Protein ID | Hirsu2|3510 |
Gene name | |
Location | Contig_1920:293..1496 |
Strand | + |
Gene length (bp) | 1203 |
Transcript length (bp) | 966 |
Coding sequence length (bp) | 966 |
Protein length (aa) | 322 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05739 | SNARE | SNARE domain | 1.2E-15 | 259 | 311 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9P6P1|TLG2_SCHPO | t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 | 2 | 315 | 2.0E-54 |
sp|Q08144|TLG2_YEAST | T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 | 1 | 316 | 2.0E-40 |
sp|Q8BVI5|STX16_MOUSE | Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 | 21 | 292 | 5.0E-29 |
sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 21 | 292 | 2.0E-27 |
sp|Q9SUJ1|SYP43_ARATH | Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 | 45 | 315 | 2.0E-25 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9P6P1|TLG2_SCHPO | t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 | 2 | 315 | 2.0E-54 |
sp|Q08144|TLG2_YEAST | T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 | 1 | 316 | 2.0E-40 |
sp|Q8BVI5|STX16_MOUSE | Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 | 21 | 292 | 5.0E-29 |
sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 21 | 292 | 2.0E-27 |
sp|Q9SUJ1|SYP43_ARATH | Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 | 45 | 315 | 2.0E-25 |
sp|O65359|SYP41_ARATH | Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 | 45 | 315 | 2.0E-23 |
sp|Q9SWH4|SYP42_ARATH | Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1 | 45 | 315 | 5.0E-23 |
sp|P61268|STX1B_SHEEP | Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 | 70 | 310 | 3.0E-14 |
sp|P61267|STX1B_BOVIN | Syntaxin-1B OS=Bos taurus GN=STX1B PE=1 SV=1 | 70 | 310 | 3.0E-14 |
sp|P61265|STX1B_RAT | Syntaxin-1B OS=Rattus norvegicus GN=Stx1b PE=1 SV=1 | 70 | 310 | 3.0E-14 |
sp|P61264|STX1B_MOUSE | Syntaxin-1B OS=Mus musculus GN=Stx1b PE=1 SV=1 | 70 | 310 | 3.0E-14 |
sp|P61266|STX1B_HUMAN | Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1 | 70 | 310 | 3.0E-14 |
sp|O16000|STX1A_CAEEL | Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1 | 194 | 315 | 1.0E-12 |
sp|O35526|STX1A_MOUSE | Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3 | 101 | 310 | 5.0E-12 |
sp|Q24547|STX1A_DROME | Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1 | 194 | 314 | 7.0E-12 |
sp|P32851|STX1A_RAT | Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1 | 101 | 310 | 1.0E-11 |
sp|Q5R4L2|STX1A_PONAB | Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1 | 101 | 310 | 1.0E-11 |
sp|Q16623|STX1A_HUMAN | Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1 | 101 | 310 | 2.0E-11 |
sp|Q16932|STX_APLCA | Syntaxin OS=Aplysia californica PE=2 SV=1 | 54 | 303 | 3.0E-11 |
sp|P32850|STX1A_BOVIN | Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1 | 101 | 310 | 3.0E-11 |
sp|O94651|PEP12_SCHPO | Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 | 219 | 314 | 5.0E-11 |
sp|O70439|STX7_MOUSE | Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 | 226 | 314 | 2.0E-09 |
sp|P32854|PEP12_YEAST | Syntaxin PEP12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP12 PE=1 SV=2 | 219 | 315 | 8.0E-09 |
sp|A8WVD0|STX1A_CAEBR | Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1 | 194 | 296 | 1.0E-08 |
sp|P32856|STX2_HUMAN | Syntaxin-2 OS=Homo sapiens GN=STX2 PE=2 SV=3 | 22 | 314 | 1.0E-08 |
sp|Q5RBW6|STX12_PONAB | Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1 | 226 | 303 | 9.0E-08 |
sp|Q86Y82|STX12_HUMAN | Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1 | 226 | 303 | 3.0E-07 |
sp|Q54JY7|STX7A_DICDI | Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 | 197 | 318 | 4.0E-07 |
sp|Q20024|STX3_CAEEL | Putative syntaxin-3 OS=Caenorhabditis elegans GN=syx-3 PE=3 SV=3 | 206 | 315 | 1.0E-06 |
sp|O64791|SY124_ARATH | Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 | 160 | 319 | 3.0E-06 |
sp|O15400|STX7_HUMAN | Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 | 226 | 308 | 3.0E-06 |
sp|Q3ZBT5|STX7_BOVIN | Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 | 206 | 292 | 4.0E-06 |
