© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3499 |
| Gene name | |
| Location | Contig_1918:1753..2314 |
| Strand | + |
| Gene length (bp) | 561 |
| Transcript length (bp) | 561 |
| Coding sequence length (bp) | 561 |
| Protein length (aa) | 187 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6669 | 0.4027 | 0.5642 | 0.1168 | 0.2159 | 0.2766 | 0.0979 | 0.1364 | 0.3114 | 0.0149 |
| Orthofinder run ID | 4 |
| Orthogroup | 9364 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3499 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3499 MPRKWAAPWPPTARERPGLGGGAVVASAPKPATPAAPGQQRDSAWVSPVDGSKAERRAVAVVDATDKRPRAGKER HCPGRTAGPSLTARAPVAIHPGQSSRMIRMAVSCGPASSLPNGRTIEGVAVGGAAARNAAVAAAPAELSREWPAS RLHGALPRPGGETPLGSIETTQVASGSWPCPPLPPF* |
| Coding | >Hirsu2|3499 ATGCCCCGGAAATGGGCCGCACCATGGCCTCCTACGGCCCGAGAGCGGCCGGGTCTTGGAGGCGGCGCAGTCGTG GCCAGCGCCCCAAAGCCTGCGACGCCGGCGGCCCCGGGCCAGCAGCGTGACTCTGCGTGGGTCTCCCCAGTGGAC GGCAGCAAAGCCGAGCGGCGGGCAGTGGCCGTTGTCGATGCGACAGACAAGAGGCCGAGGGCGGGCAAGGAGCGG CATTGCCCTGGCAGGACAGCCGGCCCGTCTCTGACAGCCCGCGCCCCTGTCGCCATTCACCCCGGGCAATCGTCT CGCATGATCCGAATGGCCGTGAGCTGCGGTCCCGCGTCCAGCCTGCCGAACGGACGGACTATCGAGGGGGTTGCG GTCGGCGGCGCGGCGGCGCGGAATGCTGCCGTTGCGGCGGCGCCAGCCGAGCTAAGCCGCGAGTGGCCGGCCTCG CGGCTCCACGGGGCCCTCCCACGACCGGGTGGCGAAACGCCGCTCGGTTCGATCGAGACAACGCAGGTCGCCTCA GGTAGTTGGCCTTGTCCCCCCCTCCCTCCCTTTTGA |
| Transcript | >Hirsu2|3499 ATGCCCCGGAAATGGGCCGCACCATGGCCTCCTACGGCCCGAGAGCGGCCGGGTCTTGGAGGCGGCGCAGTCGTG GCCAGCGCCCCAAAGCCTGCGACGCCGGCGGCCCCGGGCCAGCAGCGTGACTCTGCGTGGGTCTCCCCAGTGGAC GGCAGCAAAGCCGAGCGGCGGGCAGTGGCCGTTGTCGATGCGACAGACAAGAGGCCGAGGGCGGGCAAGGAGCGG CATTGCCCTGGCAGGACAGCCGGCCCGTCTCTGACAGCCCGCGCCCCTGTCGCCATTCACCCCGGGCAATCGTCT CGCATGATCCGAATGGCCGTGAGCTGCGGTCCCGCGTCCAGCCTGCCGAACGGACGGACTATCGAGGGGGTTGCG GTCGGCGGCGCGGCGGCGCGGAATGCTGCCGTTGCGGCGGCGCCAGCCGAGCTAAGCCGCGAGTGGCCGGCCTCG CGGCTCCACGGGGCCCTCCCACGACCGGGTGGCGAAACGCCGCTCGGTTCGATCGAGACAACGCAGGTCGCCTCA GGTAGTTGGCCTTGTCCCCCCCTCCCTCCCTTTTGA |
| Gene | >Hirsu2|3499 ATGCCCCGGAAATGGGCCGCACCATGGCCTCCTACGGCCCGAGAGCGGCCGGGTCTTGGAGGCGGCGCAGTCGTG GCCAGCGCCCCAAAGCCTGCGACGCCGGCGGCCCCGGGCCAGCAGCGTGACTCTGCGTGGGTCTCCCCAGTGGAC GGCAGCAAAGCCGAGCGGCGGGCAGTGGCCGTTGTCGATGCGACAGACAAGAGGCCGAGGGCGGGCAAGGAGCGG CATTGCCCTGGCAGGACAGCCGGCCCGTCTCTGACAGCCCGCGCCCCTGTCGCCATTCACCCCGGGCAATCGTCT CGCATGATCCGAATGGCCGTGAGCTGCGGTCCCGCGTCCAGCCTGCCGAACGGACGGACTATCGAGGGGGTTGCG GTCGGCGGCGCGGCGGCGCGGAATGCTGCCGTTGCGGCGGCGCCAGCCGAGCTAAGCCGCGAGTGGCCGGCCTCG CGGCTCCACGGGGCCCTCCCACGACCGGGTGGCGAAACGCCGCTCGGTTCGATCGAGACAACGCAGGTCGCCTCA GGTAGTTGGCCTTGTCCCCCCCTCCCTCCCTTTTGA |