© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3518 |
| Gene name | |
| Location | Contig_1924:2948..3557 |
| Strand | + |
| Gene length (bp) | 609 |
| Transcript length (bp) | 504 |
| Coding sequence length (bp) | 504 |
| Protein length (aa) | 168 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.247 | 0.3623 | 0.9181 | 0.1233 | 0.2579 | 0.142 | 0.1352 | 0.0538 | 0.0619 | 0.166 |
| Orthofinder run ID | 4 |
| Orthogroup | 9371 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3518 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3518 LYGDAGGNYRRWLEDEFRDDVHYGGITTTSDLHKRWFGRDIIDWLTRMLSPSISREFGYKIKDDFTLKILDDRFY RDLAQPLDITGSYLIFYNKGRISATMRLEALASVRYESKKTIMTVLFPGAAFNVPGIATIGPALRLDGKVDVGLT VSAEFETNIDIASWEIR* |
| Coding | >Hirsu2|3518 CTGTATGGCGACGCCGGCGGCAACTACCGGCGCTGGCTCGAGGACGAGTTCCGCGACGACGTGCATTACGGCGGC ATAACGACGACGTCAGACCTGCACAAGCGCTGGTTCGGCCGGGACATTATCGACTGGCTTACGCGGATGCTATCG CCGTCGATTAGTAGGGAGTTTGGCTATAAGATTAAAGACGACTTTACCCTTAAGATTCTCGACGACCGCTTCTAC CGAGACCTAGCCCAGCCGCTCGATATCACCGGCTCGTACCTGATATTTTATAATAAGGGCCGCATCTCGGCCACG ATGAGGCTCGAGGCCCTGGCATCGGTGCGGTACGAGAGCAAGAAGACGATTATGACGGTGCTATTTCCGGGCGCG GCCTTTAACGTGCCCGGCATCGCCACCATCGGCCCGGCCCTGCGTCTCGACGGCAAGGTCGACGTCGGCCTGACC GTATCGGCCGAGTTCGAGACCAATATTGATATAGCGTCGTGGGAGATCCGCTAG |
| Transcript | >Hirsu2|3518 CTGTATGGCGACGCCGGCGGCAACTACCGGCGCTGGCTCGAGGACGAGTTCCGCGACGACGTGCATTACGGCGGC ATAACGACGACGTCAGACCTGCACAAGCGCTGGTTCGGCCGGGACATTATCGACTGGCTTACGCGGATGCTATCG CCGTCGATTAGTAGGGAGTTTGGCTATAAGATTAAAGACGACTTTACCCTTAAGATTCTCGACGACCGCTTCTAC CGAGACCTAGCCCAGCCGCTCGATATCACCGGCTCGTACCTGATATTTTATAATAAGGGCCGCATCTCGGCCACG ATGAGGCTCGAGGCCCTGGCATCGGTGCGGTACGAGAGCAAGAAGACGATTATGACGGTGCTATTTCCGGGCGCG GCCTTTAACGTGCCCGGCATCGCCACCATCGGCCCGGCCCTGCGTCTCGACGGCAAGGTCGACGTCGGCCTGACC GTATCGGCCGAGTTCGAGACCAATATTGATATAGCGTCGTGGGAGATCCGCTAG |
| Gene | >Hirsu2|3518 CTGTATGGCGACGCCGGCGGCAACTACCGGCGCTGGCTCGAGGACGAGTTCCGCGACGACGTGCATTACGGCGGC ATAACGACGACGTCAGACCTGCACAAGCGCTGGTTCGGCCGGGACATTATCGACTGGCTTACGCGGATGCTATCG CCGTCGATTAGTAGGGAGTTTGGCTATAAGATTAAAGACGACTTTACCCTTAAGATTCTCGACGACCGCTTCTAG TGCGGCAAGGGCGCCCTCTTATACGAGGGCCACATCCTGGCGCAGGCGACAGCGTCGGTTAATATTGCAACCAGC TTTGGCATAACGCTGATAGCTCGCTTTAGCCGAGACCTAGCCCAGCCGCTCGATATCACCGGCTCGTACCTGATA TTTTATAATAAGGGCCGCATCTCGGCCACGATGAGGCTCGAGGCCCTGGCATCGGTGCGGTACGAGAGCAAGAAG ACGATTATGACGGTGCTATTTCCGGGCGCGGCCTTTAACGTGCCCGGCATCGCCACCATCGGCCCGGCCCTGCGT CTCGACGGCAAGGTCGACGTCGGCCTGACCGTATCGGCCGAGTTCGAGACCAATATTGATATAGCGTCGTGGGAG ATCCGCTAG |