Protein ID | Hirsu2|3487 |
Gene name | |
Location | Contig_1910:328..1131 |
Strand | + |
Gene length (bp) | 803 |
Transcript length (bp) | 582 |
Coding sequence length (bp) | 582 |
Protein length (aa) | 194 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00385 | Chromo | Chromo (CHRromatin Organisation MOdifier) domain | 7.1E-08 | 47 | 94 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5976 | 0.7639 | 0.1088 | 0.0316 | 0.0825 | 0.0121 | 0.0712 | 0.1457 | 0.0851 | 0.086 |
Orthofinder run ID | 4 |
Orthogroup | 799 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3487 MNKSGRQYDEGPPASIASGFEDQDGQENNTVNQVLAEDVNGSDQEFYSVSQILAERQFNGAIKYLVEWEDYSLHE ATWEPPEHLEQDTISEWEEFKTTSGRRTARGFRVEDWKTAVQQHNQGERARQEELNRERLFNALEDFEEPDDQGV LFVDQKQAEPDPMAPTDEQGTLYALSGEHGLHHQEGATAKVDD* |
Coding | >Hirsu2|3487 ATGAACAAATCGGGGCGGCAGTATGACGAAGGACCGCCCGCGTCTATCGCATCTGGCTTCGAAGACCAAGACGGC CAGGAAAATAACACTGTCAACCAAGTACTCGCAGAAGATGTCAACGGGAGCGACCAAGAATTCTACAGCGTCAGC CAGATCCTCGCTGAGAGACAATTCAATGGAGCGATCAAGTATCTGGTCGAATGGGAAGATTATTCTTTGCACGAG GCGACTTGGGAGCCGCCGGAACATCTTGAACAGGATACCATCTCCGAGTGGGAAGAGTTCAAGACGACAAGCGGC CGACGAACGGCTCGAGGATTTAGAGTCGAAGACTGGAAAACAGCCGTTCAGCAGCACAACCAAGGGGAGCGGGCT CGGCAGGAAGAGCTGAACCGCGAGAGACTCTTTAATGCTCTTGAAGACTTTGAGGAGCCTGACGACCAAGGCGTT CTGTTTGTGGACCAAAAACAAGCGGAGCCCGACCCAATGGCACCAACTGATGAGCAGGGCACACTATATGCCTTG AGCGGCGAGCATGGGCTTCACCACCAAGAAGGCGCCACGGCCAAGGTCGACGATTGA |
Transcript | >Hirsu2|3487 ATGAACAAATCGGGGCGGCAGTATGACGAAGGACCGCCCGCGTCTATCGCATCTGGCTTCGAAGACCAAGACGGC CAGGAAAATAACACTGTCAACCAAGTACTCGCAGAAGATGTCAACGGGAGCGACCAAGAATTCTACAGCGTCAGC CAGATCCTCGCTGAGAGACAATTCAATGGAGCGATCAAGTATCTGGTCGAATGGGAAGATTATTCTTTGCACGAG GCGACTTGGGAGCCGCCGGAACATCTTGAACAGGATACCATCTCCGAGTGGGAAGAGTTCAAGACGACAAGCGGC CGACGAACGGCTCGAGGATTTAGAGTCGAAGACTGGAAAACAGCCGTTCAGCAGCACAACCAAGGGGAGCGGGCT CGGCAGGAAGAGCTGAACCGCGAGAGACTCTTTAATGCTCTTGAAGACTTTGAGGAGCCTGACGACCAAGGCGTT CTGTTTGTGGACCAAAAACAAGCGGAGCCCGACCCAATGGCACCAACTGATGAGCAGGGCACACTATATGCCTTG AGCGGCGAGCATGGGCTTCACCACCAAGAAGGCGCCACGGCCAAGGTCGACGATTGA |
Gene | >Hirsu2|3487 ATGAACAAATCGGGGCGGCAGTATGACGAAGGACCGCCCGCGTCTATCGCATCTGGCTTCGAAGACCAAGACGGC CAGGAAAATAACACTGTCAACCAAGTACTCGCAGAAGATGTCAACGGGAGCGACCAAGAATTCTACAGCGTCAGC CAGATCCTCGCTGAGAGACAATTCAATGGAGCGATCAAGTATCTGGTCGAATGGGAAGATTATTCTTTGCACGAG GCGACTTGGGAGCCGCCGGAACATCTTGAACAGGATACCATCTCCGAGTGGGAAGAGTTCAAGACGACAAGCGGC CGACGAACGGCTCGAGGATTTAGAGTCGAAGACTGGAAAACAGCCGTTCAGCAGCACAACCAAGGGGAGCGGGCT CGGCAGGAAGAGCTGAACCGCGAGAGACTCTTTAATGGTCTGCCACCTGAGTACCTCGACAAATTTTTGGAAGAT CTTTTTAACACTGCCGATCTAGCTCTTGAAGACTTTGAGGAGCCTGACGACCAAGGCGTTCTGTTTGTGGACCAA AAACAAGCGGAGCCCGACCCAATGGCACCAACTGATGAGCAGGGCACACTATATGCCTTGAGCGGCGAGCATGGG CTTCACCACCAAGAAGGCGCCACGGTAGTGGGCAGTAAATTACATGAAAGGACGGACAGTATCCCCGTGGCCCGA CGTTCTACAAAGAGGAAGGTCGACGAAGAGAATGTGGAATCTCCGGCACAGAAGACACTCAGTGCGAGCGAGGAA ATAAGAAAACGGCCAAACCCCAGTAAAGCAAGTAGGCCAAGGTCGACGATTGA |