© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3523 |
| Gene name | |
| Location | Contig_1927:3250..4179 |
| Strand | - |
| Gene length (bp) | 929 |
| Transcript length (bp) | 786 |
| Coding sequence length (bp) | 786 |
| Protein length (aa) | 262 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54IX6|STX8B_DICDI | Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 | 163 | 236 | 1.0E-07 |
| sp|P83528|STX6_CAEEL | Putative syntaxin 6 OS=Caenorhabditis elegans GN=syx-6 PE=3 SV=1 | 165 | 249 | 6.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.1891 | 0.1236 | 0.0199 | 0.2885 | 0.3235 | 0.0054 | 0.4409 | 0.7306 | 0.6376 | 0.1292 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 243 | 260 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 2453 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3523 MAKTSQTFLLVDHIKLSLLERRQANVLDFDSGIYDGHISRSLEQLRNGLASLRQEKLSLEQAGDISAADSISTEI ATLEKQYDVLKAQFSDLSEPSTEFTLEYANLESPAINFTHTAPIPRKLKTVRFTDSSSPPSDALFHPYEDDPMDT SSGLRDQAGGMNNQQLYEYHSQILDAQDVQLDRLGESISRQRELSLQIGDELDTHVAMLDEVEVVTDRHQSRLDR AMKALKTVARGGDENKQMAIIVIIVMALILLIVILK* |
| Coding | >Hirsu2|3523 ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGCGCTGCAGATTCTATTAGCACCGAAATT GCGACTTTGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACG CTCGAATATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACG GTCCGCTTTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACG TCAAGCGGTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGAC GCGCAGGACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGAT GAGCTAGACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGT GCAATGAAAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTG ATGGCCCTAATCCTGTTGATCGTGATTCTCAAATAA |
| Transcript | >Hirsu2|3523 ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGCGCTGCAGATTCTATTAGCACCGAAATT GCGACTTTGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACG CTCGAATATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACG GTCCGCTTTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACG TCAAGCGGTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGAC GCGCAGGACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGAT GAGCTAGACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGT GCAATGAAAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTG ATGGCCCTAATCCTGTTGATCGTGATTCTCAAATAA |
| Gene | >Hirsu2|3523 ATGGCGAAAACCAGCCAGACTTTCCTGCTAGTGGATCATATTAAACTATCGCTACTTGAACGTCGGCAGGCCAAT GTATTGGACTTTGATAGCGGCATCTATGATGGGCACATATCGCGTTCTCTGGAACAGTTACGCAATGGACTAGCT TCTCTACGGCAGGAGAAGTTGAGCCTAGAGCAGGCAGGCGACATTAGGTAAGACCTCGCCCGGCGAGCCCCGGTC ATGTGTCTTGTTTCTCCTCTTTCTGTACAGAGGATACCGCCTATCTATTCTTTTCCTTTTCACAACATCAACCCG TCTGAAACCATAGGCCCGAGGCATCACTGACACTCCCCAGCGCTGCAGATTCTATTAGCACCGAAATTGCGACTT TGGAGAAGCAGTACGACGTCTTGAAAGCCCAGTTCAGCGACCTCTCCGAACCGTCGACCGAATTCACGCTCGAAT ATGCAAATCTCGAATCCCCCGCTATAAATTTCACACACACCGCACCAATTCCTCGCAAGCTGAAGACGGTCCGCT TTACCGACTCATCCTCACCTCCTTCCGATGCCTTGTTCCACCCCTATGAGGACGATCCAATGGACACGTCAAGCG GTTTACGTGATCAGGCCGGCGGCATGAACAACCAGCAGCTGTACGAGTATCACTCACAAATCCTTGACGCGCAGG ACGTGCAACTTGATCGCTTGGGCGAGTCAATTAGTCGTCAGAGAGAGCTGAGCCTTCAAATCGGTGATGAGCTAG ACACTCATGTTGCCATGCTGGATGAGGTTGAGGTTGTGACCGATCGACATCAAAGTCGCTTGGATCGTGCAATGA AAGCGCTCAAGACAGTGGCCAGGGGAGGCGATGAAAATAAGCAAATGGCCATTATTGTCATCATTGTGATGGCCC TAATCCTGTTGATCGTGATTCTCAAATAA |