© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3513 |
| Gene name | |
| Location | Contig_1921:2428..3376 |
| Strand | + |
| Gene length (bp) | 948 |
| Transcript length (bp) | 879 |
| Coding sequence length (bp) | 879 |
| Protein length (aa) | 293 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00651 | BTB | BTB/POZ domain | 3.4E-04 | 20 | 61 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6728 | 0.5241 | 0.1265 | 0.0409 | 0.1156 | 0.0107 | 0.0807 | 0.1388 | 0.139 | 0.0022 |
| Orthofinder run ID | 4 |
| Orthogroup | 6105 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3513 MYSDGDELPSLPNRKEMEQLAAKPVSDLTIVCGTSKWFAHKAVVCPQSAFFAVACNGPFKVSSHRTDVPLDEQQT RPSTYWIFKPVADVDQTLSPQQEGRSGVVDLADDEPQAVRLMMCYFYQADYPRVRAAREPSRLRSLWHFVHGSLV DDTGGDDDSNLAVHAQVYALAEKYAVDGLKRLARYKFQLEAAGHWRSRDFARAAEMVFTSTVDADRGLRDIVVDA FDDHRSLLHLGPSKAALRRVPGLAYDVLMGLHDPTAGWDASRMARARKADGREDDDDDDDEEDHGPA* |
| Coding | >Hirsu2|3513 ATGTACAGCGACGGCGACGAGCTGCCGTCCCTGCCGAACAGAAAGGAGATGGAGCAGCTCGCCGCCAAGCCCGTC TCGGACCTGACCATCGTCTGCGGCACGAGCAAGTGGTTCGCCCACAAGGCCGTCGTCTGCCCGCAGTCGGCCTTC TTCGCCGTCGCGTGCAACGGCCCGTTCAAGGTCAGCAGCCATCGGACAGACGTGCCGCTGGATGAGCAGCAGACA CGTCCATCAACGTACTGGATTTTCAAACCCGTGGCTGACGTGGACCAAACGCTTTCACCGCAACAGGAGGGCCGG TCAGGCGTCGTCGACCTGGCCGACGACGAGCCGCAGGCGGTCCGGCTGATGATGTGTTATTTCTATCAGGCGGAC TACCCGCGCGTGCGGGCCGCGCGCGAGCCGTCGAGGCTGCGGTCGCTGTGGCACTTCGTCCACGGCTCGCTCGTC GACGACACGGGCGGCGATGACGACTCCAACCTGGCCGTCCACGCCCAGGTGTACGCGCTGGCGGAGAAGTACGCC GTCGACGGCCTGAAGCGGCTGGCGCGCTACAAGTTCCAGCTCGAGGCGGCCGGCCACTGGCGCTCGCGCGACTTC GCCCGCGCCGCCGAGATGGTCTTCACGTCCACCGTCGACGCCGACCGCGGCCTGCGCGACATCGTCGTCGACGCC TTCGACGACCACCGCAGCCTGCTGCACCTGGGCCCCTCCAAGGCCGCCCTGCGCCGCGTCCCGGGCCTGGCCTAC GACGTCCTCATGGGCCTGCACGACCCGACGGCCGGATGGGACGCCAGCCGCATGGCGCGCGCGAGGAAGGCGGAT GGGCGTGAGGACGACGACGACGACGACGACGAGGAGGACCATGGTCCGGCCTGA |
| Transcript | >Hirsu2|3513 ATGTACAGCGACGGCGACGAGCTGCCGTCCCTGCCGAACAGAAAGGAGATGGAGCAGCTCGCCGCCAAGCCCGTC TCGGACCTGACCATCGTCTGCGGCACGAGCAAGTGGTTCGCCCACAAGGCCGTCGTCTGCCCGCAGTCGGCCTTC TTCGCCGTCGCGTGCAACGGCCCGTTCAAGGTCAGCAGCCATCGGACAGACGTGCCGCTGGATGAGCAGCAGACA CGTCCATCAACGTACTGGATTTTCAAACCCGTGGCTGACGTGGACCAAACGCTTTCACCGCAACAGGAGGGCCGG TCAGGCGTCGTCGACCTGGCCGACGACGAGCCGCAGGCGGTCCGGCTGATGATGTGTTATTTCTATCAGGCGGAC TACCCGCGCGTGCGGGCCGCGCGCGAGCCGTCGAGGCTGCGGTCGCTGTGGCACTTCGTCCACGGCTCGCTCGTC GACGACACGGGCGGCGATGACGACTCCAACCTGGCCGTCCACGCCCAGGTGTACGCGCTGGCGGAGAAGTACGCC GTCGACGGCCTGAAGCGGCTGGCGCGCTACAAGTTCCAGCTCGAGGCGGCCGGCCACTGGCGCTCGCGCGACTTC GCCCGCGCCGCCGAGATGGTCTTCACGTCCACCGTCGACGCCGACCGCGGCCTGCGCGACATCGTCGTCGACGCC TTCGACGACCACCGCAGCCTGCTGCACCTGGGCCCCTCCAAGGCCGCCCTGCGCCGCGTCCCGGGCCTGGCCTAC GACGTCCTCATGGGCCTGCACGACCCGACGGCCGGATGGGACGCCAGCCGCATGGCGCGCGCGAGGAAGGCGGAT GGGCGTGAGGACGACGACGACGACGACGACGAGGAGGACCATGGTCCGGCCTGA |
| Gene | >Hirsu2|3513 ATGTACAGCGACGGCGACGAGCTGCCGTCCCTGCCGAACAGAAAGGAGATGGAGTAAGCTCGCAGGCGGACAGAG TCAAGCCAAAGCATGCCGATGGCCGGCCGCTGATCCTCCGAGTCCAGGCAGCTCGCCGCCAAGCCCGTCTCGGAC CTGACCATCGTCTGCGGCACGAGCAAGTGGTTCGCCCACAAGGCCGTCGTCTGCCCGCAGTCGGCCTTCTTCGCC GTCGCGTGCAACGGCCCGTTCAAGGTCAGCAGCCATCGGACAGACGTGCCGCTGGATGAGCAGCAGACACGTCCA TCAACGTACTGGATTTTCAAACCCGTGGCTGACGTGGACCAAACGCTTTCACCGCAACAGGAGGGCCGGTCAGGC GTCGTCGACCTGGCCGACGACGAGCCGCAGGCGGTCCGGCTGATGATGTGTTATTTCTATCAGGCGGACTACCCG CGCGTGCGGGCCGCGCGCGAGCCGTCGAGGCTGCGGTCGCTGTGGCACTTCGTCCACGGCTCGCTCGTCGACGAC ACGGGCGGCGATGACGACTCCAACCTGGCCGTCCACGCCCAGGTGTACGCGCTGGCGGAGAAGTACGCCGTCGAC GGCCTGAAGCGGCTGGCGCGCTACAAGTTCCAGCTCGAGGCGGCCGGCCACTGGCGCTCGCGCGACTTCGCCCGC GCCGCCGAGATGGTCTTCACGTCCACCGTCGACGCCGACCGCGGCCTGCGCGACATCGTCGTCGACGCCTTCGAC GACCACCGCAGCCTGCTGCACCTGGGCCCCTCCAAGGCCGCCCTGCGCCGCGTCCCGGGCCTGGCCTACGACGTC CTCATGGGCCTGCACGACCCGACGGCCGGATGGGACGCCAGCCGCATGGCGCGCGCGAGGAAGGCGGATGGGCGT GAGGACGACGACGACGACGACGACGAGGAGGACCATGGTCCGGCCTGA |