Protein ID | Hirsu2|3521 |
Gene name | |
Location | Contig_1926:3328..4217 |
Strand | + |
Gene length (bp) | 889 |
Transcript length (bp) | 699 |
Coding sequence length (bp) | 699 |
Protein length (aa) | 233 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13967 | RSN1_TM | Late exocytosis, associated with Golgi transport | 5.7E-46 | 31 | 182 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q03516|RSN1_YEAST | Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 | 31 | 226 | 7.0E-38 |
sp|Q12252|PHM7_YEAST | Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1 | 27 | 224 | 2.0E-29 |
sp|Q09766|YA7D_SCHPO | Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 | 35 | 226 | 6.0E-26 |
sp|F4HYR3|CSCL6_ARATH | CSC1-like protein At1g62320 OS=Arabidopsis thaliana GN=At1g62320 PE=3 SV=2 | 82 | 216 | 9.0E-11 |
sp|B5TYT3|CSCL7_ARATH | CSC1-like protein At1g11960 OS=Arabidopsis thaliana GN=At1g11960 PE=2 SV=1 | 30 | 216 | 3.0E-10 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q03516|RSN1_YEAST | Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1 | 31 | 226 | 7.0E-38 |
sp|Q12252|PHM7_YEAST | Phosphate metabolism protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHM7 PE=1 SV=1 | 27 | 224 | 2.0E-29 |
sp|Q09766|YA7D_SCHPO | Uncharacterized membrane protein C24H6.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.13 PE=1 SV=1 | 35 | 226 | 6.0E-26 |
sp|F4HYR3|CSCL6_ARATH | CSC1-like protein At1g62320 OS=Arabidopsis thaliana GN=At1g62320 PE=3 SV=2 | 82 | 216 | 9.0E-11 |
sp|B5TYT3|CSCL7_ARATH | CSC1-like protein At1g11960 OS=Arabidopsis thaliana GN=At1g11960 PE=2 SV=1 | 30 | 216 | 3.0E-10 |
sp|Q9LVE4|CSCL4_ARATH | CSC1-like protein At3g21620 OS=Arabidopsis thaliana GN=At3g21620 PE=2 SV=1 | 58 | 216 | 3.0E-09 |
sp|Q8VZM5|CSCL3_ARATH | CSC1-like protein At4g15430 OS=Arabidopsis thaliana GN=At4g15430 PE=2 SV=1 | 39 | 216 | 2.0E-08 |
sp|Q9XEA1|CSCL5_ARATH | Protein OSCA1 OS=Arabidopsis thaliana GN=OSCA1 PE=1 SV=1 | 82 | 216 | 5.0E-08 |
sp|Q5XEZ5|CSC1_ARATH | Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana GN=CSC1 PE=2 SV=1 | 82 | 216 | 4.0E-07 |
sp|Q06538|CSC1_YEAST | Calcium permeable stress-gated cation channel 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSC1 PE=1 SV=1 | 46 | 227 | 7.0E-07 |
sp|O43022|YGV8_SCHPO | Uncharacterized protein C354.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC354.08c PE=3 SV=1 | 71 | 215 | 1.0E-06 |
sp|Q9SY14|CSCL2_ARATH | CSC1-like protein At4g02900 OS=Arabidopsis thaliana GN=At4g02900 PE=3 SV=1 | 82 | 216 | 2.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Transmembrane domain | 0.1119 | 0.1548 | 0.0155 | 0.4505 | 0.1728 | 0.0035 | 0.373 | 0.624 | 0.4994 | 0.0186 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 30 | 52 | 22 |
2 | 109 | 131 | 22 |
