Protein ID | Hirsu2|3530 |
Gene name | |
Location | Contig_193:3041..3517 |
Strand | + |
Gene length (bp) | 476 |
Transcript length (bp) | 303 |
Coding sequence length (bp) | 303 |
Protein length (aa) | 101 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05032 | Spo12 | Spo12 family | 4.8E-15 | 47 | 79 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal | 0.6562 | 0.3908 | 0.0344 | 0.2089 | 0.2628 | 0.0142 | 0.0305 | 0.0801 | 0.1224 | 0.0286 |
Orthofinder run ID | 4 |
Orthogroup | 2455 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3530 MSSHVLGDKDVNAPVAEQQASADVKSMEYHRQVFQSKMAEEKSGKYVSPSDNIMSPCTAKIHALRNKHAAKVKPK SLFAQASAKKLGGENALGARPVQQP* |
Coding | >Hirsu2|3530 ATGTCGAGCCACGTCCTCGGCGACAAAGACGTCAACGCCCCCGTGGCAGAGCAGCAGGCGTCCGCCGACGTCAAG AGCATGGAGTATCACCGCCAGGTCTTTCAGTCCAAGATGGCCGAGGAAAAATCGGGCAAATATGTCTCGCCGTCC GACAACATCATGAGCCCATGCACGGCCAAGATCCATGCCCTGCGCAATAAGCATGCTGCCAAGGTCAAGCCCAAG TCTCTCTTCGCCCAGGCGAGCGCTAAGAAGCTCGGCGGAGAGAATGCTCTGGGAGCGCGGCCCGTCCAGCAGCCC TGA |
Transcript | >Hirsu2|3530 ATGTCGAGCCACGTCCTCGGCGACAAAGACGTCAACGCCCCCGTGGCAGAGCAGCAGGCGTCCGCCGACGTCAAG AGCATGGAGTATCACCGCCAGGTCTTTCAGTCCAAGATGGCCGAGGAAAAATCGGGCAAATATGTCTCGCCGTCC GACAACATCATGAGCCCATGCACGGCCAAGATCCATGCCCTGCGCAATAAGCATGCTGCCAAGGTCAAGCCCAAG TCTCTCTTCGCCCAGGCGAGCGCTAAGAAGCTCGGCGGAGAGAATGCTCTGGGAGCGCGGCCCGTCCAGCAGCCC TGA |
Gene | >Hirsu2|3530 ATGTCGAGCCACGTCCTCGGCGACAAAGACGTCAACGCCCCCGTGGCAGAGCAGCAGGCGTCCGCCGACGTCAAG AGCATGGAGTATCACCGCCAGGTCTTTCAGTCCAAGATGGCCGAGGAAAAGTAGCCGCTCCCTTCCCCTTGTCTT CCGACACGAGACGGCAAAGTGACGGGCCCAGACTAACGATGCATGCGGAAAAGCAGATCGGGCAAATATGTCTCG CCGTCCGACAACATCATGAGCCCATGCACGGCCAAGATCCATGCCCTGCGCAATAAGCATGCTGCCAAGTCGGTC CTCCCCGTCCCCCGCTCGCGCTTCCTCCCGTCCCTCCGTCCACGTCTTCGACGAGCATCGCTGACAAGCCCCGTC CGCTTCACAGGGTCAAGCCCAAGTCTCTCTTCGCCCAGGCGAGCGCTAAGAAGCTCGGCGGAGAGAATGCTCTGG GAGCGCGGCCCGTCCAGCAGCCCTGA |