sp|O70257|STX7_RAT | Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 | 226 | 292 | 7.0E-06 |
sp|G3V7P1|STX12_RAT | Syntaxin-12 OS=Rattus norvegicus GN=Stx12 PE=1 SV=1 | 226 | 298 | 7.0E-06 |
sp|Q5R602|STX7_PONAB | Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 | 226 | 292 | 7.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0986 | 0.2282 | 0.021 | 0.1819 | 0.0944 | 0.0048 | 0.2632 | 0.6591 | 0.3109 | 0.1506 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 297 | 314 | 17 |
Orthofinder run ID | 4 |
Orthogroup | 5139 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3510 MWRDRTNLYISYRQSGSRGDEDRRGLLTGSSLAHDGDIVLEMDLLPPRWAEISDDITDLLAEISSRGQRLERLHQ QHVLPGFNDSEAKQAEEVQIEKLTQEITKGFHDCHRLIQRIEQTLHDSKQLVSLSRAEETIARNLQISLASRVQE ASASFRKKQSAYLKKLRDMGSLASFSAEPPSTPQTEYLHISLQESLYESDADRVFSQSTLQAASQQKMLHFDNSA IAQREREIGDIALGIIELSDLFSDLQTMVIDQGTMLDRIDYNVERMNEDVKRANKELKVAFGYQRKTARRKIIFL LLLIIAGLFILLFIKPKKHGS* |
Coding | >Hirsu2|3510 ATGTGGCGCGACCGTACCAACCTATATATTTCTTACCGCCAGTCCGGCAGTCGTGGAGACGAAGATCGGCGTGGG CTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCCCCCGATGGGCT GAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGCGGTTGCACCAG CAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGAAGCTTACCCAG GAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACGACTCAAAACAA TTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCCGGGTCCAGGAG GCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAAGCTCCGCGACATGGGTAGCTTGGCATCGTTT TCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTATACGAGTCCGAC GCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTCGATAACTCTGCC ATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTATTTTCAGATCTG CAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATGAATGAGGATGTC AAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAGATCATCTTCTTG CTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCCTGA |
Transcript | >Hirsu2|3510 ATGTGGCGCGACCGTACCAACCTATATATTTCTTACCGCCAGTCCGGCAGTCGTGGAGACGAAGATCGGCGTGGG CTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCCCCCGATGGGCT GAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGCGGTTGCACCAG CAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGAAGCTTACCCAG GAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACGACTCAAAACAA TTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCCGGGTCCAGGAG GCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAAGCTCCGCGACATGGGTAGCTTGGCATCGTTT TCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTATACGAGTCCGAC GCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTCGATAACTCTGCC ATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTATTTTCAGATCTG CAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATGAATGAGGATGTC AAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAGATCATCTTCTTG CTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCCTGA |
Gene | >Hirsu2|3510 ATGTGGCGCGACCGTACCAACCTGTTCGTCTTGTTCGCCTTTCCGCGCGAAGTCATGGCCAAATTAGCTGACCGC CAAGCGTCGATTCTCCTGGCTATAGATATATTTCTTACCGCCAGTCGTACGCCCATCACCCCTTTCAGCGTAGCA GATCCCAAGCAGGTGGTGTCTCCGTTCCTGCTGTCTTCGCTCATGCCTTCTCCAGCGGCAGTCGTGGAGACGAAG ATCGGCGTGGGCTTCTCACGGGTAGCTCGCTCGCACATGACGGTGACATTGTCCTAGAGATGGATCTACTTCCCC CCCGATGGGCTGAAATTTCCGACGATATTACGGATCTGCTTGCCGAAATTTCGTCCAGGGGCCAGCGACTAGAGC GGTTGCACCAGCAACATGTTCTGCCTGGCTTCAATGACAGCGAGGCCAAGCAAGCCGAGGAGGTTCAAATTGAGA AGCTTACCCAGGAGATCACCAAAGGATTCCATGATTGCCATCGACTGATCCAGCGCATTGAGCAGACCTTGCACG ACTCAAAACAATTAGTATCCCTCAGCCGTGCTGAGGAGACTATAGCAAGAAATTTACAAATTTCCCTTGCCAGCC GGGTCCAGGAGGCTAGCGCCAGCTTTCGGAAGAAGCAAAGCGCATATCTCAAGAGTATTTGGCATCACCCTCCGT CCACCCTTGCTTGATGTTTTCTGTTTACAATTTGACTCATCCTTCTGTCGAGCAGAGCTCCGCGACATGGGTAGC TTGGCATCGTTTTCAGCGGAGCCGCCTTCCACCCCGCAGACTGAATATCTGCACATTTCCTTACAGGAGTCCTTA TACGAGTCCGACGCCGACCGAGTCTTCTCGCAGTCGACACTCCAGGCGGCCTCGCAACAAAAAATGCTCCATTTC GATAACTCTGCCATAGCGCAACGAGAGCGTGAGATAGGGGACATTGCGCTGGGCATCATCGAACTGTCAGATTTA TTTTCAGATCTGCAGACCATGGTCATCGATCAGGGAACTATGCTTGACCGGATAGACTACAACGTGGAACGTATG AATGAGGATGTCAAAAGAGCTAACAAAGAGCTGAAAGTCGCATTCGGGTACCAGAGGAAAACTGCTCGGAGGAAG ATCATCTTCTTGCTCCTTCTTATCATCGCCGGACTATTCATTCTTCTATTTATCAAACCGAAAAAGCACGGCTCC TGA |