Protein ID | Hirsu2|3480 |
Gene name | |
Location | Contig_191:4962..5811 |
Strand | + |
Gene length (bp) | 849 |
Transcript length (bp) | 849 |
Coding sequence length (bp) | 849 |
Protein length (aa) | 283 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF20246 | DUF6601 | Family of unknown function (DUF6601) | 5.9E-68 | 2 | 227 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Endoplasmic reticulum|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1082 | 0.0314 | 0.1353 | 0.5451 | 0.2525 | 0.0967 | 0.6371 | 0.5849 | 0.6222 | 0.0177 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 181 | 203 | 22 |
2 | 216 | 238 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 798 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3480 MPLHFQVALGRKIVLVDRMDLHLLWGADGKIFIKAMPTFLLSPDFWRNWLGCHDNHGYDSSVSNEATSNSTKVPA AALGVALGFLYTYACLICSETDFRIANDQHLLPRRSDNSTIKWPVWKELTREVLGNHEADLVHPRFQRAELRLSR VNIIHRVTRRSPFDSDVSSWNNYSSLFRDNLAWMTAATVFVALVLTAMSVGLATDRLKGNNDFQRASSGFAVFAI LGLMCAFALVVLTALANLAKDFPGLLKDMLGQSKTLVQSPSQREGARTAEIGSGLEA* |
Coding | >Hirsu2|3480 ATGCCACTACACTTTCAGGTAGCCCTAGGCCGCAAGATTGTCCTCGTCGACCGAATGGATTTGCACCTTCTCTGG GGAGCCGACGGGAAAATCTTTATAAAGGCCATGCCGACCTTTCTTCTCAGTCCGGACTTTTGGCGGAACTGGCTA GGTTGTCACGACAACCACGGCTACGACAGTTCTGTATCAAACGAAGCTACGAGCAACAGCACCAAAGTACCGGCG GCTGCGCTTGGAGTCGCTCTAGGATTCCTCTATACGTATGCTTGTCTCATATGTTCGGAGACGGACTTCCGTATT GCCAACGATCAGCATCTCTTACCTCGAAGGTCAGACAACTCGACAATCAAGTGGCCAGTCTGGAAGGAGTTGACA AGGGAGGTCCTCGGAAACCACGAGGCAGATCTCGTCCACCCACGCTTCCAGCGCGCCGAACTCCGCCTGTCTCGT GTCAATATTATCCACCGTGTGACTCGCCGATCCCCATTTGACTCAGACGTCAGCAGCTGGAATAACTATAGCAGC CTCTTCCGAGATAACCTCGCCTGGATGACCGCTGCTACCGTCTTTGTCGCCCTTGTTCTGACGGCGATGAGTGTT GGCCTTGCCACGGATCGGCTCAAGGGCAATAATGACTTCCAGCGGGCTTCTTCCGGCTTCGCCGTCTTTGCCATC CTGGGGCTTATGTGCGCGTTCGCTTTGGTGGTCCTGACGGCACTAGCGAATCTCGCCAAAGACTTCCCAGGGCTA CTCAAGGACATGCTGGGGCAGTCTAAGACTTTGGTCCAGAGCCCGAGCCAACGAGAAGGTGCACGCACTGCAGAA ATCGGTTCCGGGCTCGAAGCATGA |
Transcript | >Hirsu2|3480 ATGCCACTACACTTTCAGGTAGCCCTAGGCCGCAAGATTGTCCTCGTCGACCGAATGGATTTGCACCTTCTCTGG GGAGCCGACGGGAAAATCTTTATAAAGGCCATGCCGACCTTTCTTCTCAGTCCGGACTTTTGGCGGAACTGGCTA GGTTGTCACGACAACCACGGCTACGACAGTTCTGTATCAAACGAAGCTACGAGCAACAGCACCAAAGTACCGGCG GCTGCGCTTGGAGTCGCTCTAGGATTCCTCTATACGTATGCTTGTCTCATATGTTCGGAGACGGACTTCCGTATT GCCAACGATCAGCATCTCTTACCTCGAAGGTCAGACAACTCGACAATCAAGTGGCCAGTCTGGAAGGAGTTGACA AGGGAGGTCCTCGGAAACCACGAGGCAGATCTCGTCCACCCACGCTTCCAGCGCGCCGAACTCCGCCTGTCTCGT GTCAATATTATCCACCGTGTGACTCGCCGATCCCCATTTGACTCAGACGTCAGCAGCTGGAATAACTATAGCAGC CTCTTCCGAGATAACCTCGCCTGGATGACCGCTGCTACCGTCTTTGTCGCCCTTGTTCTGACGGCGATGAGTGTT GGCCTTGCCACGGATCGGCTCAAGGGCAATAATGACTTCCAGCGGGCTTCTTCCGGCTTCGCCGTCTTTGCCATC CTGGGGCTTATGTGCGCGTTCGCTTTGGTGGTCCTGACGGCACTAGCGAATCTCGCCAAAGACTTCCCAGGGCTA CTCAAGGACATGCTGGGGCAGTCTAAGACTTTGGTCCAGAGCCCGAGCCAACGAGAAGGTGCACGCACTGCAGAA ATCGGTTCCGGGCTCGAAGCATGA |
Gene | >Hirsu2|3480 ATGCCACTACACTTTCAGGTAGCCCTAGGCCGCAAGATTGTCCTCGTCGACCGAATGGATTTGCACCTTCTCTGG GGAGCCGACGGGAAAATCTTTATAAAGGCCATGCCGACCTTTCTTCTCAGTCCGGACTTTTGGCGGAACTGGCTA GGTTGTCACGACAACCACGGCTACGACAGTTCTGTATCAAACGAAGCTACGAGCAACAGCACCAAAGTACCGGCG GCTGCGCTTGGAGTCGCTCTAGGATTCCTCTATACGTATGCTTGTCTCATATGTTCGGAGACGGACTTCCGTATT GCCAACGATCAGCATCTCTTACCTCGAAGGTCAGACAACTCGACAATCAAGTGGCCAGTCTGGAAGGAGTTGACA AGGGAGGTCCTCGGAAACCACGAGGCAGATCTCGTCCACCCACGCTTCCAGCGCGCCGAACTCCGCCTGTCTCGT GTCAATATTATCCACCGTGTGACTCGCCGATCCCCATTTGACTCAGACGTCAGCAGCTGGAATAACTATAGCAGC CTCTTCCGAGATAACCTCGCCTGGATGACCGCTGCTACCGTCTTTGTCGCCCTTGTTCTGACGGCGATGAGTGTT GGCCTTGCCACGGATCGGCTCAAGGGCAATAATGACTTCCAGCGGGCTTCTTCCGGCTTCGCCGTCTTTGCCATC CTGGGGCTTATGTGCGCGTTCGCTTTGGTGGTCCTGACGGCACTAGCGAATCTCGCCAAAGACTTCCCAGGGCTA CTCAAGGACATGCTGGGGCAGTCTAAGACTTTGGTCCAGAGCCCGAGCCAACGAGAAGGTGCACGCACTGCAGAA ATCGGTTCCGGGCTCGAAGCATGA |