCAAC
AACAGCCGTTGGCGATCGAGGGCCAGCAGCCGTCGACAGAAAGCGCGGCGCAGCCCGAGCAGACGTCGGACCAGG
GCGGTGGAATCTTCTCAAGCAGCACTCTCGCGGCCCTGAGCAGGGCAAAGGTGACGGTGGCATCCAAGCCAAAAG
CGGCGACGGGAGGGGCGGCGACAGGGCCGCTGGTGGGCTACGGCAGCGACAGCGACGACGACGACGAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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