© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3525 |
| Gene name | |
| Location | Contig_1928:1136..2333 |
| Strand | - |
| Gene length (bp) | 1197 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1197 |
| Protein length (aa) | 399 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00730 | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein | 9.3E-08 | 184 | 332 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|F4JCQ3|DG783_ARATH | Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 | 97 | 353 | 2.0E-36 |
| sp|Q9WYK0|END3_THEMA | Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 | 182 | 366 | 2.0E-13 |
| sp|Q9SR66|DML2_ARATH | DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 | 192 | 352 | 1.0E-11 |
| sp|Q9SJQ6|ROS1_ARATH | Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 | 214 | 359 | 5.0E-11 |
| sp|Q8LK56|DME_ARATH | Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 | 201 | 362 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|F4JCQ3|DG783_ARATH | Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 | 97 | 353 | 2.0E-36 |
| sp|Q9WYK0|END3_THEMA | Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 | 182 | 366 | 2.0E-13 |
| sp|Q9SR66|DML2_ARATH | DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 | 192 | 352 | 1.0E-11 |
| sp|Q9SJQ6|ROS1_ARATH | Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 | 214 | 359 | 5.0E-11 |
| sp|Q8LK56|DME_ARATH | Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 | 201 | 362 | 2.0E-10 |
| sp|O49498|DML3_ARATH | DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 | 206 | 352 | 2.0E-10 |
| sp|P54137|NTH_CAEEL | Endonuclease III homolog OS=Caenorhabditis elegans GN=nth-1 PE=1 SV=2 | 164 | 396 | 4.0E-09 |
| sp|Q58829|Y1434_METJA | Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1 | 181 | 352 | 9.0E-09 |
| sp|B9DFZ0|NTH2_ARATH | Endonuclease III homolog 2, chloroplastic OS=Arabidopsis thaliana GN=NTH2 PE=2 SV=1 | 17 | 348 | 4.0E-08 |
| sp|Q09907|NTH_SCHPO | Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nth1 PE=1 SV=1 | 135 | 362 | 4.0E-07 |
| sp|Q9SIC4|NTH1_ARATH | Endonuclease III homolog 1, chloroplastic OS=Arabidopsis thaliana GN=NTH1 PE=2 SV=2 | 154 | 347 | 9.0E-07 |
| sp|C8VC05|NTH_EMENI | Endonuclease III homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nth1 PE=3 SV=2 | 262 | 375 | 1.0E-06 |
