Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3510
Gene name
LocationContig_1920:293..1496
Strand+
Gene length (bp)1203
Transcript length (bp)966
Coding sequence length (bp)966
Protein length (aa) 322

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 1.2E-15 259 311

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 2 315 2.0E-54
sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 1 316 2.0E-40
sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 21 292 5.0E-29
sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 21 292 2.0E-27
sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 45 315 2.0E-25
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 2 315 2.0E-54
sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 1 316 2.0E-40
sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 21 292 5.0E-29
sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 21 292 2.0E-27
sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 45 315 2.0E-25
sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 45 315 2.0E-23
sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1 45 315 5.0E-23
sp|P61268|STX1B_SHEEP Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 70 310 3.0E-14
sp|P61267|STX1B_BOVIN Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1 70 310 3.0E-14
sp|P61265|STX1B_RAT Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1 70 310 3.0E-14
sp|P61264|STX1B_MOUSE Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1 70 310 3.0E-14
sp|P61266|STX1B_HUMAN Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1 70 310 3.0E-14
sp|O16000|STX1A_CAEEL Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 194 315 1.0E-12
sp|O35526|STX1A_MOUSE Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3 101 310 5.0E-12
sp|Q24547|STX1A_DROME Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 194 314 7.0E-12
sp|P32851|STX1A_RAT Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 101 310 1.0E-11
sp|Q5R4L2|STX1A_PONAB Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1 101 310 1.0E-11
sp|Q16623|STX1A_HUMAN Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1 101 310 2.0E-11
sp|Q16932|STX_APLCA Syntaxin OS=Aplysia californica PE=2 SV=1 54 303 3.0E-11
sp|P32850|STX1A_BOVIN Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1 101 310 3.0E-11
sp|O94651|PEP12_SCHPO Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 219 314 5.0E-11
sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 226 314 2.0E-09
sp|P32854|PEP12_YEAST Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP12 PE=1 SV=2 219 315 8.0E-09
sp|A8WVD0|STX1A_CAEBR Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1 194 296 1.0E-08
sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=2 SV=3 22 314 1.0E-08
sp|Q5RBW6|STX12_PONAB Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 226 303 9.0E-08
sp|Q86Y82|STX12_HUMAN Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 226 303 3.0E-07
sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 197 318 4.0E-07
sp|Q20024|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syx-3 PE=3 SV=3 206 315 1.0E-06
sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 160 319 3.0E-06
sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 226 308 3.0E-06
sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 206 292 4.0E-06
sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 226 292 7.0E-06
sp|G3V7P1|STX12_RAT Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1 226 298 7.0E-06
sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 226 292 7.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 297 314 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3510
MWRDRTNLYISYRQSGSRGDEDRRGLLTGSSLAHDGDIVLEMDLLPPRWAEISDDITDLLAEISSRGQRLERLHQ
QHVLPGFNDSEAKQAEEVQIEKLTQEITKGFHDCHRLIQRIEQTLHDSKQLVSLSRAEETIARNLQISLASRVQE
ASASFRKKQSAYLKKLRDMGSLASFSAEPPSTPQTEYLHISLQESLYESDADRVFSQSTLQAASQQKMLHFDNSA
IAQREREIGDIALGIIELSDLFSDLQTMVIDQGTMLDRIDYNVERMNEDVKRANKELKVAFGYQRKTARRKIIFL
LLLIIAGLFILLFIKPKKHGS*
Coding >Hirsu2|3510
ATGTGGCGCGACCGTACCAACCTATATATTTCTTACCGCCAGTCCGGCAGTCGTGGAGACGAAGATCGGCGTGGG
CTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCCCCCGATGGGCT
GAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGCGGTTGCACCAG
CAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGAAGCTTACCCAG
GAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACGACTCAAAACAA
TTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCCGGGTCCAGGAG
GCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAAGCTCCGCGACATGGGTAGCTTGGCATCGTTT
TCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTATACGAGTCCGAC
GCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTCGATAACTCTGCC
ATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTATTTTCAGATCTG
CAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATGAATGAGGATGTC
AAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAGATCATCTTCTTG
CTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCCTGA
Transcript >Hirsu2|3510
ATGTGGCGCGACCGTACCAACCTATATATTTCTTACCGCCAGTCCGGCAGTCGTGGAGACGAAGATCGGCGTGGG
CTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCCCCCGATGGGCT
GAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGCGGTTGCACCAG
CAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGAAGCTTACCCAG
GAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACGACTCAAAACAA
TTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCCGGGTCCAGGAG
GCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAAGCTCCGCGACATGGGTAGCTTGGCATCGTTT
TCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTATACGAGTCCGAC
GCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTCGATAACTCTGCC
ATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTATTTTCAGATCTG
CAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATGAATGAGGATGTC
AAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAGATCATCTTCTTG
CTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCCTGA
Gene >Hirsu2|3510
ATGTGGCGCGACCGTACCAACCTGTTCGTCTTGTTCGCCTTTCCGCGCGAAGTCATGGCCAAATTAGCTGACCGC
CAAGCGTCGATTCTCCTGGCTATAGATATATTTCTTACCGCCAGTCGTACGCCCATCACCCCTTTCAGCGTAGCA
GATCCCAAGCAGGTGGTGTCTCCGTTCCTGCTGTCTTCGCTCATGCCTTCTCCAGCGGCAGTCGTGGAGACGAAG
ATCGGCGTGGGCTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCC
CCCGATGGGCTGAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGC
GGTTGCACCAGCAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGA
AGCTTACCCAGGAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACG
ACTCAAAACAATTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCC
GGGTCCAGGAGGCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAGTATTTGGCATCACCCTCCGT
CCACCCTTGCTTGATGTTTTCTGTTTACAATTTGACTCATCCTTCTGTCGAGCAGAGCTCCGCGACATGGGTAGC
TTGGCATCGTTTTCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTA
TACGAGTCCGACGCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTC
GATAACTCTGCCATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTA
TTTTCAGATCTGCAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATG
AATGAGGATGTCAAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAG
ATCATCTTCTTGCTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCC
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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