3 | 161 | 180 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 112 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3521 MGAFVSWIKDNLDTNNGAPPPDTKPQSISGMISTLVPVLVISALYLLFFLVFRRSQRRYYAPRTYLGSLPHNRRS PDLPAGWFNWLGTFWKIPDAYALTHQSLDAYLFLRYLRVAMIICFVSLCITWPILFPVNATGKNGQAQLEMLSYS NINQERESGRFYAHVFVGWAVYGFVMYMIMRECIFYINLRQAYLLAPHYSRRISSRTVLFTAVPSDYLDEARIRQ MSATRWP* |
Coding | >Hirsu2|3521 ATGGGGGCCTTCGTCAGCTGGATCAAGGACAACCTCGACACCAACAATGGCGCGCCGCCGCCCGACACGAAGCCC CAGTCGATATCGGGCATGATCTCGACGCTGGTGCCCGTGCTCGTCATCTCGGCCCTCTACCTGCTCTTCTTCCTC GTCTTCAGGAGGTCCCAGCGCCGGTACTATGCCCCGAGGACCTACCTCGGCTCCCTGCCGCACAACCGCCGGAGC CCCGACCTGCCCGCTGGCTGGTTCAACTGGCTCGGCACCTTCTGGAAGATACCGGACGCCTACGCCCTCACCCAC CAGAGCCTCGACGCCTACCTCTTCCTGCGCTACCTGCGCGTCGCCATGATCATCTGCTTCGTCAGCCTCTGCATC ACCTGGCCCATCCTCTTCCCCGTCAACGCGACCGGCAAGAACGGCCAGGCCCAGCTCGAGATGCTGTCGTACAGC AACATCAACCAGGAGCGCGAGTCCGGCCGCTTCTACGCCCACGTCTTCGTCGGCTGGGCCGTCTACGGCTTCGTC ATGTACATGATCATGCGCGAGTGCATCTTCTACATCAACCTGCGCCAGGCCTACCTGCTCGCCCCCCACTACTCG CGCCGCATCTCCTCCCGCACCGTCCTCTTCACCGCCGTCCCCTCCGACTACCTCGACGAGGCCCGCATCCGCCAA ATGAGCGCGACGAGGTGGCCATGA |
Transcript | >Hirsu2|3521 ATGGGGGCCTTCGTCAGCTGGATCAAGGACAACCTCGACACCAACAATGGCGCGCCGCCGCCCGACACGAAGCCC CAGTCGATATCGGGCATGATCTCGACGCTGGTGCCCGTGCTCGTCATCTCGGCCCTCTACCTGCTCTTCTTCCTC GTCTTCAGGAGGTCCCAGCGCCGGTACTATGCCCCGAGGACCTACCTCGGCTCCCTGCCGCACAACCGCCGGAGC CCCGACCTGCCCGCTGGCTGGTTCAACTGGCTCGGCACCTTCTGGAAGATACCGGACGCCTACGCCCTCACCCAC CAGAGCCTCGACGCCTACCTCTTCCTGCGCTACCTGCGCGTCGCCATGATCATCTGCTTCGTCAGCCTCTGCATC ACCTGGCCCATCCTCTTCCCCGTCAACGCGACCGGCAAGAACGGCCAGGCCCAGCTCGAGATGCTGTCGTACAGC AACATCAACCAGGAGCGCGAGTCCGGCCGCTTCTACGCCCACGTCTTCGTCGGCTGGGCCGTCTACGGCTTCGTC ATGTACATGATCATGCGCGAGTGCATCTTCTACATCAACCTGCGCCAGGCCTACCTGCTCGCCCCCCACTACTCG CGCCGCATCTCCTCCCGCACCGTCCTCTTCACCGCCGTCCCCTCCGACTACCTCGACGAGGCCCGCATCCGCCAA ATGAGCGCGACGAGGTGGCCATGA |
Gene | >Hirsu2|3521 ATGGGGGCCTTCGTCAGCTGGATCAAGGACAACCTCGACACCAACAATGGCGCGCCGCCGCCCGACACGAAGCCC CAGTCGATATCGGGTGCGTCTTGTCCCGACGCCCAACATCTCGGCTGACTGTGCGACTGACCGACCGCAGGCATG ATCTCGACGCTGGTGCCCGTGCTCGTCATCTCGGCCCTCTACCTGCTCTTCTTCCTCGTCTTCAGGAGGTCCCAG CGCCGGTACTATGCCCCGAGGACCTACCTCGGCTCCCTGCCGCACAAGTAAGCGTCGAGGCCGCCCCGTCCCCCC CCCCCCCCTCCGGACGCCCGCTGACCGGCTCTCGCCAGCCGCCGGAGCCCCGACCTGCCCGCTGGCTGGTTCAAC TGGCTCGGCACCTTCTGGAAGATACCGGACGCCTACGCCCTCACCCACCAGAGCCTCGACGCCTACCTCTTCCTG CGCTACCTGCGCGTCGCCATGATCATCTGCTTCGTCAGCCTCTGCATCACCTGGCCCATCCTCTTCCCCGTCAAC GCGACCGGCAAGAACGGCCAGGCCCAGCTCGAGATGCTGTCGTACAGCAACATCAACCAGGAGCGCGAGTCCGGC CGCTTCTACGCCCACGTCTTCGTCGGCTGGGCCGTCTACGGCTTCGTCATGTACATGATCATGCGCGAGTGCATC TTCTACATCAACCTGCGCCAGGCCTACCTGCTCGCCCCCCACTACTCGCGCCGCATCTCCTCCCGCACCGTCCTC TTCACCGCCGTCCCCTCCGACTACCTCGACGAGGCCCGCATCCGCCAAATGTTCAACGACTCGGTCCGCCGCGTC TGGATCGCCGGCAAGGCCGACAAGCTCGACGAGATGGTCGAGGAGCGCGACGAGGTGGCCATGA |