| sp|Q89AW4|END3_BUCBP | Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=nth PE=3 SV=1 | 278 | 347 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006284 | base-excision repair | Yes |
| GO:0009987 | cellular process | No |
| GO:0050896 | response to stimulus | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006281 | DNA repair | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.1882 | 0.9304 | 0.0812 | 0.0129 | 0.1195 | 0.1463 | 0.0384 | 0.005 | 0.0281 | 0.0024 |
| Orthofinder run ID | 4 |
| Orthogroup | 2454 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3525 MASSPPPPAVERPLRRSARNLKLQADIRTDEALVKQEEEAASSARNLKRPADIKTDEEAPIKREDEAPPAEKRIK RERRTSRSSPDAESGPKPRGGKKQRRGAHKFLTGEDKAAAVRARKLKLFSALSKRSPFPDWGSPRPEECALAHEI LARLEGEPKRAAQVVAPRTSAGCGSSPSVLDALVRTILSQNTSGKNSALAKRRMDEVYGGSDRWEAIVDGGQPKL EVAIRRGGLSVVKSNVILALLRDVRAAHGVYSLDHLFDADDETAMREMLSYRGVGPKTASCVLLFCLQRDSFAVD THVYRLAGILGWRPPTATREETQAHLNLLVPPEEKYPLHVLMIRHGQNCDECRAGGKVRGKCELRNAFPIKPARA TAVEDAKEQEGMKAVKKEEDQPS* |
| Coding | >Hirsu2|3525 ATGGCCAGCTCGCCCCCCCCTCCTGCGGTCGAGCGTCCGCTACGGCGCAGCGCGCGGAATCTGAAGCTCCAGGCC GACATCAGGACGGACGAGGCTCTCGTCAAGCAGGAGGAAGAAGCCGCGAGCAGCGCGCGGAACCTGAAGCGCCCG GCCGACATCAAGACGGACGAGGAGGCTCCCATCAAGCGGGAAGACGAGGCGCCGCCGGCAGAGAAACGGATCAAG AGAGAGCGGCGGACGTCGCGGTCGTCGCCCGACGCAGAGTCCGGACCGAAGCCCCGAGGCGGCAAGAAGCAGCGC CGCGGCGCGCACAAGTTCCTGACGGGCGAGGACAAGGCGGCCGCCGTCCGGGCGCGCAAGCTCAAGCTCTTCTCG GCCCTGTCCAAGCGGTCGCCCTTCCCGGACTGGGGCTCGCCTCGGCCGGAGGAGTGCGCGCTGGCCCACGAGATC CTGGCCCGACTGGAGGGCGAGCCCAAGCGGGCGGCCCAGGTCGTGGCGCCGCGCACGTCGGCCGGCTGCGGCAGC TCGCCGTCGGTGCTCGACGCGCTCGTGCGCACCATCCTGTCGCAGAACACGAGCGGCAAGAACAGCGCGCTCGCC AAGCGGAGGATGGACGAGGTCTACGGCGGCAGCGACCGCTGGGAGGCCATCGTCGACGGCGGCCAGCCCAAGCTG GAGGTGGCCATCCGCAGGGGCGGCCTCAGCGTCGTCAAGTCCAACGTCATCCTCGCCCTGCTGCGCGACGTCAGG GCCGCCCACGGCGTCTACTCGCTCGACCACCTCTTCGACGCCGACGACGAGACCGCCATGCGCGAGATGCTCTCC TACCGCGGCGTCGGCCCCAAGACGGCCAGCTGCGTCCTGCTCTTCTGCCTGCAGCGCGACAGCTTCGCCGTCGAC ACCCACGTCTACCGCCTCGCCGGCATCCTGGGCTGGCGACCGCCCACGGCCACGCGCGAGGAGACGCAGGCGCAC CTCAATCTCCTCGTCCCTCCCGAGGAAAAATACCCCCTCCACGTGCTCATGATCAGACACGGCCAGAATTGCGAC GAGTGCAGGGCCGGCGGCAAGGTCCGGGGGAAATGCGAGCTGCGCAACGCCTTTCCGATCAAGCCGGCTCGAGCC ACGGCCGTCGAGGATGCCAAGGAGCAGGAAGGCATGAAAGCTGTGAAGAAGGAGGAAGACCAACCCTCGTAG |
