© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|35 |
| Gene name | |
| Location | Contig_100:31203..32029 |
| Strand | + |
| Gene length (bp) | 826 |
| Transcript length (bp) | 771 |
| Coding sequence length (bp) | 771 |
| Protein length (aa) | 257 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14555 | UBA_4 | UBA-like domain | 1.4E-05 | 192 | 226 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear export signal | 0.4976 | 0.6353 | 0.0223 | 0.1147 | 0.2086 | 0.0039 | 0.1853 | 0.2444 | 0.1005 | 0.0419 |
| Orthofinder run ID | 4 |
| Orthogroup | 2447 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|35 MDFCCTCATALTAEPRRLRGERTTECCARTICASCIQSNARFATYCLYCQVSSAPSPLPQRLRDPPAYTSIPSTR ASTADASTAPPPYTTTTCAAESPQKTGLGADSEKGVPDDTLHFLNHEHDSIASLSLRYGVPAPVLRRANNITSDH LLLGRRTILIPGQYYSSGISLSPRPVHGEEDELRKGKIRRFMTSCKVFDYDVALLYLEQSSYDLEAAVLSYFDDD AWERRHPRQRLGTATTPGRGPDRRNRLWRGL* |
| Coding | >Hirsu2|35 ATGGACTTTTGCTGCACCTGCGCCACGGCCCTGACGGCCGAGCCTCGCCGGCTTCGGGGTGAGCGCACGACAGAG TGCTGTGCCAGAACCATCTGCGCCTCTTGCATCCAGAGCAACGCGCGCTTCGCAACCTATTGCCTCTACTGTCAG GTGTCCAGTGCGCCGTCGCCTCTGCCGCAGAGACTGAGAGACCCCCCAGCCTACACCTCCATACCGTCCACGCGA GCCTCGACAGCCGACGCCTCGACCGCGCCCCCTCCCTATACTACCACTACCTGCGCCGCCGAGTCCCCCCAAAAG ACAGGTCTCGGGGCCGATTCGGAAAAGGGCGTCCCGGACGACACGCTCCACTTTCTGAACCACGAGCACGATAGT ATTGCTTCCCTATCGCTCCGATACGGCGTCCCCGCCCCCGTCCTCCGGCGCGCAAACAACATCACCAGCGACCAT CTGCTCCTCGGCCGCAGGACAATCTTGATTCCCGGTCAATATTATAGCTCTGGCATCAGTCTGTCGCCGCGCCCG GTCCACGGCGAGGAGGACGAGTTGAGAAAGGGTAAAATCCGCCGTTTCATGACTTCCTGCAAGGTCTTCGACTAC GACGTTGCCCTCCTCTACCTCGAGCAGTCCAGCTATGATCTCGAGGCTGCCGTGCTGTCGTACTTTGACGACGAT GCCTGGGAGAGGCGCCATCCTAGACAACGTCTCGGCACCGCCACCACGCCTGGCAGAGGGCCCGATCGTCGTAAT CGTCTCTGGCGAGGTCTGTAA |
| Transcript | >Hirsu2|35 ATGGACTTTTGCTGCACCTGCGCCACGGCCCTGACGGCCGAGCCTCGCCGGCTTCGGGGTGAGCGCACGACAGAG TGCTGTGCCAGAACCATCTGCGCCTCTTGCATCCAGAGCAACGCGCGCTTCGCAACCTATTGCCTCTACTGTCAG GTGTCCAGTGCGCCGTCGCCTCTGCCGCAGAGACTGAGAGACCCCCCAGCCTACACCTCCATACCGTCCACGCGA GCCTCGACAGCCGACGCCTCGACCGCGCCCCCTCCCTATACTACCACTACCTGCGCCGCCGAGTCCCCCCAAAAG ACAGGTCTCGGGGCCGATTCGGAAAAGGGCGTCCCGGACGACACGCTCCACTTTCTGAACCACGAGCACGATAGT ATTGCTTCCCTATCGCTCCGATACGGCGTCCCCGCCCCCGTCCTCCGGCGCGCAAACAACATCACCAGCGACCAT CTGCTCCTCGGCCGCAGGACAATCTTGATTCCCGGTCAATATTATAGCTCTGGCATCAGTCTGTCGCCGCGCCCG GTCCACGGCGAGGAGGACGAGTTGAGAAAGGGTAAAATCCGCCGTTTCATGACTTCCTGCAAGGTCTTCGACTAC GACGTTGCCCTCCTCTACCTCGAGCAGTCCAGCTATGATCTCGAGGCTGCCGTGCTGTCGTACTTTGACGACGAT GCCTGGGAGAGGCGCCATCCTAGACAACGTCTCGGCACCGCCACCACGCCTGGCAGAGGGCCCGATCGTCGTAAT CGTCTCTGGCGAGGTCTGTAA |
| Gene | >Hirsu2|35 ATGGACTTTTGCTGCACCTGCGCCACGGCCCTGACGGCCGAGCCTCGCCGGCTTCGGGGTGAGCGCACGACAGAG TGCTGTGCCAGAACCATCTGCGCCTCTTGCATCCAGGTTCGGCGCCCCTTGGCCTCGCCCGGCCTCGCTCCCGCT GACACTGGCCTTGCAGAGCAACGCGCGCTTCGCAACCTATTGCCTCTACTGTCAGGTGTCCAGTGCGCCGTCGCC TCTGCCGCAGAGACTGAGAGACCCCCCAGCCTACACCTCCATACCGTCCACGCGAGCCTCGACAGCCGACGCCTC GACCGCGCCCCCTCCCTATACTACCACTACCTGCGCCGCCGAGTCCCCCCAAAAGACAGGTCTCGGGGCCGATTC GGAAAAGGGCGTCCCGGACGACACGCTCCACTTTCTGAACCACGAGCACGATAGTATTGCTTCCCTATCGCTCCG ATACGGCGTCCCCGCCCCCGTCCTCCGGCGCGCAAACAACATCACCAGCGACCATCTGCTCCTCGGCCGCAGGAC AATCTTGATTCCCGGTCAATATTATAGCTCTGGCATCAGTCTGTCGCCGCGCCCGGTCCACGGCGAGGAGGACGA GTTGAGAAAGGGTAAAATCCGCCGTTTCATGACTTCCTGCAAGGTCTTCGACTACGACGTTGCCCTCCTCTACCT CGAGCAGTCCAGCTATGATCTCGAGGCTGCCGTGCTGTCGTACTTTGACGACGATGCCTGGGAGAGGCGCCATCC TAGACAACGTCTCGGCACCGCCACCACGCCTGGCAGAGGGCCCGATCGTCGTAATCGTCTCTGGCGAGGTCTGTA A |