Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3523
Gene name
LocationContig_1927:3250..4179
Strand-
Gene length (bp)929
Transcript length (bp)786
Coding sequence length (bp)786
Protein length (aa) 262

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 163 236 1.0E-07
sp|P83528|STX6_CAEEL Putative syntaxin 6 OS=Caenorhabditis elegans GN=syx-6 PE=3 SV=1 165 249 6.0E-07

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Transmembrane domain 0.1891 0.1236 0.0199 0.2885 0.3235 0.0054 0.4409 0.7306 0.6376 0.1292

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 243 260 17

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2453
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|385
Ophiocordyceps australis map64 (Brazil) OphauB2|8163
Ophiocordyceps camponoti-floridani Ophcf2|05623
Ophiocordyceps camponoti-rufipedis Ophun1|1531
Ophiocordyceps kimflemingae Ophio5|8028
Ophiocordyceps subramaniannii Hirsu2|3523 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3523
MAKTSQTFLLVDHIKLSLLERRQANVLDFDSGIYDGHISRSLEQLRNGLASLRQEKLSLEQAGDISAADSISTEI
ATLEKQYDVLKAQFSDLSEPSTEFTLEYANLESPAINFTHTAPIPRKLKTVRFTDSSSPPSDALFHPYEDDPMDT
SSGLRDQAGGMNNQQLYEYHSQILDAQDVQLDRLGESISRQRELSLQIGDELDTHVAMLDEVEVVTDRHQSRLDR
AMKALKTVARGGDENKQMAIIVIIVMALILLIVILK*
Coding >Hirsu2|3523
ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT
GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT
TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGCGCTGCAGATTCTATTAGCACCGAAATT
GCGACTTTGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACG
CTCGAATATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACG
GTCCGCTTTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACG
TCAAGCGGTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGAC
GCGCAGGACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGAT
GAGCTAGACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGT
GCAATGAAAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTG
ATGGCCCTAATCCTGTTGATCGTGATTCTCAAATAA
Transcript >Hirsu2|3523
ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT
GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT
TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGCGCTGCAGATTCTATTAGCACCGAAATT
GCGACTTTGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACG
CTCGAATATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACG
GTCCGCTTTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACG
TCAAGCGGTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGAC
GCGCAGGACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGAT
GAGCTAGACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGT
GCAATGAAAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTG
ATGGCCCTAATCCTGTTGATCGTGATTCTCAAATAA
Gene >Hirsu2|3523
ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT
GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT
TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGGTAAGACCTCGCCCGGCGAGCCCCGGTC
ATGTGTCTTGTTTCTCCTCTTTCTGTACAGAGGATACCGCCTATCTATTCTTTTCCTTTTCACAACATCAACCCG
TCTGAAACCATAGGCCCGAGGCATCACTGACACTCCCCAGCGCTGCAGATTCTATTAGCACCGAAATTGCGACTT
TGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACGCTCGAAT
ATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACGGTCCGCT
TTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACGTCAAGCG
GTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGACGCGCAGG
ACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGATGAGCTAG
ACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGTGCAATGA
AAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTGATGGCCC
TAATCCTGTTGATCGTGATTCTCAAATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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