| Transcript | >Hirsu2|3525 ATGGCCAGCTCGCCCCCCCCTCCTGCGGTCGAGCGTCCGCTACGGCGCAGCGCGCGGAATCTGAAGCTCCAGGCC GACATCAGGACGGACGAGGCTCTCGTCAAGCAGGAGGAAGAAGCCGCGAGCAGCGCGCGGAACCTGAAGCGCCCG GCCGACATCAAGACGGACGAGGAGGCTCCCATCAAGCGGGAAGACGAGGCGCCGCCGGCAGAGAAACGGATCAAG AGAGAGCGGCGGACGTCGCGGTCGTCGCCCGACGCAGAGTCCGGACCGAAGCCCCGAGGCGGCAAGAAGCAGCGC CGCGGCGCGCACAAGTTCCTGACGGGCGAGGACAAGGCGGCCGCCGTCCGGGCGCGCAAGCTCAAGCTCTTCTCG GCCCTGTCCAAGCGGTCGCCCTTCCCGGACTGGGGCTCGCCTCGGCCGGAGGAGTGCGCGCTGGCCCACGAGATC CTGGCCCGACTGGAGGGCGAGCCCAAGCGGGCGGCCCAGGTCGTGGCGCCGCGCACGTCGGCCGGCTGCGGCAGC TCGCCGTCGGTGCTCGACGCGCTCGTGCGCACCATCCTGTCGCAGAACACGAGCGGCAAGAACAGCGCGCTCGCC AAGCGGAGGATGGACGAGGTCTACGGCGGCAGCGACCGCTGGGAGGCCATCGTCGACGGCGGCCAGCCCAAGCTG GAGGTGGCCATCCGCAGGGGCGGCCTCAGCGTCGTCAAGTCCAACGTCATCCTCGCCCTGCTGCGCGACGTCAGG GCCGCCCACGGCGTCTACTCGCTCGACCACCTCTTCGACGCCGACGACGAGACCGCCATGCGCGAGATGCTCTCC TACCGCGGCGTCGGCCCCAAGACGGCCAGCTGCGTCCTGCTCTTCTGCCTGCAGCGCGACAGCTTCGCCGTCGAC ACCCACGTCTACCGCCTCGCCGGCATCCTGGGCTGGCGACCGCCCACGGCCACGCGCGAGGAGACGCAGGCGCAC CTCAATCTCCTCGTCCCTCCCGAGGAAAAATACCCCCTCCACGTGCTCATGATCAGACACGGCCAGAATTGCGAC GAGTGCAGGGCCGGCGGCAAGGTCCGGGGGAAATGCGAGCTGCGCAACGCCTTTCCGATCAAGCCGGCTCGAGCC ACGGCCGTCGAGGATGCCAAGGAGCAGGAAGGCATGAAAGCTGTGAAGAAGGAGGAAGACCAACCCTCGTAG |
| Gene | >Hirsu2|3525 ATGGCCAGCTCGCCCCCCCCTCCTGCGGTCGAGCGTCCGCTACGGCGCAGCGCGCGGAATCTGAAGCTCCAGGCC GACATCAGGACGGACGAGGCTCTCGTCAAGCAGGAGGAAGAAGCCGCGAGCAGCGCGCGGAACCTGAAGCGCCCG GCCGACATCAAGACGGACGAGGAGGCTCCCATCAAGCGGGAAGACGAGGCGCCGCCGGCAGAGAAACGGATCAAG AGAGAGCGGCGGACGTCGCGGTCGTCGCCCGACGCAGAGTCCGGACCGAAGCCCCGAGGCGGCAAGAAGCAGCGC CGCGGCGCGCACAAGTTCCTGACGGGCGAGGACAAGGCGGCCGCCGTCCGGGCGCGCAAGCTCAAGCTCTTCTCG GCCCTGTCCAAGCGGTCGCCCTTCCCGGACTGGGGCTCGCCTCGGCCGGAGGAGTGCGCGCTGGCCCACGAGATC CTGGCCCGACTGGAGGGCGAGCCCAAGCGGGCGGCCCAGGTCGTGGCGCCGCGCACGTCGGCCGGCTGCGGCAGC TCGCCGTCGGTGCTCGACGCGCTCGTGCGCACCATCCTGTCGCAGAACACGAGCGGCAAGAACAGCGCGCTCGCC AAGCGGAGGATGGACGAGGTCTACGGCGGCAGCGACCGCTGGGAGGCCATCGTCGACGGCGGCCAGCCCAAGCTG GAGGTGGCCATCCGCAGGGGCGGCCTCAGCGTCGTCAAGTCCAACGTCATCCTCGCCCTGCTGCGCGACGTCAGG GCCGCCCACGGCGTCTACTCGCTCGACCACCTCTTCGACGCCGACGACGAGACCGCCATGCGCGAGATGCTCTCC TACCGCGGCGTCGGCCCCAAGACGGCCAGCTGCGTCCTGCTCTTCTGCCTGCAGCGCGACAGCTTCGCCGTCGAC ACCCACGTCTACCGCCTCGCCGGCATCCTGGGCTGGCGACCGCCCACGGCCACGCGCGAGGAGACGCAGGCGCAC CTCAATCTCCTCGTCCCTCCCGAGGAAAAATACCCCCTCCACGTGCTCATGATCAGACACGGCCAGAATTGCGAC GAGTGCAGGGCCGGCGGCAAGGTCCGGGGGAAATGCGAGCTGCGCAACGCCTTTCCGATCAAGCCGGCTCGAGCC ACGGCCGTCGAGGATGCCAAGGAGCAGGAAGGCATGAAAGCTGTGAAGAAGGAGGAAGACCAACCCTCGTAG |